Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1285200 Malus domestica HOM05D001496 ORTHO05D007453 1.3e-123 446.4 233 100.0
MD11G1304600 Malus domestica HOM05D001496 ORTHO05D007453 2.8e-110 402.1 229 90.4
Prupe.8G258400 Prunus persica HOM05D001496 ORTHO05D007453 2.0e-92 342.8 225 81.3
FAN15G0073 Fragaria x ananassa HOM05D001496 ORTHO05D007453 4.6e-92 341.7 226 78.3
Cfa005950 Carpinus fangiana HOM05D001496 ORTHO05D007453 6.6e-91 337.8 229 79.0
Atru.chr5.1181 Acer truncatum HOM05D001496 ORTHO05D007453 1.1e-90 337.0 210 80.5
Haze_04897 Corylus avellana HOM05D001496 ORTHO05D007453 1.1e-90 337.0 229 78.2
FAN15G3342 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.1e-90 337.0 223 78.9
FAN24G2787 Fragaria x ananassa HOM05D001496 ORTHO05D007453 1.1e-90 337.0 223 78.5
RcHm_v2.0_Chr6g0293561 Rosa chinensis HOM05D001496 ORTHO05D007453 4.3e-90 335.1 222 78.8
AL4G47330 Arabidopsis lyrata HOM05D001496 ORTHO05D007453 1.6e-89 333.2 229 75.1
Hma1.2p1_0209F.1_g088590 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 4.7e-89 331.6 210 81.0
Rhsim13G0012500 Rhododendron simsii HOM05D001496 ORTHO05D007453 4.7e-89 331.6 224 77.7
Cpa.g.sc9.209 Carica papaya HOM05D001496 ORTHO05D007453 1.4e-88 330.1 228 77.2
Potri.014G131600 Populus trichocarpa HOM05D001496 ORTHO05D007453 1.4e-88 330.1 218 77.5
COL.COLO4_23374 Corchorus olitorius HOM05D001496 ORTHO05D007453 3.1e-88 328.9 231 75.3
Gorai.008G011100 Gossypium raimondii HOM05D001496 ORTHO05D007453 4.0e-88 328.6 226 76.1
vmacro02468 Vaccinium macrocarpon HOM05D001496 ORTHO05D007453 4.0e-88 328.6 229 75.5
Gohir.A12G010700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 5.2e-88 328.2 225 76.4
HanXRQChr12g0382731 Helianthus annuus HOM05D001496 ORTHO05D007453 1.2e-87 327.0 224 77.2
Actinidia24335 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.6e-87 325.9 204 81.9
Dinv19717 Davidia involucrata HOM05D001496 ORTHO05D007453 3.4e-87 325.5 221 79.2
Thecc.01G297200 Theobroma cacao HOM05D001496 ORTHO05D007453 3.4e-87 325.5 230 74.8
CANSAT25G1124 Cannabis sativa HOM05D001496 ORTHO05D007453 4.4e-87 325.1 218 77.1
Duzib133G1333 Durio zibethinus HOM05D001496 ORTHO05D007453 4.4e-87 325.1 230 74.3
QL12p027136 Quercus lobata HOM05D001496 ORTHO05D007453 5.8e-87 324.7 222 76.1
THA.LOC104802172 Tarenaya hassleriana HOM05D001496 ORTHO05D007453 5.8e-87 324.7 224 75.9
CSS0045492 Camellia sinensis var. sinensis HOM05D001496 ORTHO05D007453 1.3e-86 323.6 229 76.9
AT2G47760 Arabidopsis thaliana HOM05D001496 ORTHO05D007453 1.7e-86 323.2 229 72.9
Aa31LG1G29100 Aethionema arabicum HOM05D001496 ORTHO05D007453 2.2e-86 322.8 232 73.7
Thhalv10001458m.g Eutrema salsugineum HOM05D001496 ORTHO05D007453 2.2e-86 322.8 214 76.2
