Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 2.9e-114 415.2 209 100.0
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 2.1e-64 249.6 194 72.2
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 3.1e-63 245.7 171 78.4
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 1.2e-59 233.8 194 68.6
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 3.5e-59 232.3 246 57.7
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.0e-58 230.7 194 67.5
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 2.8e-56 222.6 200 64.5
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 8.9e-55 217.6 200 64.0
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.5e-54 216.9 195 62.6
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.6e-54 216.1 200 63.5
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 3.7e-53 212.2 195 63.6
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 4.9e-53 211.8 209 59.3
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 5.4e-52 208.4 195 62.1
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 7.1e-52 208.0 195 62.6
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 7.1e-52 208.0 195 60.5
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 9.2e-52 207.6 195 60.5
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 9.2e-52 207.6 195 60.0
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 1.2e-51 207.2 201 60.2
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 2.1e-51 206.5 194 59.8
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 3.5e-51 205.7 194 59.8
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 3.5e-51 205.7 195 63.1
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 4.6e-51 205.3 195 59.5
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 6.0e-51 204.9 195 60.5
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 1.3e-50 203.8 195 60.0
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.3e-50 203.8 194 59.8
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.7e-50 203.4 195 61.5
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.3e-50 203.0 195 61.0
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 3.9e-50 202.2 194 59.8
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 3.9e-50 202.2 192 59.4
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 5.1e-50 201.8 195 59.5
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 6.6e-50 201.4 195 60.5
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 8.6e-50 201.1 192 57.8
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.1e-49 200.7 195 56.9
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 1.5e-49 200.3 195 58.5
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 1.9e-49 199.9 194 57.7
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 1.9e-49 199.9 192 57.8
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 2.5e-49 199.5 194 58.2
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 2.5e-49 199.5 195 57.9
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 2.5e-49 199.5 195 59.0
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.3e-49 199.1 167 64.7
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.2e-48 197.2 192 55.2
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 1.6e-48 196.8 195 57.4
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 2.1e-48 196.4 192 54.7
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 2.1e-48 196.4 194 56.7
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 2.8e-48 196.1 192 57.8
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.8e-48 196.1 192 54.7
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 2.8e-48 196.1 194 56.2
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 4.7e-48 195.3 194 57.2
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 8.1e-48 194.5 193 57.5
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 8.1e-48 194.5 194 56.2
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 3.1e-47 192.6 195 56.9
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 3.1e-47 192.6 194 55.7
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 3.1e-47 192.6 195 57.4
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 5.2e-47 191.8 195 56.9
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 5.2e-47 191.8 194 56.2
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 5.2e-47 191.8 194 56.2
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 8.9e-47 191.0 194 55.7
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 8.9e-47 191.0 175 58.3
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 1.2e-46 190.7 194 55.7
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.2e-46 190.7 194 54.1
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 1.5e-46 190.3 194 54.1
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 1.5e-46 190.3 194 54.6
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 1.5e-46 190.3 194 55.2
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 2.6e-46 189.5 194 54.1
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 3.4e-46 189.1 196 55.1
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 3.4e-46 189.1 195 53.3
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 4.4e-46 188.7 194 54.6
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 4.4e-46 188.7 194 55.2
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 4.4e-46 188.7 193 56.0
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 7.6e-46 188.0 194 54.1
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 9.9e-46 187.6 194 55.7
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 1.3e-45 187.2 193 55.4
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 1.3e-45 187.2 194 57.2
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.7e-45 186.8 193 58.0
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 3.8e-45 185.7 194 57.2
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 4.9e-45 185.3 202 54.5
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 8.4e-45 184.5 194 54.6
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 1.1e-44 184.1 194 53.1
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 7.1e-44 181.4 193 54.9
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.6e-43 180.3 197 53.8
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 4.6e-43 178.7 216 49.5
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 6.0e-43 178.3 194 56.2
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 7.8e-43 177.9 196 53.6
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 1.7e-42 176.8 193 53.4
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 3.0e-42 176.0 193 52.8
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 2.5e-41 172.9 194 53.1
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 4.8e-40 168.7 152 60.5
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.1e-39 167.5 178 52.8
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.8e-39 166.8 195 48.7
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 2.4e-39 166.4 195 48.2
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 5.3e-39 165.2 152 60.5
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.5e-38 163.7 195 48.2
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 2.0e-38 163.3 184 53.8
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 2.9e-37 159.5 142 62.0
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 3.8e-37 159.1 195 49.2
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.1e-35 153.3 198 48.5
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 1.3e-34 150.6 170 49.4
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 2.3e-34 149.8 195 49.2
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 8.7e-34 147.9 152 57.2
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 4.3e-33 145.6 145 52.4
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 5.6e-33 145.2 196 42.3
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 7.3e-33 144.8 195 45.1
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 1.1e-31 141.0 196 46.4
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 1.8e-31 140.2 192 46.9
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 1.8e-31 140.2 196 46.4
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 3.1e-31 139.4 196 46.4
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 5.3e-31 138.7 195 46.7
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 6.9e-31 138.3 196 46.4
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 9.0e-31 137.9 196 45.9
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 9.0e-31 137.9 196 45.4
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 9.0e-31 137.9 195 46.2
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 4.5e-30 135.6 196 45.4
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 4.5e-30 135.6 196 44.9
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 7.6e-30 134.8 195 47.2
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 7.6e-30 134.8 196 44.4
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 9.9e-30 134.4 204 42.2
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 1.7e-29 133.7 195 46.7
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 1.7e-29 133.7 195 46.7
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 1.7e-29 133.7 195 46.7
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 2.9e-29 132.9 195 46.7
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 3.8e-29 132.5 196 43.9
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 8.4e-29 131.3 197 44.7
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 1.0e-26 124.4 206 37.9
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.4e-23 114.0 98 68.4
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 2.4e-15 86.7 109 45.9
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 1.5e-14 84.0 161 40.4
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.0e-06 57.0 77 46.8


User provided reference genes

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