Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 7.1e-184 647.1 324 100.0
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.5e-117 426.8 229 93.0
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.3e-113 413.7 228 89.5
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 6.8e-110 401.4 228 86.4
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 8.8e-110 401.0 228 85.5
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 4.4e-109 398.7 228 86.0
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-108 396.0 229 85.2
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 2.4e-107 392.9 228 84.2
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 5.3e-107 391.7 228 83.8
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 3.5e-106 389.0 228 83.8
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 3.5e-106 389.0 228 84.6
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.9e-106 388.3 229 84.3
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-104 383.3 228 82.0
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.2e-104 382.5 236 80.9
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 5.5e-104 381.7 229 81.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 7.2e-104 381.3 230 81.3
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.6e-103 379.0 229 80.8
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 3.6e-103 379.0 229 81.7
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 3.6e-103 379.0 227 82.4
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.0e-102 377.5 230 81.7
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.4e-102 377.1 227 81.1
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 1.8e-102 376.7 222 82.4
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 6.8e-102 374.8 228 80.7
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 3.4e-101 372.5 230 80.4
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 5.7e-101 371.7 230 80.4
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.7e-101 371.7 227 78.9
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.7e-100 370.2 230 77.8
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 3.7e-100 369.0 228 79.8
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 4.8e-100 368.6 225 78.7
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 6.3e-100 368.2 230 77.4
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 2.4e-99 366.3 228 78.1
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 9.1e-99 364.4 231 77.1
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 9.1e-99 364.4 227 78.0
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.6e-98 363.6 230 80.0
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 2.7e-98 362.8 230 78.7
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 7.7e-98 361.3 230 76.1
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.3e-97 360.5 228 77.6
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 2.3e-97 359.8 229 75.1
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.3e-97 359.8 228 77.2
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 3.8e-97 359.0 228 76.3
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 3.8e-97 359.0 230 77.4
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 6.6e-97 358.2 239 74.9
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 8.6e-97 357.8 228 76.3
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.1e-96 357.5 202 86.6
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.1e-96 357.5 229 77.3
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.5e-96 357.1 257 68.1
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.5e-96 357.1 230 77.8
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.5e-96 356.3 228 77.2
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 5.5e-96 355.1 230 74.8
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 7.2e-96 354.8 252 70.6
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 7.2e-96 354.8 229 74.7
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.2e-95 354.0 230 75.7
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 1.6e-95 353.6 227 76.7
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.6e-95 353.6 228 76.8
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.6e-95 353.6 227 73.1
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.6e-95 353.6 227 74.0
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 2.1e-95 353.2 230 77.0
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.1e-95 353.2 229 73.8
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 2.1e-95 353.2 229 76.9
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 2.8e-95 352.8 229 74.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 3.6e-95 352.4 228 75.4
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 3.6e-95 352.4 227 76.7
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.6e-95 352.4 228 76.8
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 4.7e-95 352.1 227 76.2
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.0e-94 350.9 229 72.9
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.0e-94 350.9 227 76.2
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.4e-94 350.5 209 81.3
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 1.8e-94 350.1 227 73.1
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 1.8e-94 350.1 227 74.0
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 2.3e-94 349.7 227 76.7
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 3.0e-94 349.4 228 76.8
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 3.0e-94 349.4 227 76.2
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 4.0e-94 349.0 218 79.4
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.5e-93 347.1 227 73.6
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 4.4e-93 345.5 228 72.8
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 4.4e-93 345.5 228 72.8
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 4.4e-93 345.5 227 74.9
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 5.7e-93 345.1 227 71.4
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 7.5e-93 344.7 229 72.1
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 1.3e-92 344.0 228 72.4
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.3e-92 344.0 263 67.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 2.2e-92 343.2 230 69.6
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 2.2e-92 343.2 230 70.4
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.7e-92 342.4 228 71.5
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 4.9e-92 342.0 228 73.2
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 6.3e-92 341.7 230 70.9
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 8.3e-92 341.3 228 74.1
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.4e-91 340.5 232 71.6
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.8e-91 340.1 227 71.8
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.1e-91 339.0 223 74.9
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 5.4e-91 338.6 228 73.2
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 5.4e-91 338.6 228 73.7