Manes.05G064100 Manihot esculenta HOM05D001496 ORTHO05D007453 2.2e-86 322.8 224 77.7
TWI14G0104 Tripterygium wilfordii HOM05D001496 ORTHO05D007453 2.9e-86 322.4 223 75.3
PGR119G0252 Punica granatum HOM05D001496 ORTHO05D007453 3.7e-86 322.0 234 72.6
PGR119G1256 Punica granatum HOM05D001496 ORTHO05D007453 3.7e-86 322.0 234 72.6
Sabra14G0097800 Salix brachista HOM05D001496 ORTHO05D007453 3.7e-86 322.0 218 76.1
GSVIVG01027976001 Vitis vinifera HOM05D001496 ORTHO05D007453 3.7e-86 322.0 225 75.1
CAN.G339.32 Capsicum annuum HOM05D001496 ORTHO05D007453 8.3e-86 320.9 210 78.6
Gohir.D12G011100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.1e-85 320.5 230 73.9
Solyc09g074900.4 Solanum lycopersicum HOM05D001496 ORTHO05D007453 1.1e-85 320.5 225 75.6
TAR633G2480 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.2e-85 318.9 229 75.1
Nitab4.5_0005474g0020 Nicotiana tabacum HOM05D001496 ORTHO05D007453 5.4e-85 318.2 229 74.2
PGSC0003DMG400011393 Solanum tuberosum HOM05D001496 ORTHO05D007453 9.2e-85 317.4 204 79.4
Sopen09g029720 Solanum pennellii HOM05D001496 ORTHO05D007453 1.2e-84 317.0 215 76.7
Eucgr.H01160 Eucalyptus grandis HOM05D001496 ORTHO05D007453 2.1e-84 316.2 210 79.5
BcaB02g08748 Brassica carinata HOM05D001496 ORTHO05D007453 3.5e-84 315.5 214 76.6
Carub.0004s3047 Capsella rubella HOM05D001496 ORTHO05D007453 3.5e-84 315.5 229 72.9
TAR365G0358 Trochodendron aralioides HOM05D001496 ORTHO05D007453 4.6e-84 315.1 229 73.8
MELO3C016018.2 Cucumis melo HOM05D001496 ORTHO05D007453 7.8e-84 314.3 223 75.3
Aqoxy2G02984 Aquilegia oxysepala HOM05D001496 ORTHO05D007453 1.7e-83 313.2 213 77.0
SalBow3G1333 Salvia bowleyana HOM05D001496 ORTHO05D007453 1.7e-83 313.2 204 77.9
ClCG09G006040 Citrullus lanatus HOM05D001496 ORTHO05D007453 8.6e-83 310.8 223 74.4
Migut.D00196 Erythranthe guttata HOM05D001496 ORTHO05D007453 8.6e-83 310.8 226 73.0
CsaV3_7G029100 Cucumis sativus L. HOM05D001496 ORTHO05D007453 1.1e-82 310.5 223 74.0
PSO170G1216 Papaver somniferum HOM05D001496 ORTHO05D007453 1.9e-82 309.7 222 71.6
Sp4g29690 Schrenkiella parvula HOM05D001496 ORTHO05D007453 4.3e-82 308.5 233 70.8
Glyma.19G210000 Glycine max HOM05D001496 ORTHO05D007453 9.5e-82 307.4 229 70.3
Glyma.03G213200 Glycine max HOM05D001496 ORTHO05D007453 1.6e-81 306.6 229 70.7
Lj1g0019023 Lotus japonicus HOM05D001496 ORTHO05D007453 2.8e-81 305.8 223 72.2
arahy.Tifrunner.gnm1.ann1.D4F8D3 Arachis hypogaea HOM05D001496 ORTHO05D007453 3.6e-81 305.4 223 72.6
arahy.Tifrunner.gnm1.ann1.RVL32D Arachis hypogaea HOM05D001496 ORTHO05D007453 3.6e-81 305.4 223 72.6
Lsat_1_v5_gn_5_190521 Lactuca sativa HOM05D001496 ORTHO05D007453 3.6e-81 305.4 223 74.0
Psat3g022520 Pisum sativum HOM05D001496 ORTHO05D007453 3.6e-81 305.4 223 70.9
Lalb_Chr04g0259811 Lupinus albus HOM05D001496 ORTHO05D007453 4.7e-81 305.1 223 73.1
