Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1248100 Malus domestica HOM05D000043 ORTHO05D034142 2.7e-31 137.9 64 100.0
MD03G1249000 Malus domestica HOM05D000043 ORTHO05D034142 1.6e-26 122.1 61 91.8
MD03G1246700 Malus domestica HOM05D000043 ORTHO05D000223 2.0e-18 95.1 114 47.4
Aa31LG8G2060 Aethionema arabicum HOM05D000043 ORTHO05D000223 8.6e-17 89.7 59 67.8
SGA_v2.0_scaffold181G39762 Striga asiatica HOM05D000043 ORTHO05D000223 4.3e-16 87.4 114 43.9
Prupe.4G157600 Prunus persica HOM05D000043 ORTHO05D000223 5.6e-16 87.0 113 44.2
MD11G1268700 Malus domestica HOM05D000043 ORTHO05D000223 2.1e-15 85.1 114 43.9
Haze_09301 Corylus avellana HOM05D000043 ORTHO05D000223 2.8e-15 84.7 89 50.6
Thecc.07G130100 Theobroma cacao HOM05D000043 ORTHO05D000223 2.3e-14 81.6 114 39.5
COL.COLO4_17484 Corchorus olitorius HOM05D000043 ORTHO05D000223 5.2e-14 80.5 114 38.6
Duzib213G0242 Durio zibethinus HOM05D000043 ORTHO05D000223 8.9e-14 79.7 114 38.6
MSTRG.14982 Avicennia marina HOM05D000043 ORTHO05D000223 1.5e-13 79.0 114 40.4
RcHm_v2.0_Chr5g0029611 Rosa chinensis HOM05D000043 ORTHO05D000223 2.6e-13 78.2 112 40.2
MD11G1262000 Malus domestica HOM05D000043 ORTHO05D000223 4.4e-13 77.4 114 42.1
FAN25G3325 Fragaria x ananassa HOM05D000043 ORTHO05D000223 9.8e-13 76.3 112 39.3
SalBow8G3825 Salvia bowleyana HOM05D000043 ORTHO05D000223 9.8e-13 76.3 115 38.3
Hma1.2p1_0050F.1_g028860 Hydrangea macrophylla HOM05D000043 ORTHO05D000223 1.3e-12 75.9 114 37.7
Nitab4.5_0004042g0020 Nicotiana tabacum HOM05D000043 ORTHO05D000223 1.3e-12 75.9 114 36.0
Cfa019540 Carpinus fangiana HOM05D000043 ORTHO05D000223 1.7e-12 75.5 113 39.8
Eucgr.F01363 Eucalyptus grandis HOM05D000043 ORTHO05D000223 1.7e-12 75.5 114 37.7
TPR.G13091 Trifolium pratense HOM05D000043 ORTHO05D000223 1.7e-12 75.5 114 37.7
unitig_85.g27427 Utricularia gibba HOM05D000043 ORTHO05D000223 1.7e-12 75.5 114 36.0
Gohir.A13G150600 Gossypium hirsutum HOM05D000043 ORTHO05D000223 2.2e-12 75.1 114 36.8
Gorai.013G175200 Gossypium raimondii HOM05D000043 ORTHO05D000223 2.2e-12 75.1 114 36.8
QL02p092104 Quercus lobata HOM05D000043 ORTHO05D000223 2.2e-12 75.1 113 37.2
Lalb_Chr25g0285651 Lupinus albus HOM05D000043 ORTHO05D000223 2.9e-12 74.7 114 37.7
Ah.09g233680 Amaranthus hybridus HOM05D000043 ORTHO05D000223 4.9e-12 73.9 61 49.2
Dinv13368 Davidia involucrata HOM05D000043 ORTHO05D000223 4.9e-12 73.9 114 35.1
FvH4_3g17830 Fragaria vesca HOM05D000043 ORTHO05D000223 4.9e-12 73.9 112 38.4
