Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 1.7e-156 556.2 336 100.0
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 8.5e-140 500.7 288 92.0
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.8e-129 466.5 290 87.2
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 6.7e-121 438.0 293 81.2
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.5e-120 436.8 293 80.9
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 5.7e-120 434.9 295 80.3
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 2.2e-119 433.0 273 83.9
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 3.7e-119 432.2 293 79.9
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 7.0e-118 427.9 270 84.1
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 4.5e-117 425.2 267 82.4
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 1.9e-115 419.9 266 82.7
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 1.9e-115 419.9 259 82.2
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 1.6e-114 416.8 276 80.1
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.7e-114 416.0 286 76.6
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.7e-114 416.0 285 77.2
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 8.0e-114 414.5 267 79.8
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.0e-113 412.5 259 81.1
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 3.0e-113 412.5 285 76.5
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 3.0e-113 412.5 281 77.2
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 5.2e-113 411.8 284 77.5
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 6.8e-113 411.4 282 76.6
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 1.2e-112 410.6 284 77.1
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 1.5e-112 410.2 290 76.2
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 2.0e-112 409.8 261 80.1
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 7.5e-112 407.9 288 75.3
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 7.5e-112 407.9 263 80.6
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 9.8e-112 407.5 269 79.6
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 9.8e-112 407.5 286 75.5
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 1.3e-111 407.1 291 74.2
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.3e-111 407.1 263 80.6
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 1.3e-111 407.1 293 73.0
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 2.2e-111 406.4 273 79.1
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 2.2e-111 406.4 264 80.3
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 2.8e-111 406.0 287 74.6
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 2.8e-111 406.0 290 72.8
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 3.7e-111 405.6 280 75.0
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 4.8e-111 405.2 263 79.8
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 6.3e-111 404.8 278 77.7
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 1.4e-110 403.7 259 79.5
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.8e-110 403.3 268 78.0
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 1.8e-110 403.3 268 77.6
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 2.4e-110 402.9 287 74.9
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 1.2e-109 400.6 281 75.8
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 3.5e-109 399.1 262 78.2
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 4.5e-109 398.7 264 79.2
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 4.5e-109 398.7 273 76.9
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 4.5e-109 398.7 268 77.2
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 7.7e-109 397.9 272 77.2
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 1.0e-108 397.5 259 78.0
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 1.0e-108 397.5 279 75.3
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.3e-108 397.1 260 77.3
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.7e-108 396.7 271 76.0
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 2.3e-108 396.4 267 78.3
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 2.9e-108 396.0 256 78.5
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 2.9e-108 396.0 291 73.2
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 3.8e-108 395.6 266 75.9
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 3.8e-108 395.6 285 73.3
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 8.6e-108 394.4 262 77.5
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 1.1e-107 394.0 267 75.3
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 1.1e-107 394.0 266 75.2
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 1.1e-107 394.0 266 75.6
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 2.5e-107 392.9 281 73.0
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 4.2e-107 392.1 266 75.2
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 4.2e-107 392.1 265 75.8
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 5.5e-107 391.7 288 70.8
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 5.5e-107 391.7 256 78.9
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 7.2e-107 391.3 266 74.8
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 9.5e-107 391.0 326 65.0
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.2e-106 390.6 266 74.8
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 1.6e-106 390.2 266 74.8
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 1.6e-106 390.2 257 79.8
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 2.1e-106 389.8 275 72.7
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 2.8e-106 389.4 260 76.9
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 3.6e-106 389.0 273 74.4
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 4.7e-106 388.7 273 73.3
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 4.7e-106 388.7 266 74.8
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 6.1e-106 388.3 270 75.9
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 8.0e-106 387.9 259 76.8
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 1.8e-105 386.7 256 78.5
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 2.3e-105 386.3 272 72.8
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 1.5e-104 383.6 276 72.5
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 2.0e-104 383.3 266 73.3
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 3.7e-103 379.0 266 73.3
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 4.9e-103 378.6 346 62.1
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 8.3e-103 377.9 291 71.8
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 8.3e-103 377.9 256 77.3
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 7.0e-102 374.8 259 75.3
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 7.8e-101 371.3 275 72.7
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 3.9e-100 369.0 352 60.2
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.5e-99 367.1 258 74.0
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 2.5e-99 366.3 262 71.8
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 6.8e-97 358.2 238 78.2
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 6.8e-97 358.2 238 78.2
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 3.4e-96 355.9 261 69.7
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 8.3e-95 351.3 261 69.0
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 1.1e-94 350.9 231 77.5
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 2.3e-92 343.2 273 66.3
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 3.9e-92 342.4 238 72.7
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 9.5e-91 337.8 256 66.0
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 4.7e-90 335.5 437 47.8
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 2.6e-88 329.7 222 79.7
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 7.3e-83 311.6 220 75.0
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.2e-82 310.8 195 81.5
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.1e-81 307.8 205 79.5
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 4.9e-79 298.9 226 73.5
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 1.4e-78 297.4 267 56.9
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 1.6e-77 293.9 199 76.9
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 4.6e-77 292.4 252 59.9
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 6.6e-76 288.5 260 57.7
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 6.6e-76 288.5 182 80.8
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 1.4e-73 280.8 256 56.2
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.8e-73 280.4 234 63.7
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 2.6e-72 276.6 299 55.2
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 3.8e-71 272.7 277 50.9
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.4e-70 270.8 252 56.3
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.3e-60 236.9 164 76.8
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 8.1e-58 228.4 178 69.7
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 2.9e-55 219.9 242 49.6
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 5.4e-54 215.7 161 67.7
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 5.4e-54 215.7 161 69.6
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 2.3e-52 210.3 270 44.1
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 1.8e-49 200.7 270 44.4
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 9.3e-46 188.3 277 42.2
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 6.0e-45 185.7 153 63.4
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 3.3e-27 126.7 87 75.9
Thecc.07G131400 Theobroma cacao HOM05D005699 ORTHO05D007496 5.3e-25 119.4 96 67.7
Thecc.07G131900 Theobroma cacao HOM05D005699 ORTHO05D007496 1.6e-21 107.8 108 57.4
Thecc.07G131100 Theobroma cacao HOM05D005699 ORTHO05D007496 6.1e-21 105.9 84 67.9
MELO3C029615.2 Cucumis melo HOM05D005699 ORTHO05D170539 1.5e-14 84.7 57 78.9
SEGI_06384 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 3.2e-14 83.6 63 61.9
MELO3C032042.2 Cucumis melo HOM05D005699 ORTHO05D000044 4.2e-14 83.2 53 83.0
FvH4_7g00710 Fragaria vesca HOM05D005699 ORTHO05D046157 1.4e-09 68.2 48 62.5
FAN06G4357 Fragaria x ananassa HOM05D023873 ORTHO05D007496 1.0e-07 62.0 48 56.2
FAN10G4235 Fragaria x ananassa HOM05D030717 ORTHO05D046157 1.3e-07 61.6 94 40.4
Actinidia39422 Actinidia chinensis HOM05D005699 ORTHO05D056065 5.0e-07 59.7 42 64.3
BcaB02g07173 Brassica carinata HOM05D005699 ORTHO05D091938 1.9e-06 57.8 87 43.7
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 3.2e-06 57.0 210 28.6


User provided reference genes

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