TPR.G9626 Trifolium pratense HOM05D001496 ORTHO05D007453 8.1e-81 304.3 223 70.4
Ca_09147_v3 Cicer arietinum L. HOM05D001496 ORTHO05D007453 1.1e-80 303.9 223 71.3
ECA248G3024 Erigeron canadensis HOM05D001496 ORTHO05D007453 1.4e-80 303.5 187 82.4
Lj2C1190T13 Lonicera japonica HOM05D001496 ORTHO05D007453 2.3e-80 302.8 221 73.3
SGA_v2.0_scaffold1G00377 Striga asiatica HOM05D000802 ORTHO05D001074 4.0e-80 302.0 232 68.1
Cc01_g20650 Coffea canephora HOM05D001496 ORTHO05D007453 5.2e-80 301.6 219 73.5
BraA05t19016Z Brassica rapa HOM05D001496 ORTHO05D007453 1.5e-79 300.1 226 71.7
Ciclev10020260m.g Citrus clementina HOM05D001496 ORTHO05D007453 2.0e-79 299.7 201 76.1
DCAR_002814 Daucus carota HOM05D001496 ORTHO05D007453 2.6e-79 299.3 201 77.1
Medtr7g108620 Medicago truncatula HOM05D001496 ORTHO05D007453 3.4e-79 298.9 223 70.0
A05p00200 Brassica napus HOM05D001496 ORTHO05D007453 9.9e-79 297.4 238 68.5
Phvul.001G205800 Phaseolus vulgaris HOM05D001496 ORTHO05D007453 9.9e-79 297.4 219 70.3
Nitab4.5_0000619g0030 Nicotiana tabacum HOM05D001496 ORTHO05D007453 1.7e-78 296.6 274 62.0
unitig_0.g1180 Utricularia gibba HOM05D001496 ORTHO05D007453 2.9e-78 295.8 215 67.9
Hund16196 Selenicereus undatus HOM05D001496 ORTHO05D007453 1.4e-77 293.5 195 77.4
EL10Ac2g04497 Beta vulgaris HOM05D001496 ORTHO05D007453 3.2e-77 292.4 196 77.6
Peaxi162Scf00067g02528 Petunia axillaris HOM05D001496 ORTHO05D007453 5.4e-77 291.6 223 71.3
Sc10g0000910 Simmondsia chinensis HOM05D001496 ORTHO05D007453 6.0e-76 288.1 195 75.4
BcaC02g12544 Brassica carinata HOM05D001496 ORTHO05D007453 7.8e-76 287.7 200 75.0
Ah.16g101380 Amaranthus hybridus HOM05D001496 ORTHO05D007453 1.3e-75 287.0 196 77.0
CDE02G4632 Ceratophyllum demersum HOM05D001496 ORTHO05D007453 1.3e-75 287.0 229 68.6
HPP92_016896 Vanilla planifolia HOM05D001496 ORTHO05D007453 2.3e-75 286.2 195 74.4
CiPaw.07G106500 Carya illinoinensis HOM05D001496 ORTHO05D007453 8.6e-75 284.3 229 67.7
C04p00120 Brassica napus HOM05D001496 ORTHO05D007453 1.5e-74 283.5 219 70.3
Oeu048346.1 Olea europaea HOM05D001496 ORTHO05D007453 3.3e-74 282.3 325 53.2
Zm00001eb122900 Zea mays HOM05D001496 ORTHO05D007453 4.3e-74 282.0 197 71.1
AUR62023205 Chenopodium quinoa HOM05D001496 ORTHO05D007453 5.6e-74 281.6 201 74.1
AUR62023251 Chenopodium quinoa HOM05D001496 ORTHO05D007453 1.4e-72 276.9 201 73.1
Sed0004349 Sechium edule HOM05D001496 ORTHO05D007453 1.4e-72 276.9 174 79.3
Mapoly0077s0004 Marchantia polymorpha HOM05D001496 ORTHO05D007453 1.9e-69 266.5 201 67.2
Lalb_Chr04g0259801 Lupinus albus HOM05D001496 ORTHO05D007453 5.4e-69 265.0 207 69.6
ATR0796G343 Amborella trichopoda HOM05D001496 ORTHO05D007453 9.3e-69 264.2 176 72.2