FAN11G3945 Fragaria x ananassa HOM05D000043 ORTHO05D000223 4.9e-12 73.9 112 38.4
Gohir.D13G154900 Gossypium hirsutum HOM05D000043 ORTHO05D000223 8.3e-12 73.2 114 36.0
HanXRQChr15g0495391 Helianthus annuus HOM05D000043 ORTHO05D000223 8.3e-12 73.2 113 37.2
PGR083G2534 Punica granatum HOM05D000043 ORTHO05D000223 8.3e-12 73.2 113 37.2
Rhsim06G0211300 Rhododendron simsii HOM05D000043 ORTHO05D000223 8.3e-12 73.2 129 34.1
Migut.M00696 Erythranthe guttata HOM05D000043 ORTHO05D000223 1.1e-11 72.8 112 37.5
Hma1.2p1_0325F.1_g125820 Hydrangea macrophylla HOM05D000043 ORTHO05D000223 1.1e-11 72.8 113 37.2
Lj3g0005405 Lotus japonicus HOM05D000043 ORTHO05D000223 1.1e-11 72.8 113 36.3
Medtr2g073510 Medicago truncatula HOM05D000043 ORTHO05D000223 1.1e-11 72.8 114 36.8
Nitab4.5_0000035g0380 Nicotiana tabacum HOM05D000043 ORTHO05D000223 1.1e-11 72.8 114 35.1
CsaV3_4G008270 Cucumis sativus L. HOM05D000043 ORTHO05D000223 1.4e-11 72.4 113 37.2
Lj3g0016511 Lotus japonicus HOM05D000043 ORTHO05D000223 1.4e-11 72.4 114 36.0
CANSAT56G2084 Cannabis sativa HOM05D000043 ORTHO05D000223 1.9e-11 72.0 114 36.0
CiPaw.11G158300 Carya illinoinensis HOM05D000043 ORTHO05D000223 1.9e-11 72.0 113 36.3
Phvul.005G077300 Phaseolus vulgaris HOM05D000043 ORTHO05D000223 1.9e-11 72.0 114 36.8
Psat5g234040 Pisum sativum HOM05D000043 ORTHO05D000223 1.9e-11 72.0 114 36.0
Actinidia12599 Actinidia chinensis HOM05D000043 ORTHO05D000223 2.4e-11 71.6 113 36.3
Glyma.12G233400 Glycine max HOM05D000043 ORTHO05D000223 2.4e-11 71.6 114 36.8
Peaxi162Scf00000g00728 Petunia axillaris HOM05D000043 ORTHO05D000223 2.4e-11 71.6 114 34.2
VMungo1080G1464 Vigna mungo HOM05D000043 ORTHO05D000223 3.2e-11 71.2 115 36.5
Lsat_1_v5_gn_7_101941 Lactuca sativa HOM05D000043 ORTHO05D000223 4.1e-11 70.9 113 36.3
CSS0049246 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D000223 5.4e-11 70.5 114 36.0
CsaV3_5G024680 Cucumis sativus L. HOM05D000043 ORTHO05D000223 5.4e-11 70.5 60 51.7
Potri.011G106300 Populus trichocarpa HOM05D000043 ORTHO05D000223 5.4e-11 70.5 113 36.3
Sed0009706 Sechium edule HOM05D000043 ORTHO05D000223 5.4e-11 70.5 112 35.7
Sopen12g006140 Solanum pennellii HOM05D000043 ORTHO05D000223 7.0e-11 70.1 116 34.5
ClCG07G010070 Citrullus lanatus HOM05D000043 ORTHO05D000223 9.2e-11 69.7 113 35.4
Sabra11G0074700 Salix brachista HOM05D000043 ORTHO05D000223 1.2e-10 69.3 113 35.4
Sabra11G0080200 Salix brachista HOM05D000043 ORTHO05D000223 1.2e-10 69.3 113 35.4
