Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1258100 Malus domestica HOM05D004978 ORTHO05D005621 4.8e-94 347.8 177 100.0
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 2.8e-81 305.4 177 88.1
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.2e-63 246.9 173 72.3
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.5e-63 246.5 173 72.8
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 1.5e-63 246.5 175 72.0
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 5.8e-63 244.6 173 72.3
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 7.5e-63 244.2 173 72.3
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 8.3e-62 240.7 173 71.1
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 1.6e-57 226.5 174 68.4
GSVIVG01003120001 Vitis vinifera HOM05D004978 ORTHO05D005621 2.8e-57 225.7 174 66.1
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 6.8e-56 221.1 170 67.6
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 8.3e-54 214.2 165 67.3
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 1.1e-53 213.8 174 63.8
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 1.9e-53 213.0 173 64.2
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 3.2e-53 212.2 175 61.7
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 4.1e-53 211.8 171 63.7
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 1.2e-52 210.3 165 64.8
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 3.5e-52 208.8 171 63.7
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 6.0e-52 208.0 174 62.1
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 6.0e-52 208.0 174 62.1
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 6.0e-52 208.0 169 63.3
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 3.0e-51 205.7 173 63.0
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 3.0e-51 205.7 174 61.5
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 6.6e-51 204.5 173 61.3
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 1.1e-50 203.8 160 65.0
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 1.6e-49 199.9 165 62.4
Sc05g0001300 Simmondsia chinensis HOM05D004978 ORTHO05D005621 1.2e-47 193.7 171 59.6
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 1.5e-47 193.4 169 61.5
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 1.5e-47 193.4 151 68.2
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 2.0e-47 193.0 167 59.3
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 7.6e-47 191.0 174 58.6
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 9.9e-47 190.7 176 58.0
VMungo0720G1640 Vigna mungo HOM05D004978 ORTHO05D005621 9.9e-47 190.7 164 62.8
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 1.3e-46 190.3 164 62.8
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 1.3e-46 190.3 151 66.9
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 6.4e-46 188.0 176 58.0
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 6.4e-46 188.0 172 61.0
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 8.4e-46 187.6 164 63.4
Psat6g058480 Pisum sativum HOM05D004978 ORTHO05D005621 1.1e-45 187.2 171 56.7
Oeu014736.1 Olea europaea HOM05D004978 ORTHO05D005621 1.4e-45 186.8 162 57.4
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 1.4e-45 186.8 174 56.9
Lj5g0010127 Lotus japonicus HOM05D004978 ORTHO05D005621 1.9e-45 186.4 172 57.0
TWI12G0244 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 3.2e-45 185.7 164 59.1
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 1.2e-44 183.7 171 57.9
PSO832G2480 Papaver somniferum HOM05D004978 ORTHO05D005621 2.7e-44 182.6 162 60.5
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 6.0e-44 181.4 162 60.5
Cpa.g.sc52.118 Carica papaya HOM05D004978 ORTHO05D005621 7.8e-44 181.0 153 60.8
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 7.8e-44 181.0 164 58.5
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 1.0e-43 180.6 156 63.5
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 3.9e-43 178.7 177 55.9
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 6.6e-43 177.9 177 55.9
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 1.1e-42 177.2 153 61.4
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 1.1e-42 177.2 170 52.9
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 1.5e-42 176.8 166 53.6
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 1.5e-42 176.8 175 53.1
Lj2A1164T58 Lonicera japonica HOM05D004978 ORTHO05D005621 1.9e-42 176.4 153 58.2
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 2.5e-42 176.0 171 58.5
