Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1220400 Malus domestica HOM05D001593 ORTHO05D010032 1.1e-75 286.6 152 100.0
MD03G1220500 Malus domestica HOM05D001593 ORTHO05D010032 7.6e-64 247.3 156 87.2
Prupe.4G188200 Prunus persica HOM05D001593 ORTHO05D010032 2.3e-52 209.1 156 74.4
RcHm_v2.0_Chr5g0035101 Rosa chinensis HOM05D001593 ORTHO05D010032 3.3e-43 178.7 154 66.9
FvH4_3g20810 Fragaria vesca HOM05D001593 ORTHO05D010032 1.4e-41 173.3 148 68.2
FAN25G3755 Fragaria x ananassa HOM05D001593 ORTHO05D010032 2.4e-41 172.6 148 68.9
FAN16G0784 Fragaria x ananassa HOM05D001593 ORTHO05D010032 4.1e-41 171.8 148 68.2
ClCG10G006650 Citrullus lanatus HOM05D001593 ORTHO05D010032 1.4e-25 120.2 156 46.8
Sed0008194 Sechium edule HOM05D001593 ORTHO05D010032 5.9e-24 114.8 156 43.6
CsaV3_3G006040 Cucumis sativus L. HOM05D001593 ORTHO05D010032 1.0e-23 114.0 156 44.2
ClCG10G006610 Citrullus lanatus HOM05D001593 ORTHO05D010032 8.5e-23 110.9 160 41.2
CsaV3_3G006030 Cucumis sativus L. HOM05D001593 ORTHO05D010032 8.5e-23 110.9 158 42.4
MELO3C016546.2 Cucumis melo HOM05D001593 ORTHO05D010032 2.5e-22 109.4 158 43.7
HanXRQChr05g0156501 Helianthus annuus HOM05D001593 ORTHO05D010032 2.8e-21 105.9 146 42.5
Cc01_g01380 Coffea canephora HOM05D001593 ORTHO05D010032 3.6e-21 105.5 152 40.8
ECA246G1386 Erigeron canadensis HOM05D001593 ORTHO05D010032 8.0e-21 104.4 153 41.2
CiPaw.12G122400 Carya illinoinensis HOM05D001593 ORTHO05D010032 1.2e-19 100.5 151 43.7
Prupe.4G188300 Prunus persica HOM05D001593 ORTHO05D010032 1.2e-19 100.5 153 41.8
TWI38G2157 Tripterygium wilfordii HOM05D001593 ORTHO05D010032 2.0e-19 99.8 145 44.8
FvH4_3g20820 Fragaria vesca HOM05D001593 ORTHO05D010032 4.4e-19 98.6 154 41.6
Manes.03G115300 Manihot esculenta HOM05D001593 ORTHO05D010032 4.4e-19 98.6 153 41.2
FAN16G2191 Fragaria x ananassa HOM05D001593 ORTHO05D010032 9.8e-19 97.4 154 41.6
Eucgr.F03348 Eucalyptus grandis HOM05D001593 ORTHO05D010032 2.2e-18 96.3 152 41.4
Lsat_1_v5_gn_5_7021 Lactuca sativa HOM05D001593 ORTHO05D010032 2.2e-18 96.3 152 39.5
Actinidia05168 Actinidia chinensis HOM05D001593 ORTHO05D010032 4.9e-18 95.1 186 35.5
ECA246G2813 Erigeron canadensis HOM05D001593 ORTHO05D010032 6.3e-18 94.7 151 40.4
Potri.011G127800 Populus trichocarpa HOM05D001593 ORTHO05D010032 6.3e-18 94.7 152 38.2
Prupe.4G188400 Prunus persica HOM05D001593 ORTHO05D010032 8.3e-18 94.4 152 40.8
Eucgr.F03349 Eucalyptus grandis HOM05D001593 ORTHO05D010032 1.1e-17 94.0 152 38.2