Solyc12g014360.2 Solanum lycopersicum HOM05D000043 ORTHO05D000223 1.2e-10 69.3 116 34.5
Ciclev10020789m.g Citrus clementina HOM05D000043 ORTHO05D000223 1.6e-10 68.9 114 34.2
MELO3C016109.2 Cucumis melo HOM05D000043 ORTHO05D000223 2.0e-10 68.6 113 34.5
Glyma.13G265600 Glycine max HOM05D000043 ORTHO05D000223 3.5e-10 67.8 114 36.0
THA.LOC104810432 Tarenaya hassleriana HOM05D000043 ORTHO05D000223 3.5e-10 67.8 113 34.5
CSS0023441 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D000223 4.6e-10 67.4 59 47.5
PGSC0003DMG400015340 Solanum tuberosum HOM05D000043 ORTHO05D000223 4.6e-10 67.4 113 33.6
PGSC0003DMG400007093 Solanum tuberosum HOM05D000043 ORTHO05D000223 6.0e-10 67.0 116 35.3
GSVIVG01014107001 Vitis vinifera HOM05D000043 ORTHO05D000223 6.0e-10 67.0 114 35.1
Cc05_g10790 Coffea canephora HOM05D000043 ORTHO05D000223 7.8e-10 66.6 114 33.3
Lj1A825G63 Lonicera japonica HOM05D000043 ORTHO05D000223 7.8e-10 66.6 112 33.9
CAN.G375.42 Capsicum annuum HOM05D000043 ORTHO05D000223 1.0e-09 66.2 114 35.1
DCAR_019608 Daucus carota HOM05D000043 ORTHO05D000223 1.3e-09 65.9 113 31.0
ECA236G3130 Erigeron canadensis HOM05D000043 ORTHO05D000223 1.3e-09 65.9 113 34.5
Gorai.007G331100 Gossypium raimondii HOM05D000043 ORTHO05D000223 2.3e-09 65.1 116 31.9
PGSC0003DMG400028639 Solanum tuberosum HOM05D000043 ORTHO05D000223 2.3e-09 65.1 116 31.9
Gohir.A11G288900 Gossypium hirsutum HOM05D000043 ORTHO05D000223 3.0e-09 64.7 116 31.9
Nitab4.5_0000347g0100 Nicotiana tabacum HOM05D000043 ORTHO05D000223 3.0e-09 64.7 61 49.2
Solyc07g062220.3 Solanum lycopersicum HOM05D000043 ORTHO05D000223 3.0e-09 64.7 116 34.5
Atru.chr2.2014 Acer truncatum HOM05D000043 ORTHO05D000223 5.0e-09 63.9 114 34.2
Lalb_Chr01g0016381 Lupinus albus HOM05D000043 ORTHO05D000223 5.0e-09 63.9 114 33.3
Peaxi162Scf00111g01476 Petunia axillaris HOM05D000043 ORTHO05D000223 5.0e-09 63.9 114 33.3
Carub.0003s1451 Capsella rubella HOM05D000043 ORTHO05D000223 6.6e-09 63.5 112 33.9
Manes.03G092500 Manihot esculenta HOM05D000043 ORTHO05D000223 6.6e-09 63.5 114 32.5
Sopen07g030500 Solanum pennellii HOM05D000043 ORTHO05D000223 6.6e-09 63.5 116 33.6
CARHR089790 Cardamine hirsuta HOM05D000043 ORTHO05D000223 1.1e-08 62.8 112 34.8
Sp3g13060 Schrenkiella parvula HOM05D000043 ORTHO05D000223 1.1e-08 62.8 112 33.0
THA.LOC104822571 Tarenaya hassleriana HOM05D000043 ORTHO05D000223 1.1e-08 62.8 113 32.7
HanXRQChr11g0331151 Helianthus annuus HOM05D000043 ORTHO05D000223 1.9e-08 62.0 113 31.9
