Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 4.0e-162 574.7 291 100.0
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 2.6e-153 545.4 290 94.8
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.7e-150 535.4 293 92.5
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 7.3e-148 527.3 288 90.6
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.7e-144 516.2 283 90.1
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 4.9e-144 514.6 283 89.8
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 3.2e-143 511.9 284 90.1
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.2e-142 510.0 282 89.4
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 7.8e-142 507.3 287 87.1
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 7.8e-142 507.3 290 86.9
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-141 506.9 282 90.4
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-141 506.5 281 89.7
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 2.3e-141 505.8 288 86.5
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 3.9e-141 505.0 281 89.7
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 5.1e-141 504.6 282 88.7
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 6.6e-141 504.2 285 87.0
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 6.6e-141 504.2 291 86.3
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 8.7e-141 503.8 290 87.2
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 8.7e-141 503.8 290 86.2
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-140 503.4 285 86.7
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-140 503.4 285 86.7
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.1e-140 503.4 285 86.7
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 1.1e-140 503.4 289 86.9
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.3e-140 501.9 289 85.1
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 5.6e-140 501.1 286 88.1
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 9.6e-140 500.4 290 85.2
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 9.6e-140 500.4 283 88.3
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.3e-139 500.0 290 84.5
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-139 499.6 291 84.9
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.6e-139 499.6 280 88.6
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 2.1e-139 499.2 291 84.5
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.1e-139 499.2 291 85.2
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 2.8e-139 498.8 285 87.7
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.8e-139 498.8 280 88.6
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 3.6e-139 498.4 291 85.9
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 3.6e-139 498.4 290 86.6
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.6e-139 498.4 290 86.2
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 3.6e-139 498.4 290 85.9
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 4.8e-139 498.0 288 86.1
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 4.8e-139 498.0 285 86.7
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 8.1e-139 497.3 286 86.7
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 8.1e-139 497.3 290 86.6
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-138 496.9 291 83.8
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 2.4e-138 495.7 283 87.3
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.1e-138 495.4 292 86.3
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.1e-138 495.4 290 85.9
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.1e-138 495.4 281 87.5
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 6.9e-138 494.2 290 85.2
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 6.9e-138 494.2 281 86.8
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 1.5e-137 493.0 280 86.1
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 2.0e-137 492.7 283 86.2
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 2.0e-137 492.7 282 86.5
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 2.0e-137 492.7 282 88.3
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 2.0e-137 492.7 283 87.3
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 2.6e-137 492.3 281 87.2
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.6e-137 492.3 291 86.6
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.4e-137 491.9 292 84.9
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 7.6e-137 490.7 280 85.7
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 7.6e-137 490.7 291 84.5
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 9.9e-137 490.3 276 86.6
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.3e-136 490.0 290 84.1
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 2.2e-136 489.2 275 88.4
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.2e-136 489.2 288 85.8
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 2.2e-136 489.2 290 85.2
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 2.9e-136 488.8 280 85.7
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.8e-136 488.4 285 85.6
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.8e-136 488.4 285 85.6
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 4.9e-136 488.0 290 84.1
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 6.4e-136 487.6 283 85.9
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 8.4e-136 487.3 290 83.4
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.1e-135 486.9 279 86.4
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.9e-135 486.1 289 84.8
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.4e-135 485.7 279 85.3
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.6e-134 483.0 281 85.8
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.5e-134 481.9 290 83.1
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 7.9e-134 480.7 294 82.3
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 7.9e-134 480.7 292 83.9
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.0e-133 480.3 291 83.5
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.8e-133 479.6 292 81.5
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 5.1e-133 478.0 289 83.4
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.5e-132 476.5 282 84.0
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 1.5e-132 476.5 292 82.2
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.5e-132 476.5 289 83.7
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.9e-132 476.1 281 83.3
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 1.9e-132 476.1 302 82.1
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.9e-132 476.1 289 83.4
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 5.6e-132 474.6 289 83.4
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 6.2e-131 471.1 284 84.5
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 6.9e-130 467.6 281 82.9
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 2.6e-129 465.7 303 79.5