Glyma.06G249800 Glycine max HOM05D001593 ORTHO05D010032 1.1e-17 94.0 151 41.7
Potri.001G405600 Populus trichocarpa HOM05D001593 ORTHO05D010032 1.8e-17 93.2 151 37.1
DCAR_009980 Daucus carota HOM05D001593 ORTHO05D010032 2.4e-17 92.8 152 40.8
QL08p018774 Quercus lobata HOM05D001593 ORTHO05D010032 3.1e-17 92.4 153 37.3
VMungo1127G1295 Vigna mungo HOM05D001593 ORTHO05D010032 5.4e-17 91.7 151 39.7
Lsat_1_v5_gn_5_7041 Lactuca sativa HOM05D001593 ORTHO05D010032 9.2e-17 90.9 143 37.8
VMungo1309G1650 Vigna mungo HOM05D001593 ORTHO05D010032 9.2e-17 90.9 155 40.0
Sabra16G0268900 Salix brachista HOM05D001593 ORTHO05D010032 2.7e-16 89.4 151 37.1
TPR.G7332 Trifolium pratense HOM05D001593 ORTHO05D010032 3.5e-16 89.0 157 37.6
Lalb_Chr03g0030461 Lupinus albus HOM05D001593 ORTHO05D010032 5.9e-16 88.2 155 34.8
Lj3g0024706 Lotus japonicus HOM05D001593 ORTHO05D010032 7.8e-16 87.8 153 37.3
Phvul.011G153600 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 7.8e-16 87.8 152 38.2
Aqoxy4G01373 Aquilegia oxysepala HOM05D001593 ORTHO05D010032 1.3e-15 87.0 135 35.6
Sabra16G0267000 Salix brachista HOM05D001593 ORTHO05D010032 1.7e-15 86.7 127 40.2
Lj3g0022181 Lotus japonicus HOM05D001593 ORTHO05D010032 6.6e-15 84.7 153 35.9
Lalb_Chr19g0134421 Lupinus albus HOM05D001593 ORTHO05D010032 2.5e-14 82.8 151 38.4
arahy.Tifrunner.gnm1.ann1.SVGI7B Arachis hypogaea HOM05D001593 ORTHO05D010032 5.6e-14 81.6 156 36.5
Psat4g174160 Pisum sativum HOM05D001593 ORTHO05D010032 7.3e-14 81.3 153 34.6
TPR.G23028 Trifolium pratense HOM05D001593 ORTHO05D010032 7.3e-14 81.3 154 37.0
Lalb_Chr17g0345681 Lupinus albus HOM05D001593 ORTHO05D010032 9.5e-14 80.9 158 36.7
SalBow7G3151 Salvia bowleyana HOM05D001593 ORTHO05D010032 1.2e-13 80.5 150 36.7
Lalb_Chr03g0030521 Lupinus albus HOM05D001593 ORTHO05D010032 1.6e-13 80.1 151 37.1
Medtr3g055120 Medicago truncatula HOM05D001593 ORTHO05D010032 1.6e-13 80.1 154 36.4
CDE05G2529 Ceratophyllum demersum HOM05D001593 ORTHO05D010032 4.7e-13 78.6 114 43.9
CSS0027856 Camellia sinensis var. sinensis HOM05D001593 ORTHO05D010032 8.0e-13 77.8 205 30.2
Medtr3g055130 Medicago truncatula HOM05D001593 ORTHO05D010032 1.0e-12 77.4 157 35.7
PSO832G0778 Papaver somniferum HOM05D001593 ORTHO05D010032 1.0e-12 77.4 144 35.4
Phvul.011G154100 Phaseolus vulgaris HOM05D001593 ORTHO05D010032 5.2e-12 75.1 151 33.1
SEGI_19703 Sequoiadendron giganteum HOM05D001593 ORTHO05D010032 9.8e-11 70.9 147 34.7
Atru.chr4.2935 Acer truncatum HOM05D000322 ORTHO05D000186 1.3e-10 70.5 160 29.4