arahy.Tifrunner.gnm1.ann1.24IXRB Arachis hypogaea HOM05D000043 ORTHO05D000223 2.5e-08 61.6 113 31.9
arahy.Tifrunner.gnm1.ann1.C6WPQR Arachis hypogaea HOM05D000043 ORTHO05D000223 2.5e-08 61.6 113 31.9
Gohir.D11G303600 Gossypium hirsutum HOM05D000043 ORTHO05D000223 3.3e-08 61.2 116 31.0
Nn3g21023 Nelumbo nucifera HOM05D000043 ORTHO05D000223 3.3e-08 61.2 110 33.6
Sc07g0002400 Simmondsia chinensis HOM05D000043 ORTHO05D000223 3.3e-08 61.2 114 32.5
TWI38G0702 Tripterygium wilfordii HOM05D000043 ORTHO05D000223 4.3e-08 60.8 113 32.7
A03p39000 Brassica napus HOM05D000043 ORTHO05D002584 5.6e-08 60.5 112 33.0
Thhalv10021040m.g Eutrema salsugineum HOM05D000043 ORTHO05D000223 5.6e-08 60.5 112 33.0
TAR627G0591 Trochodendron aralioides HOM05D000043 ORTHO05D000223 5.6e-08 60.5 110 33.6
AT3G14850 Arabidopsis thaliana HOM05D000043 ORTHO05D000223 7.3e-08 60.1 112 33.0
Haze_06258 Corylus avellana HOM05D000043 ORTHO05D000223 7.3e-08 60.1 93 36.6
HanXRQChr10g0305571 Helianthus annuus HOM05D000043 ORTHO05D000223 7.3e-08 60.1 113 31.0
Nitab4.5_0002801g0050 Nicotiana tabacum HOM05D000043 ORTHO05D000223 7.3e-08 60.1 57 43.9
QL05p046319 Quercus lobata HOM05D000043 ORTHO05D000223 7.3e-08 60.1 114 33.3
Lsat_1_v5_gn_5_126421 Lactuca sativa HOM05D000043 ORTHO05D000223 1.2e-07 59.3 113 31.0
AL3G27160 Arabidopsis lyrata HOM05D000043 ORTHO05D000223 1.6e-07 58.9 112 32.1
BolC3t16996H Brassica oleracea HOM05D000043 ORTHO05D000223 1.6e-07 58.9 112 32.1
Rhsim13G0191600 Rhododendron simsii HOM05D000043 ORTHO05D000223 1.6e-07 58.9 113 30.1
Aqoxy1G01949 Aquilegia oxysepala HOM05D000043 ORTHO05D000223 2.1e-07 58.5 112 32.1
BcaB04g20958 Brassica carinata HOM05D000043 ORTHO05D000223 2.1e-07 58.5 111 33.3
C03p47270 Brassica napus HOM05D000043 ORTHO05D002584 2.1e-07 58.5 112 32.1
Nitab4.5_0000347g0140 Nicotiana tabacum HOM05D000043 ORTHO05D000223 2.8e-07 58.2 114 31.6
BcaC09g48453 Brassica carinata HOM05D000043 ORTHO05D000223 4.7e-07 57.4 112 32.1
A01p38990 Brassica napus HOM05D000043 ORTHO05D000223 4.7e-07 57.4 112 32.1
C01p49600 Brassica napus HOM05D000043 ORTHO05D000223 4.7e-07 57.4 112 32.1
BolC1t04915H Brassica oleracea HOM05D000043 ORTHO05D000223 4.7e-07 57.4 112 32.1
BraA01t03945Z Brassica rapa HOM05D000043 ORTHO05D000223 4.7e-07 57.4 112 32.1
BraA03t13050Z Brassica rapa HOM05D000043 ORTHO05D000223 4.7e-07 57.4 112 31.2
QL02p092153 Quercus lobata HOM05D000043 ORTHO05D000223 4.7e-07 57.4 42 64.3
EL10Ac4g08406 Beta vulgaris HOM05D000043 ORTHO05D000223 6.2e-07 57.0 63 38.1