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 2.6e-129 465.7 290 81.0
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 4.5e-129 464.9 285 83.2
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 5.8e-129 464.5 281 84.3
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 9.9e-129 463.8 288 81.9
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.3e-128 463.4 291 80.8
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 3.8e-128 461.8 282 84.8
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 4.9e-128 461.5 284 83.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.4e-127 459.9 254 89.4
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.9e-127 459.5 291 80.4
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.9e-127 459.5 291 80.1
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 2.5e-127 459.1 265 86.0
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.5e-127 459.1 293 80.9
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.5e-127 459.1 291 78.4
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.2e-126 456.8 289 80.3
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.1e-126 456.1 298 78.2
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 2.1e-126 456.1 292 79.8
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 4.6e-126 454.9 291 78.7
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 7.9e-126 454.1 285 80.0
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 8.7e-125 450.7 292 79.5
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 2.5e-124 449.1 288 79.2
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 3.3e-124 448.7 281 79.7
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 3.3e-124 448.7 295 78.3
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 9.6e-124 447.2 364 67.3
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.7e-123 445.3 263 85.6
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 3.1e-122 442.2 310 75.2
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 4.5e-121 438.3 293 77.5
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 5.8e-121 438.0 302 74.5
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 1.0e-120 437.2 281 77.6
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 1.7e-120 436.4 290 75.2
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 6.5e-120 434.5 276 79.3
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.2e-118 430.3 280 77.1
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.0e-117 427.2 260 81.9
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 2.2e-112 409.5 251 81.3
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 2.9e-112 409.1 221 90.0
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 3.8e-112 408.7 221 91.0
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 9.4e-111 404.1 280 75.0
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 2.3e-109 399.4 261 77.8
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.7e-109 397.9 218 89.0
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 6.7e-109 397.9 218 89.0
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.1e-108 397.1 221 88.2
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.1e-106 389.0 280 68.2
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.0e-105 386.3 298 71.1
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.0e-104 384.0 251 74.5
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 6.5e-104 381.3 250 74.0
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 5.5e-103 378.3 272 68.0
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 4.5e-97 358.6 200 87.5
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 5.9e-97 358.2 255 67.1
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 3.1e-90 335.9 182 92.9
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.1e-90 335.5 215 80.0
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 2.9e-88 329.3 182 88.5
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 2.7e-86 322.8 208 80.3
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 2.0e-81 306.6 174 88.5
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 3.6e-78 295.8 189 79.4
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 5.2e-77 292.0 221 72.4
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 3.3e-71 272.7 152 88.8
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.9e-64 249.2 194 66.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.3e-61 240.0 146 80.8
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.3e-56 224.2 209 60.8
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.6e-46 189.5 245 46.9
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 8.1e-46 188.3 119 76.5
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 7.5e-44 181.8 158 62.7
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 4.9e-43 179.1 136 70.6
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 3.9e-40 169.5 177 55.9
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.1e-39 167.9 105 78.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.6e-36 156.8 86 83.7
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 5.4e-34 149.1 96 76.0
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 4.3e-31 139.4 84 83.3
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.9e-29 132.1 88 73.9
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 3.4e-28 129.8 196 44.9
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 3.4e-28 129.8 298 32.2
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 7.8e-25 118.6 170 42.9
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 3.0e-24 116.7 66 87.9
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 3.0e-24 116.7 66 87.9
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.8e-19 99.8 62 83.9
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.8e-19 99.8 62 83.9
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 1.8e-16 90.9 53 81.1
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 1.1e-15 88.2 158 39.9
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 4.3e-15 86.3 85 55.3
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 3.1e-13 80.1 79 54.4
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.0e-11 75.1 92 46.7
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.7e-11 74.3 62 61.3
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 1.7e-11 74.3 59 71.2
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 4.9e-11 72.8 59 62.7
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-10 71.6 103 41.7
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 7.9e-09 65.5 43 76.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 3.9e-08 63.2 32 90.6
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 5.7e-07 59.3 57 50.9
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 1.6e-06 57.8 42 73.8
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.1e-06 57.4 38 73.7
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.2e-06 55.5 34 76.5


User provided reference genes

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