Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 1.3e-60 236.1 111 100.0
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 8.4e-44 180.3 111 81.1
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 1.3e-39 166.4 118 72.9
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 9.6e-32 140.2 129 58.9
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 2.4e-30 135.6 122 60.7
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.1e-30 135.2 129 58.1
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 6.9e-30 134.0 129 57.4
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 3.4e-29 131.7 129 57.4
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.4e-29 131.7 129 57.4
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 3.8e-20 101.7 80 68.8
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.1e-19 100.1 81 64.2
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 1.4e-19 99.8 81 64.2
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 1.4e-19 99.8 81 64.2
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 2.5e-19 99.0 85 64.7
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.2e-19 98.6 92 55.4
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 4.2e-19 98.2 92 55.4
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 4.2e-19 98.2 92 55.4
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 4.2e-19 98.2 72 66.7
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 7.1e-19 97.4 79 68.4
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 9.3e-19 97.1 80 65.0
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 3.5e-18 95.1 78 61.5
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 6.0e-18 94.4 81 69.1
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 3.0e-17 92.0 78 65.4
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 1.5e-16 89.7 89 58.4
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 3.3e-16 88.6 93 53.8
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 4.3e-16 88.2 71 62.0
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 7.4e-16 87.4 76 65.8
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 9.7e-16 87.0 72 61.1
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 9.7e-16 87.0 107 51.4
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 1.3e-15 86.7 107 51.4
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 2.2e-15 85.9 68 63.2
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 2.8e-15 85.5 100 49.0
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 2.4e-14 82.4 114 43.9
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 3.1e-14 82.0 108 51.9
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 4.1e-14 81.6 90 50.0
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 4.1e-14 81.6 71 59.2
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 5.3e-14 81.3 90 54.4
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 5.3e-14 81.3 71 57.7
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 5.9e-13 77.8 99 51.5
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 5.9e-13 77.8 82 54.9
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.3e-12 76.6 70 54.3
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 2.9e-12 75.5 80 53.8
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 2.9e-12 75.5 72 58.3
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 4.2e-11 71.6 70 52.9
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 5.5e-11 71.2 70 52.9
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 5.5e-11 71.2 70 52.9
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 5.5e-11 71.2 70 52.9
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 1.6e-10 69.7 67 52.2
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 1.6e-10 69.7 67 52.2
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 2.1e-10 69.3 72 51.4
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 2.7e-10 68.9 69 50.7
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 2.7e-10 68.9 69 50.7
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 2.7e-10 68.9 69 50.7
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 2.7e-10 68.9 67 52.2
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 4.6e-10 68.2 71 53.5
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 6.1e-10 67.8 84 52.4
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 6.1e-10 67.8 66 57.6
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 1.0e-09 67.0 67 50.7
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 1.0e-09 67.0 70 50.0
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 1.0e-09 67.0 80 53.8
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 1.0e-09 67.0 80 53.8
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 1.0e-09 67.0 80 53.8
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 1.4e-09 66.6 79 50.6
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 1.4e-09 66.6 79 50.6
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 2.3e-09 65.9 67 50.7
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 3.0e-09 65.5 80 52.5
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 3.9e-09 65.1 67 49.3
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 6.7e-09 64.3 82 48.8
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 6.7e-09 64.3 109 44.0
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 1.5e-08 63.2 74 50.0
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 1.9e-08 62.8 92 44.6
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 3.3e-08 62.0 80 45.0
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 3.7e-07 58.5 50 56.0
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 6.3e-07 57.8 98 40.8
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 8.2e-07 57.4 97 38.1
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 8.2e-07 57.4 74 47.3
Sc16g0006840 Simmondsia chinensis HOM05D007708 ORTHO05D009506 1.1e-06 57.0 61 54.1
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 1.4e-06 56.6 80 43.8
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 4.1e-06 55.1 61 52.5


User provided reference genes

Program Settings