Pp3c10_8510 Physcomitrium patens HOM05D001496 ORTHO05D007453 2.7e-68 262.7 191 68.6
Nn7g38144 Nelumbo nucifera HOM05D001496 ORTHO05D007453 4.6e-68 261.9 209 68.9
AagrBONN_evm.TU.Sc2ySwM_368.922 Anthoceros agrestis HOM05D001496 ORTHO05D007453 3.1e-64 249.2 207 62.3
SMO111G0159 Selaginella moellendorffii HOM05D001496 ORTHO05D007453 7.4e-58 228.0 181 62.4
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 7.6e-55 218.0 194 59.3
Gohir.A05G239300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 9.9e-55 217.6 149 73.8
COL.COLO4_15168 Corchorus olitorius HOM05D001496 ORTHO05D007453 7.4e-50 201.4 120 81.7
Gohir.A01G111300 Gossypium hirsutum HOM05D001496 ORTHO05D007453 1.3e-46 190.7 133 73.7
FvH4_2g25370 Fragaria vesca HOM05D001496 ORTHO05D007453 4.9e-46 188.7 117 84.6
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 1.4e-45 187.2 112 81.2
Gohir.A02G071100 Gossypium hirsutum HOM05D001496 ORTHO05D007453 3.2e-45 186.0 133 72.2
MCO05G420 Micromonas commoda HOM05D001496 ORTHO05D007453 3.2e-45 186.0 191 50.3
Gohir.A12G153600 Gossypium hirsutum HOM05D001496 ORTHO05D007453 6.0e-44 181.8 133 70.7
CARHR143130 Cardamine hirsuta HOM05D001496 ORTHO05D007453 7.9e-44 181.4 117 77.8
Hma1.2p1_0209F.1_g088600 Hydrangea macrophylla HOM05D001496 ORTHO05D007453 2.2e-41 173.3 205 50.7
FAN20G0671 Fragaria x ananassa HOM05D001496 ORTHO05D007453 5.9e-39 165.2 103 84.5
PRCOL_00006487 Prasinoderma coloniale HOM05D001496 ORTHO05D007453 1.3e-35 154.1 194 46.9
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 3.9e-35 152.5 93 86.0
Os01g0172000 Oryza sativa ssp. japonica HOM05D001496 ORTHO05D007453 5.7e-34 148.7 105 67.6
BraA03t11820Z Brassica rapa HOM05D001496 ORTHO05D007453 1.5e-31 140.6 100 70.0
A03p26050 Brassica napus HOM05D000073 ORTHO05D000033 3.4e-31 139.4 100 69.0
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 2.2e-30 136.7 93 74.2
Haze_26252 Corylus avellana HOM05D001496 ORTHO05D007453 1.0e-27 127.9 208 42.3
MBI19_g29447_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 1.4e-24 117.5 69 79.7
MBI14_g09685_MAGBIO Magnolia biondii HOM05D001496 ORTHO05D007453 1.5e-23 114.0 69 78.3
SEGI_31251 Sequoiadendron giganteum HOM05D001496 ORTHO05D007453 1.4e-21 107.5 84 61.9
BolC3t15455H Brassica oleracea HOM05D001496 ORTHO05D007453 2.3e-19 100.1 121 49.6
C03p31050 Brassica napus HOM05D001496 ORTHO05D007453 1.7e-17 94.0 123 48.0
QL02p058842 Quercus lobata HOM05D001496 ORTHO05D000125 4.8e-17 92.4 49 81.6
Gohir.A07G160700 Gossypium hirsutum HOM05D001496 ORTHO05D007453 2.2e-14 83.6 64 73.4
Actinidia02729 Actinidia chinensis HOM05D001496 ORTHO05D007453 2.9e-14 83.2 243 36.6
QL02p059219 Quercus lobata HOM05D001496 ORTHO05D007453 1.2e-12 77.8 51 72.5


User provided reference genes

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