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.0e-91 338.2 231 71.9
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 9.2e-91 337.8 228 73.2
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-90 337.4 228 75.4
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-90 337.4 231 74.5
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.6e-90 337.0 224 71.9
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.0e-90 336.7 232 71.1
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.0e-90 336.7 228 72.8
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.5e-90 335.9 227 71.4
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 4.5e-90 335.5 223 74.9
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.3e-89 333.2 226 72.1
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 2.3e-89 333.2 228 71.5
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 5.0e-89 332.0 229 72.1
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 5.0e-89 332.0 226 72.1
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 5.0e-89 332.0 228 71.5
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 6.6e-89 331.6 228 71.1
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 8.6e-89 331.3 228 71.1
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.1e-88 330.9 228 71.5
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 3.3e-88 329.3 228 71.9
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 9.5e-88 327.8 228 70.6
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.2e-87 327.4 228 71.5
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 2.1e-87 326.6 228 68.4
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 3.1e-86 322.8 229 68.1
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 4.4e-85 318.9 210 73.8
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 9.8e-85 317.8 310 54.5
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 9.8e-85 317.8 226 69.5
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 1.9e-83 313.5 229 66.4
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 4.1e-83 312.4 204 76.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 9.2e-83 311.2 223 68.6
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 3.5e-82 309.3 195 77.4
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 3.3e-80 302.8 229 66.4
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 3.3e-80 302.8 193 75.6
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 3.6e-79 299.3 229 64.2
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.4e-78 297.4 195 74.4
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.4e-77 292.7 203 71.9
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.7e-76 290.4 227 63.0
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.5e-72 277.3 180 76.1
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 4.0e-70 269.2 148 87.8
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 2.0e-69 266.9 238 60.1
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.9e-65 252.7 144 85.4
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 8.9e-62 241.5 133 88.0
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.2e-61 241.1 215 59.5
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.0e-61 240.4 220 55.0
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 5.8e-61 238.8 223 53.4
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 2.2e-60 236.9 182 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 8.4e-60 235.0 221 52.5
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.4e-60 235.0 124 92.7
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 4.6e-58 229.2 231 50.6
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.7e-57 227.3 144 79.9
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 1.7e-52 210.7 171 62.6
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-50 204.1 119 82.4
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.4e-46 191.0 140 65.0
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 5.3e-46 189.1 134 70.9
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 1.2e-45 188.0 135 67.4
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 3.4e-45 186.4 143 65.0
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.3e-44 184.5 170 55.9
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.9e-44 183.3 144 62.5
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 3.5e-42 176.4 126 71.4
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 8.7e-41 171.8 191 48.7
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.4e-38 163.7 185 46.5
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.9e-35 154.1 191 47.1
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.2e-35 153.3 88 83.0
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 4.2e-35 152.9 138 55.1
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.2e-34 151.4 85 83.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 3.5e-34 149.8 109 69.7
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.0e-33 148.3 97 74.2
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.9e-32 144.1 102 71.6
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.8e-30 137.5 84 84.5
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 5.3e-30 136.0 86 79.1
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.5e-29 134.4 90 72.2
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 2.0e-29 134.0 82 80.5
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.7e-28 131.0 96 63.5
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 2.9e-28 130.2 108 58.3
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 2.9e-28 130.2 85 72.9
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.1e-27 128.3 95 69.5
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.2e-27 126.7 86 74.4
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 1.3e-25 121.3 68 83.8
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.8e-25 120.9 77 77.9
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.5e-24 117.1 87 65.5
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 5.7e-24 115.9 146 46.6
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 2.2e-23 114.0 96 63.5
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.0e-21 107.5 85 65.9
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.1e-19 101.7 107 50.5
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 2.1e-18 97.4 210 30.0
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 7.9e-18 95.5 61 72.1
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 1.8e-17 94.4 51 88.2
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 4.8e-15 86.3 220 30.0
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 4.8e-15 86.3 60 70.0
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.4e-13 80.1 68 57.4
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 5.0e-12 76.3 187 29.9
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 1.2e-10 71.6 49 67.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 2.7e-10 70.5 67 53.7


User provided reference genes

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