Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1281100 Malus domestica HOM05D006643 ORTHO05D008368 3.3e-46 188.0 90 100.0
MD10G1004100 Malus domestica HOM05D006643 ORTHO05D008368 3.1e-28 128.3 64 93.8
Prupe.8G006500 Prunus persica HOM05D006643 ORTHO05D008368 1.2e-27 126.3 64 90.6
RcHm_v2.0_Chr2g0172871 Rosa chinensis HOM05D006643 ORTHO05D008368 3.4e-27 124.8 64 89.1
FvH4_6g51270 Fragaria vesca HOM05D006643 ORTHO05D008368 1.7e-26 122.5 64 87.5
FAN02G2944 Fragaria x ananassa HOM05D006643 ORTHO05D008368 1.7e-26 122.5 64 87.5
FAN05G3471 Fragaria x ananassa HOM05D006643 ORTHO05D008368 1.7e-26 122.5 64 87.5
FAN09G1035 Fragaria x ananassa HOM05D006643 ORTHO05D008368 1.7e-26 122.5 64 87.5
FAN14G5370 Fragaria x ananassa HOM05D006643 ORTHO05D008368 1.7e-26 122.5 64 87.5
Atru.chr4.1246 Acer truncatum HOM05D006643 ORTHO05D008368 3.2e-25 118.2 64 84.4
CANSAT78G1363 Cannabis sativa HOM05D006643 ORTHO05D008368 4.1e-25 117.9 64 81.2
Manes.11G122600 Manihot esculenta HOM05D006643 ORTHO05D008368 4.1e-25 117.9 64 82.8
Cpa.g.sc9.302 Carica papaya HOM05D006643 ORTHO05D008368 5.4e-25 117.5 64 84.4
Ciclev10021679m.g Citrus clementina HOM05D006643 ORTHO05D008368 9.2e-25 116.7 64 82.8
Dinv44177 Davidia involucrata HOM05D006643 ORTHO05D008368 9.2e-25 116.7 64 81.2
Manes.04G044300 Manihot esculenta HOM05D006643 ORTHO05D008368 9.2e-25 116.7 64 81.2
QL10p050520 Quercus lobata HOM05D006643 ORTHO05D008368 9.2e-25 116.7 64 79.7
Sabra17G0016800 Salix brachista HOM05D006643 ORTHO05D008368 9.2e-25 116.7 64 82.8
TAR633G0985 Trochodendron aralioides HOM05D006643 ORTHO05D008368 9.2e-25 116.7 64 82.8
Aqoxy2G04152 Aquilegia oxysepala HOM05D006643 ORTHO05D008368 1.2e-24 116.3 64 81.2
Glyma.12G051500 Glycine max HOM05D006643 ORTHO05D008368 1.2e-24 116.3 64 82.8
Lj6C78T6 Lonicera japonica HOM05D006643 ORTHO05D008368 1.2e-24 116.3 64 81.2
Potri.017G027800 Populus trichocarpa HOM05D006643 ORTHO05D008368 1.2e-24 116.3 64 82.8
Cfa000631 Carpinus fangiana HOM05D006643 ORTHO05D008368 1.6e-24 115.9 64 81.2
Dinv22753 Davidia involucrata HOM05D006643 ORTHO05D008368 1.6e-24 115.9 64 81.2
Thecc.04G176000 Theobroma cacao HOM05D006643 ORTHO05D008368 1.6e-24 115.9 64 82.8
arahy.Tifrunner.gnm1.ann1.C0G1TY Arachis hypogaea HOM05D006643 ORTHO05D008368 2.1e-24 115.5 64 81.2
arahy.Tifrunner.gnm1.ann1.NE1CMA Arachis hypogaea HOM05D006643 ORTHO05D008368 2.1e-24 115.5 64 81.2
Ca_20795_v3 Cicer arietinum L. HOM05D006643 ORTHO05D008368 2.1e-24 115.5 64 81.2
