Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 4.1e-173 611.3 309 100.0
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 3.1e-128 462.2 311 80.1
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.7e-126 456.4 314 76.4
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 2.7e-108 396.0 313 68.7
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 2.6e-103 379.4 312 67.0
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 3.3e-98 362.5 310 63.2
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 5.7e-98 361.7 320 61.6
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 6.2e-97 358.2 328 60.7
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 5.3e-96 355.1 316 63.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 9.0e-96 354.4 318 61.3
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.8e-94 349.0 292 65.8
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 4.2e-93 345.5 319 59.9
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 9.3e-93 344.4 292 64.7
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 5.1e-91 338.6 307 59.3
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.9e-90 336.7 305 61.3
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 4.3e-90 335.5 314 57.6
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 1.3e-89 334.0 318 56.9
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 8.2e-89 331.3 315 57.8
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.4e-88 330.5 318 56.6
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.8e-88 330.1 318 56.3
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 3.1e-88 329.3 310 56.8
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 2.0e-87 326.6 308 58.1
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 3.4e-87 325.9 314 57.3
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 1.0e-86 324.3 315 60.0
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.4e-85 320.5 311 56.9
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.5e-85 319.7 311 57.2
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.2e-84 317.4 323 54.8
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.6e-84 317.0 327 54.4
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 2.1e-84 316.6 338 53.8
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 4.6e-84 315.5 346 52.6
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.8e-83 313.5 313 54.0
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 6.7e-83 311.6 301 55.8
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.7e-83 311.6 319 56.1
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 6.7e-83 311.6 319 56.1
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 1.1e-82 310.8 331 54.4
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.1e-82 310.8 316 55.4
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.1e-82 310.8 311 54.3
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 1.5e-82 310.5 320 55.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 2.0e-82 310.1 301 56.1
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.2e-81 306.6 311 56.3
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 2.8e-81 306.2 314 57.3
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 3.7e-81 305.8 319 53.9
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 4.8e-81 305.4 313 55.3
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 8.2e-81 304.7 311 55.9
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.1e-80 302.8 317 53.3
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 4.1e-80 302.4 311 55.6
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-79 300.8 289 57.8
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.0e-78 297.7 311 55.0
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 1.7e-78 297.0 318 51.3
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.7e-78 297.0 313 54.0
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 5.0e-78 295.4 317 54.3
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.4e-77 293.9 314 52.9
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 3.2e-77 292.7 318 52.2
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 5.5e-77 292.0 302 57.6
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.6e-76 290.4 310 51.6
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 4.7e-76 288.9 316 52.8
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.7e-76 288.9 318 52.2
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 6.7e-75 285.0 308 52.9
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 8.8e-75 284.6 318 50.9
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 8.8e-75 284.6 312 53.5
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.1e-74 284.3 310 50.6
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 1.5e-74 283.9 308 52.6
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 2.6e-74 283.1 308 52.9
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 3.3e-74 282.7 309 51.8
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 4.4e-74 282.3 306 52.6
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 5.7e-74 282.0 318 50.9
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 7.4e-74 281.6 316 50.6
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.3e-73 280.8 316 51.9
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 3.7e-73 279.3 305 49.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 3.7e-73 279.3 318 52.2
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 3.1e-72 276.2 313 49.2
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 7.0e-72 275.0 312 51.0
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.0e-71 273.5 313 48.9
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 2.0e-71 273.5 308 50.6
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 5.9e-71 271.9 305 51.1
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 1.0e-70 271.2 306 51.3
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.0e-70 271.2 319 52.7
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 7.2e-69 265.0 290 52.1
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 2.1e-68 263.5 285 52.6
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 1.4e-67 260.8 284 54.9
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.4e-67 260.8 313 47.9
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.0e-67 259.6 295 50.5
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 6.7e-67 258.5 313 49.2
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 2.6e-66 256.5 278 48.9
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 4.1e-64 249.2 297 49.2
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 7.0e-64 248.4 306 46.4
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 1.2e-63 247.7 338 47.3
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 4.5e-63 245.7 315 45.4
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 4.5e-63 245.7 310 45.5
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 7.7e-63 245.0 313 45.0
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.0e-62 244.6 308 45.1
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 1.3e-62 244.2 297 47.8
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.7e-62 243.8 238 58.0
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 3.2e-61 239.6 317 43.5
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 9.4e-61 238.0 312 44.9
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 6.1e-60 235.3 323 43.7
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.0e-59 234.6 291 48.5
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 8.8e-59 231.5 310 47.4
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 8.8e-59 231.5 296 44.3
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 8.8e-59 231.5 293 44.4
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 2.0e-58 230.3 293 44.4
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.0e-58 230.3 294 45.6
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 1.3e-57 227.6 302 44.7
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 6.3e-57 225.3 309 41.7
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.2e-54 216.9 308 43.2
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 3.2e-53 213.0 359 40.7
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 9.4e-53 211.5 314 43.0
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 4.4e-50 202.6 230 53.5
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 1.4e-48 197.6 297 42.4
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 4.3e-45 186.0 299 40.5
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 8.0e-44 181.8 300 42.7
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.4e-43 181.0 291 38.5
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.4e-43 181.0 291 38.5
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 2.9e-41 173.3 251 41.4
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 4.9e-41 172.6 181 58.6
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.7e-38 164.1 182 57.1
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 3.9e-38 162.9 259 43.2
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 6.6e-38 162.2 307 36.2
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.6e-31 141.0 337 31.8
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.2e-28 131.3 224 37.9
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 4.7e-28 129.4 177 37.3
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 7.1e-16 89.0 68 64.7
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 1.2e-15 88.2 121 34.7
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.1e-13 81.6 202 33.2
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 6.9e-11 72.4 153 31.4
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 8.9e-11 72.0 183 31.7
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 8.9e-11 72.0 179 33.5
RcHm_v2.0_Chr2g0102431 Rosa chinensis HOM05D002452 ORTHO05D006766 2.6e-10 70.5 63 61.9
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 4.2e-08 63.2 43 67.4


User provided reference genes

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