Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 2.0e-283 978.4 476 100.0
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 1.5e-270 935.6 476 95.0
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 3.5e-240 834.7 476 84.2
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 3.8e-226 788.1 480 80.4
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.9e-226 787.7 479 80.2
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 7.9e-224 780.4 478 79.1
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 3.0e-223 778.5 476 77.5
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.8e-221 771.2 476 76.5
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.9e-220 767.3 518 74.7
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.4e-218 760.4 499 76.4
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.1e-217 760.0 516 74.4
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 4.2e-217 758.1 476 76.3
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.2e-216 756.5 476 76.3
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 3.0e-215 751.9 480 75.0
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 3.9e-215 751.5 480 75.6
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.9e-214 749.2 477 74.4
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.3e-213 746.5 478 74.3
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 2.1e-213 745.7 404 89.1
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 4.0e-212 741.5 478 74.7
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.3e-212 741.1 482 73.4
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 9.0e-212 740.3 477 74.2
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 9.0e-212 740.3 480 73.3
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.5e-211 739.6 482 73.2
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.0e-210 736.9 479 75.2
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 2.9e-210 735.3 476 74.4
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.8e-210 734.9 476 74.8
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 3.8e-210 734.9 482 74.9
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 4.9e-210 734.6 480 74.4
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.5e-210 734.2 477 75.1
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 5.5e-209 731.1 476 73.9
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.1e-209 730.7 477 74.8
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 6.0e-208 727.6 482 74.3
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.0e-207 725.3 478 72.0
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 5.1e-207 724.5 474 73.2
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 8.7e-207 723.8 479 72.7
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.4e-206 720.7 476 73.5
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 9.6e-206 720.3 480 74.4
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 8.2e-205 717.2 480 74.2
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 5.3e-204 714.5 478 72.6
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 9.0e-204 713.8 480 73.1
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 2.0e-203 712.6 481 70.9
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 3.4e-203 711.8 476 71.8
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 3.8e-202 708.4 481 72.8
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 3.8e-202 708.4 477 70.2
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 5.0e-202 708.0 476 72.5
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 2.5e-201 705.7 543 64.8
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 4.2e-201 704.9 486 70.0
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.5e-201 704.5 476 69.7
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 7.2e-201 704.1 481 72.8
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.6e-200 703.0 494 69.4
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 1.3e-199 699.9 529 66.0
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 2.3e-199 699.1 500 67.8
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 1.3e-197 693.3 479 69.7
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.6e-197 693.0 478 70.5
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 3.7e-197 691.8 482 70.5
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.4e-196 689.9 479 71.0
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 3.1e-196 688.7 477 71.1
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 9.0e-196 687.2 485 70.9
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.7e-194 682.9 521 64.3
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 8.5e-194 680.6 519 64.5
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.1e-193 680.2 483 68.9
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 5.5e-193 677.9 519 64.2
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 7.2e-193 677.6 519 64.2
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 1.4e-191 673.3 477 69.0
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 3.9e-191 671.8 482 68.3
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 6.7e-191 671.0 481 68.6
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.5e-190 669.8 519 63.2
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 2.5e-190 669.1 520 62.7
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 7.4e-190 667.5 481 68.4
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.3e-189 666.8 477 67.3
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.7e-189 666.4 482 67.8
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 6.3e-189 664.5 485 68.0
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.8e-188 662.9 478 67.2
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.1e-188 662.1 502 65.7
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 9.1e-188 660.6 478 68.2
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 9.1e-188 660.6 478 68.0
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.5e-187 659.8 436 72.0
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 4.5e-187 658.3 437 73.5
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 5.9e-187 657.9 477 67.9
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 2.9e-186 655.6 481 68.4
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.0e-186 654.8 435 73.1
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.9e-185 652.9 482 67.2
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 7.2e-185 651.0 477 67.1
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.1e-184 649.4 483 66.7
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 6.1e-184 647.9 542 60.5
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 7.9e-184 647.5 478 65.5
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 3.0e-183 645.6 477 66.7
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 3.3e-182 642.1 480 65.4
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.7e-181 639.8 479 66.4
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 6.3e-181 637.9 479 66.4
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.0e-180 634.4 487 65.7
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 5.9e-179 631.3 477 65.2
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.1e-177 627.1 477 65.8
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.1e-177 627.1 476 64.7
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.1e-177 627.1 477 65.4
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 2.1e-176 622.9 485 64.1
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 8.0e-176 620.9 441 69.8
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 5.2e-175 618.2 480 63.5
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 1.1e-174 617.1 484 63.6
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 5.7e-174 614.8 480 63.1
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.3e-173 613.6 480 63.5
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 3.7e-173 612.1 477 63.5
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 3.7e-173 612.1 480 62.9
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 3.7e-173 612.1 480 62.9
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.4e-172 610.1 480 63.3
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 2.4e-172 609.4 480 63.3
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 4.1e-172 608.6 482 63.9
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 7.0e-172 607.8 390 75.1
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 2.9e-170 602.4 479 63.0
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 6.5e-170 601.3 479 62.2
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 4.2e-169 598.6 480 62.3
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.6e-168 596.7 480 61.7
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.1e-168 596.3 394 73.6
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.2e-165 586.3 390 72.1
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 3.5e-163 578.9 390 72.1
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 4.0e-159 565.5 439 66.1
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 2.8e-157 559.3 437 64.1
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 8.3e-157 557.8 439 64.5
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.8e-154 548.9 460 59.6
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.0e-152 541.2 497 54.5
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 2.7e-147 526.2 290 83.8
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 3.5e-147 525.8 498 54.2
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.6e-147 525.4 400 64.2
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.5e-145 520.4 348 72.7
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 1.6e-144 516.9 282 84.0
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.0e-143 514.2 508 51.6
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 4.4e-142 508.8 409 62.3
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.4e-140 503.8 435 57.9
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 1.2e-136 490.7 461 54.9
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.8e-135 486.9 479 54.3
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 6.8e-135 485.0 323 69.0
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.2e-131 474.2 287 74.6
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.3e-122 443.4 286 69.2
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.1e-113 414.5 287 65.5
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 9.6e-113 411.4 529 43.9
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.4e-111 407.5 402 50.5
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.4e-108 397.5 298 63.4
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.9e-108 397.1 553 42.9
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.6e-99 367.5 304 55.6
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.5e-97 360.9 477 41.9
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.6e-96 357.5 299 62.2
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 4.8e-96 355.9 540 38.1
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 4.6e-83 312.8 378 48.7
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 7.7e-70 268.9 205 64.4
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 1.6e-67 261.2 188 68.1
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 5.2e-66 256.1 432 38.7
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.0e-54 217.6 179 62.0
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 1.8e-50 204.5 189 60.3
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.2e-43 181.8 189 55.6
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.3e-42 177.6 147 63.9
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.0e-41 174.5 120 75.8
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-41 174.5 144 60.4
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 2.0e-41 174.5 144 60.4
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.3e-40 171.8 95 82.1
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.9e-40 169.9 93 82.8
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-38 164.9 93 79.6
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.9e-38 162.9 128 57.0
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 5.0e-37 159.8 110 71.8
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 4.7e-35 153.3 86 81.4
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 4.7e-35 153.3 86 81.4
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 6.1e-35 152.9 174 48.3
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 3.4e-33 147.1 152 50.7
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 3.1e-26 124.0 137 49.6
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 1.5e-25 121.7 161 42.9
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 4.7e-19 100.1 73 69.9
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.9e-12 78.2 44 79.5


User provided reference genes

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