DCAR_028434 Daucus carota HOM05D006643 ORTHO05D008368 2.1e-24 115.5 64 79.7
Duzib151G1217 Durio zibethinus HOM05D006643 ORTHO05D008368 2.7e-24 115.2 64 81.2
Glyma.11G126900 Glycine max HOM05D006643 ORTHO05D008368 2.7e-24 115.2 64 81.2
Lju682C5T3 Lonicera japonica HOM05D006643 ORTHO05D008368 2.7e-24 115.2 64 79.7
Lalb_Chr01g0003121 Lupinus albus HOM05D006643 ORTHO05D008368 2.7e-24 115.2 63 82.5
Nitab4.5_0001586g0090 Nicotiana tabacum HOM05D006643 ORTHO05D008368 2.7e-24 115.2 64 81.2
CSS0015670 Camellia sinensis var. sinensis HOM05D006643 ORTHO05D008368 3.5e-24 114.8 64 81.2
Rhsim09G0023800 Rhododendron simsii HOM05D006643 ORTHO05D008368 3.5e-24 114.8 64 81.2
Gohir.D02G111600 Gossypium hirsutum HOM05D006643 ORTHO05D008368 4.6e-24 114.4 64 78.1
Sabra07G0106000 Salix brachista HOM05D006643 ORTHO05D008368 4.6e-24 114.4 63 81.0
EL10Ac3g05986 Beta vulgaris HOM05D006643 ORTHO05D008368 6.0e-24 114.0 64 79.7
Haze_01468 Corylus avellana HOM05D006643 ORTHO05D008368 6.0e-24 114.0 64 79.7
Lalb_Chr19g0138371 Lupinus albus HOM05D006643 ORTHO05D008368 6.0e-24 114.0 64 79.7
Nitab4.5_0006064g0060 Nicotiana tabacum HOM05D006643 ORTHO05D008368 6.0e-24 114.0 64 79.7
Phvul.011G053600 Phaseolus vulgaris HOM05D006643 ORTHO05D008368 6.0e-24 114.0 64 81.2
TWI15G0378 Tripterygium wilfordii HOM05D006643 ORTHO05D008368 6.0e-24 114.0 64 79.7
HanXRQChr15g0469161 Helianthus annuus HOM05D006643 ORTHO05D008368 7.8e-24 113.6 64 79.7
Psat7g209520 Pisum sativum HOM05D006643 ORTHO05D008368 7.8e-24 113.6 64 79.7
Gorai.005G126600 Gossypium raimondii HOM05D006643 ORTHO05D008368 1.0e-23 113.2 64 76.6
Potri.007G130300 Populus trichocarpa HOM05D006643 ORTHO05D008368 1.0e-23 113.2 64 78.1
VMungo1127G1158 Vigna mungo HOM05D006643 ORTHO05D008368 1.0e-23 113.2 64 79.7
AUR62023855 Chenopodium quinoa HOM05D006643 ORTHO05D008368 1.3e-23 112.8 64 76.6
CsaV3_6G006800 Cucumis sativus L. HOM05D006643 ORTHO05D008368 1.3e-23 112.8 64 82.8
Gohir.A02G093700 Gossypium hirsutum HOM05D006643 ORTHO05D008368 1.3e-23 112.8 64 76.6
GSVIVG01010795001 Vitis vinifera HOM05D006643 ORTHO05D008368 1.3e-23 112.8 64 78.1
CiPaw.02G053100 Carya illinoinensis HOM05D006643 ORTHO05D008368 1.7e-23 112.5 64 76.6
AUR62002333 Chenopodium quinoa HOM05D006643 ORTHO05D008368 1.7e-23 112.5 64 75.0
Lsat_1_v5_gn_5_71141 Lactuca sativa HOM05D006643 ORTHO05D008368 1.7e-23 112.5 64 78.1
Oeu034449.1 Olea europaea HOM05D006643 ORTHO05D008368 1.7e-23 112.5 64 78.1