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 5.6e-42 174.9 174 52.9
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 7.3e-42 174.5 170 54.1
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 1.3e-41 173.7 175 52.6
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 2.1e-41 172.9 172 55.8
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 2.1e-41 172.9 170 53.5
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 2.1e-41 172.9 170 53.5
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 2.1e-41 172.9 165 55.2
Nitab4.5_0000459g0120 Nicotiana tabacum HOM05D004978 ORTHO05D005621 2.1e-41 172.9 170 52.4
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 3.6e-41 172.2 170 54.7
AUR62011971 Chenopodium quinoa HOM05D004978 ORTHO05D005621 6.2e-41 171.4 198 50.5
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 1.1e-40 170.6 174 51.1
Peaxi162Scf00259g00051 Petunia axillaris HOM05D004978 ORTHO05D005621 1.4e-40 170.2 174 51.1
CAN.G433.6 Capsicum annuum HOM05D004978 ORTHO05D005621 2.4e-40 169.5 173 52.6
Prupe.8G234700 Prunus persica HOM05D004978 ORTHO05D005621 4.0e-40 168.7 103 81.6
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 9.0e-40 167.5 155 55.5
PGSC0003DMG400019310 Solanum tuberosum HOM05D004978 ORTHO05D005621 1.2e-39 167.2 173 52.6
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 2.6e-39 166.0 167 51.5
Solyc09g065690.4 Solanum lycopersicum HOM05D004978 ORTHO05D005621 2.6e-39 166.0 173 52.0
Carub.0006s1819 Capsella rubella HOM05D004978 ORTHO05D005621 4.4e-39 165.2 173 49.7
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 5.8e-39 164.9 151 62.3
Sopen09g027430 Solanum pennellii HOM05D004978 ORTHO05D005621 5.8e-39 164.9 173 52.6
CDE02G4319 Ceratophyllum demersum HOM05D004978 ORTHO05D005621 1.3e-38 163.7 170 51.8
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 3.8e-38 162.2 189 50.8
ATR0665G047 Amborella trichopoda HOM05D004978 ORTHO05D005621 1.4e-37 160.2 171 52.0
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 1.9e-37 159.8 200 48.5
Ca_09727_v3 Cicer arietinum L. HOM05D004978 ORTHO05D005621 2.1e-36 156.4 154 55.2
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 2.7e-36 156.0 159 54.1
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 4.6e-36 155.2 163 50.9
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 6.0e-36 154.8 232 42.2
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 1.9e-34 149.8 155 54.8
Ah.11g050220 Amaranthus hybridus HOM05D004978 ORTHO05D005621 6.2e-33 144.8 193 46.1
HPP92_022057 Vanilla planifolia HOM05D004978 ORTHO05D005621 1.1e-32 144.1 166 47.6
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 2.4e-32 142.9 155 52.9
unitig_0.g1132 Utricularia gibba HOM05D004978 ORTHO05D005621 4.5e-31 138.7 199 42.2
TAR636G2873 Trochodendron aralioides HOM05D004978 ORTHO05D005621 7.6e-31 137.9 93 73.1
Duzib133G0140 Durio zibethinus HOM05D004978 ORTHO05D005621 6.4e-30 134.8 92 72.8
Glyma.02G144333 Glycine max HOM05D004978 ORTHO05D005621 1.0e-27 127.5 82 73.2
Hund09547 Selenicereus undatus HOM05D004978 ORTHO05D005621 1.3e-27 127.1 214 40.2
TPR.G34891 Trifolium pratense HOM05D004978 ORTHO05D005621 1.1e-21 107.5 115 53.0
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.0e-19 100.9 101 48.5
SMO367G0146 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 1.3e-19 100.5 101 47.5
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 5.1e-19 98.6 101 46.5
Mapoly0003s0071 Marchantia polymorpha HOM05D004978 ORTHO05D005621 9.6e-18 94.4 107 41.1
Lalb_Chr06g0162781 Lupinus albus HOM05D004978 ORTHO05D005621 2.1e-17 93.2 65 66.2
CSS0039116 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 6.9e-16 88.2 83 54.2
SEGI_31795 Sequoiadendron giganteum HOM05D004978 ORTHO05D005621 9.0e-16 87.8 80 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2029 Anthoceros agrestis HOM05D004978 ORTHO05D005621 1.2e-15 87.4 103 42.7
Pp3c26_13750 Physcomitrium patens HOM05D004978 ORTHO05D005621 3.4e-15 85.9 106 41.5
QL05p031917 Quercus lobata HOM05D000015 ORTHO05D005621 6.1e-12 75.1 80 51.2
Potri.002G047875 Populus trichocarpa HOM05D004978 ORTHO05D005621 2.8e-09 66.2 84 46.4
CSS0038001 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 4.8e-09 65.5 52 65.4
MBI11_g08089_MAGBIO Magnolia biondii HOM05D004978 ORTHO05D005621 6.3e-09 65.1 85 44.7
Dinv22502 Davidia involucrata HOM05D004978 ORTHO05D005621 1.5e-07 60.5 127 41.7
TPR.G21665 Trifolium pratense HOM05D004978 ORTHO05D005621 4.5e-07 58.9 84 42.9


User provided reference genes

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