CSS0016183 Camellia sinensis var. sinensis HOM05D000043 ORTHO05D000223 8.1e-07 56.6 114 29.8
ECA234G3142 Erigeron canadensis HOM05D000043 ORTHO05D000223 8.1e-07 56.6 115 31.3
Actinidia12598 Actinidia chinensis HOM05D000043 ORTHO05D000223 1.1e-06 56.2 115 28.7
AUR62037386 Chenopodium quinoa HOM05D007922 ORTHO05D009490 1.1e-06 56.2 61 42.6
Manes.16G037300 Manihot esculenta HOM05D000043 ORTHO05D000223 1.1e-06 56.2 114 30.7
AUR62019626 Chenopodium quinoa HOM05D000043 ORTHO05D000223 1.8e-06 55.5 115 28.7
Rhsim06G0211200 Rhododendron simsii HOM05D000043 ORTHO05D000223 1.8e-06 55.5 115 28.7
AUR62039597 Chenopodium quinoa HOM05D000043 ORTHO05D000223 2.3e-06 55.1 115 28.7
Glyma.02G140100 Glycine max HOM05D000043 ORTHO05D000223 2.3e-06 55.1 116 29.3
Nitab4.5_0000316g0060 Nicotiana tabacum HOM05D000043 ORTHO05D000223 2.3e-06 55.1 66 39.4
vmacro11965 Vaccinium macrocarpon HOM05D000043 ORTHO05D000223 2.3e-06 55.1 115 29.6
Ciclev10033510m.g Citrus clementina HOM05D000043 ORTHO05D000223 3.1e-06 54.7 114 28.1
FAN16G0747 Fragaria x ananassa HOM05D000043 ORTHO05D000223 3.1e-06 54.7 42 61.9
Haze_06707 Corylus avellana HOM05D000022 ORTHO05D000071 4.0e-06 54.3 77 37.7
Medtr2g015720 Medicago truncatula HOM05D000043 ORTHO05D000223 4.0e-06 54.3 115 29.6
vmacro03935 Vaccinium macrocarpon HOM05D000043 ORTHO05D000223 4.0e-06 54.3 113 27.4
EL10Ac4g08405 Beta vulgaris HOM05D000043 ORTHO05D000223 5.2e-06 53.9 115 27.8
CiPaw.09G068400 Carya illinoinensis HOM05D000043 ORTHO05D000223 5.2e-06 53.9 114 30.7
Dinv13367 Davidia involucrata HOM05D000043 ORTHO05D000223 5.2e-06 53.9 113 29.2
PSO063G6886 Papaver somniferum HOM05D000043 ORTHO05D000223 5.2e-06 53.9 113 28.3
PSO832G2814 Papaver somniferum HOM05D000043 ORTHO05D000223 5.2e-06 53.9 113 28.3
Psat1g199960 Pisum sativum HOM05D000043 ORTHO05D000223 5.2e-06 53.9 116 28.4
Sed0005597 Sechium edule HOM05D000043 ORTHO05D000223 5.2e-06 53.9 113 30.1
TWI38G0504 Tripterygium wilfordii HOM05D000043 ORTHO05D000223 5.2e-06 53.9 114 30.7
Manes.17G054100 Manihot esculenta HOM05D000043 ORTHO05D000223 6.8e-06 53.5 114 28.9
Oeu062345.1 Olea europaea HOM05D000043 ORTHO05D000223 6.8e-06 53.5 113 28.3
TWI63G0937 Tripterygium wilfordii HOM05D000043 ORTHO05D000223 6.8e-06 53.5 114 30.7
Thhalv10017902m.g Eutrema salsugineum HOM05D000043 ORTHO05D000223 8.9e-06 53.1 63 36.5
QL05p046301 Quercus lobata HOM05D000043 ORTHO05D000223 8.9e-06 53.1 114 30.7


User provided reference genes

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