PSO017G5579 Papaver somniferum HOM05D006643 ORTHO05D008368 1.7e-23 112.5 64 78.1
PSO675G0996 Papaver somniferum HOM05D006643 ORTHO05D008368 1.7e-23 112.5 64 78.1
unitig_22.g5711 Utricularia gibba HOM05D006643 ORTHO05D008368 1.7e-23 112.5 64 78.1
Lalb_Chr03g0026051 Lupinus albus HOM05D006643 ORTHO05D008368 2.3e-23 112.1 63 81.0
PGR083G2474 Punica granatum HOM05D006643 ORTHO05D008368 2.3e-23 112.1 64 81.2
PGSC0003DMG400016303 Solanum tuberosum HOM05D006643 ORTHO05D008368 2.3e-23 112.1 64 79.7
ClCG06G000950 Citrullus lanatus HOM05D006643 ORTHO05D008368 3.0e-23 111.7 64 81.2
MELO3C022444.2 Cucumis melo HOM05D006643 ORTHO05D008368 3.0e-23 111.7 64 81.2
SGA_v2.0_scaffold17G08152 Striga asiatica HOM05D006643 ORTHO05D008368 3.0e-23 111.7 64 78.1
TPR.G34198 Trifolium pratense HOM05D006643 ORTHO05D008368 5.1e-23 110.9 64 78.1
arahy.Tifrunner.gnm1.ann1.T4WUKA Arachis hypogaea HOM05D006643 ORTHO05D008368 6.6e-23 110.5 62 79.0
Nn7g37598 Nelumbo nucifera HOM05D006643 ORTHO05D008368 6.6e-23 110.5 64 78.1
Duzib268G1702 Durio zibethinus HOM05D006643 ORTHO05D008368 8.6e-23 110.2 64 78.1
Solyc06g053370.3 Solanum lycopersicum HOM05D006643 ORTHO05D008368 1.1e-22 109.8 64 78.1
Sopen06g018420 Solanum pennellii HOM05D006643 ORTHO05D008368 1.1e-22 109.8 64 78.1
Nn7g37557 Nelumbo nucifera HOM05D006643 ORTHO05D008368 1.5e-22 109.4 64 75.0
MSTRG.22006 Avicennia marina HOM05D006643 ORTHO05D008368 2.5e-22 108.6 64 78.1
Cc04_g06020 Coffea canephora HOM05D006643 ORTHO05D008368 2.5e-22 108.6 64 78.1
Gohir.A02G011800 Gossypium hirsutum HOM05D006643 ORTHO05D008368 2.5e-22 108.6 64 70.3
Rhsim02G0081600 Rhododendron simsii HOM05D006643 ORTHO05D008368 2.5e-22 108.6 64 73.4
SalBow6G5841 Salvia bowleyana HOM05D006643 ORTHO05D008368 2.5e-22 108.6 64 75.0
Sed0005729 Sechium edule HOM05D006643 ORTHO05D008368 2.5e-22 108.6 64 76.6
SEGI_39406 Sequoiadendron giganteum HOM05D006643 ORTHO05D008368 2.5e-22 108.6 64 73.4
Gohir.D02G012600 Gossypium hirsutum HOM05D006643 ORTHO05D008368 3.3e-22 108.2 64 70.3
Gorai.005G016100 Gossypium raimondii HOM05D006643 ORTHO05D008368 3.3e-22 108.2 64 70.3
Medtr4g067340 Medicago truncatula HOM05D006643 ORTHO05D008368 7.3e-22 107.1 64 76.6
CAN.G136.18 Capsicum annuum HOM05D006643 ORTHO05D008368 9.5e-22 106.7 65 78.5
Aa31LG10G13850 Aethionema arabicum HOM05D006643 ORTHO05D008368 1.2e-21 106.3 64 71.9
ATR0743G075 Amborella trichopoda HOM05D006643 ORTHO05D008368 1.2e-21 106.3 64 76.6
Migut.N03101 Erythranthe guttata HOM05D006643 ORTHO05D008368 1.2e-21 106.3 64 75.0
Eucgr.A00099 Eucalyptus grandis HOM05D006643 ORTHO05D008368 1.2e-21 106.3 64 73.4
Sc13g0006740 Simmondsia chinensis HOM05D006643 ORTHO05D008368 1.2e-21 106.3 64 73.4
THA.LOC104802315 Tarenaya hassleriana HOM05D006643 ORTHO05D008368 1.2e-21 106.3 64 76.6
Oeu020509.1 Olea europaea HOM05D006643 ORTHO05D008368 1.6e-21 105.9 64 75.0
Peaxi162Scf00184g00072 Petunia axillaris HOM05D006643 ORTHO05D008368 1.6e-21 105.9 64 75.0
Hund12018 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.6e-21 105.9 64 75.0
HPP92_013566 Vanilla planifolia HOM05D006643 ORTHO05D008368 4.7e-21 104.4 64 71.9
A09p51790 Brassica napus HOM05D006643 ORTHO05D008368 6.2e-21 104.0 64 71.9
BraA09t40614Z Brassica rapa HOM05D006643 ORTHO05D008368 6.2e-21 104.0 64 71.9
CARHR169900 Cardamine hirsuta HOM05D006643 ORTHO05D008368 6.2e-21 104.0 64 71.9
C08p34520 Brassica napus HOM05D006643 ORTHO05D008368 1.1e-20 103.2 64 68.8
BolC8t51053H Brassica oleracea HOM05D006643 ORTHO05D008368 1.1e-20 103.2 64 68.8
Thhalv10006170m.g Eutrema salsugineum HOM05D006643 ORTHO05D008368 1.8e-20 102.4 64 68.8
MBI07_g02895_MAGBIO Magnolia biondii HOM05D006643 ORTHO05D008368 2.4e-20 102.1 64 70.3
THA.LOC104803815 Tarenaya hassleriana HOM05D006643 ORTHO05D008368 2.4e-20 102.1 64 68.8
AL5G41440 Arabidopsis lyrata HOM05D006643 ORTHO05D008368 3.1e-20 101.7 64 68.8
AT3G59520 Arabidopsis thaliana HOM05D006643 ORTHO05D008368 5.2e-20 100.9 64 67.2
Carub.0005s2625 Capsella rubella HOM05D006643 ORTHO05D008368 5.2e-20 100.9 64 68.8
Sp5g03640 Schrenkiella parvula HOM05D006643 ORTHO05D008368 1.5e-19 99.4 64 68.8
Os01g0895500 Oryza sativa ssp. japonica HOM05D006643 ORTHO05D008368 3.8e-18 94.7 65 67.7
Pp3c18_5250 Physcomitrium patens HOM05D006643 ORTHO05D008368 1.9e-17 92.4 64 62.5
SMO358G0698 Selaginella moellendorffii HOM05D006643 ORTHO05D008368 4.2e-17 91.3 64 60.9
Zm00001eb365770 Zea mays HOM05D006643 ORTHO05D008368 9.2e-17 90.1 65 63.1
Mapoly0003s0018 Marchantia polymorpha HOM05D006643 ORTHO05D008368 1.6e-16 89.4 64 64.1
Oeu003367.1 Olea europaea HOM05D006643 ORTHO05D008368 5.6e-14 80.9 57 68.4
CBR_g12522 Chara braunii HOM05D006643 ORTHO05D008368 2.1e-13 79.0 64 53.1
CBR_g3657 Chara braunii HOM05D006643 ORTHO05D008368 2.8e-13 78.6 64 54.7
SHI23489 Sapria himalayana HOM05D006643 ORTHO05D008368 1.7e-07 59.3 34 76.5


User provided reference genes

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