SEGI_29216 Sequoiadendron giganteum HOM05D001593 ORTHO05D000001 1.3e-10 70.5 122 35.2
Sed0013638 Sechium edule HOM05D001593 ORTHO05D010032 1.7e-10 70.1 153 33.3
Cpa.g.sc9.111 Carica papaya HOM05D000322 ORTHO05D000186 4.1e-09 65.5 157 32.5
FAN21G2072 Fragaria x ananassa HOM05D001593 ORTHO05D010032 9.2e-09 64.3 51 68.6
MD11G1238400 Malus domestica HOM05D001593 ORTHO05D010032 2.0e-08 63.2 88 46.6
Lj3A721T46 Lonicera japonica HOM05D000322 ORTHO05D000186 4.6e-08 62.0 157 31.2
Lj6g0016390 Lotus japonicus HOM05D000322 ORTHO05D000186 5.9e-08 61.6 94 34.0
Phvul.002G209400 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 5.9e-08 61.6 93 36.6
Phvul.002G209500 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 5.9e-08 61.6 93 36.6
Lj6P649T18 Lonicera japonica HOM05D000322 ORTHO05D000186 7.8e-08 61.2 93 39.8
Mapoly0063s0018 Marchantia polymorpha HOM05D001593 ORTHO05D002007 7.8e-08 61.2 148 31.1
Cfa015459 Carpinus fangiana HOM05D000322 ORTHO05D000186 1.0e-07 60.8 156 31.4
Lj6P650T19 Lonicera japonica HOM05D000322 ORTHO05D000186 1.0e-07 60.8 93 38.7
Lj6g0015610 Lotus japonicus HOM05D000322 ORTHO05D000186 1.3e-07 60.5 139 30.2
COL.COLO4_34690 Corchorus olitorius HOM05D000322 ORTHO05D000186 1.7e-07 60.1 156 28.2
Duzib212G0928 Durio zibethinus HOM05D000322 ORTHO05D000186 1.7e-07 60.1 95 38.9
QL06p010987 Quercus lobata HOM05D000322 ORTHO05D000186 3.0e-07 59.3 156 30.8
PGSC0003DMG400003399 Solanum tuberosum HOM05D001593 ORTHO05D002007 3.0e-07 59.3 151 28.5
MD16G1160800 Malus domestica HOM05D000322 ORTHO05D000186 3.9e-07 58.9 159 27.7
Mapoly0063s0020 Marchantia polymorpha HOM05D001593 ORTHO05D010032 3.9e-07 58.9 150 29.3
PGSC0003DMG400041243 Solanum tuberosum HOM05D001593 ORTHO05D002007 3.9e-07 58.9 151 29.1
HPP92_011864 Vanilla planifolia HOM05D000322 ORTHO05D000186 3.9e-07 58.9 154 30.5
Dinv29700 Davidia involucrata HOM05D000322 ORTHO05D000186 5.0e-07 58.5 96 37.5
Lj3A721T47 Lonicera japonica HOM05D000322 ORTHO05D000186 5.0e-07 58.5 158 29.7
RcHm_v2.0_Chr5g0035111 Rosa chinensis HOM05D001593 ORTHO05D010032 5.0e-07 58.5 87 43.7
ATR0693G208 Amborella trichopoda HOM05D000322 ORTHO05D000186 6.6e-07 58.2 158 30.4
CiPaw.01G144000 Carya illinoinensis HOM05D000322 ORTHO05D000186 6.6e-07 58.2 154 31.2
Lalb_Chr12g0201041 Lupinus albus HOM05D000322 ORTHO05D000186 6.6e-07 58.2 94 34.0
Actinidia40313 Actinidia chinensis HOM05D000322 ORTHO05D000186 8.6e-07 57.8 156 29.5
Cfa015485 Carpinus fangiana HOM05D000322 ORTHO05D000186 8.6e-07 57.8 159 30.8
Haze_01132 Corylus avellana HOM05D000322 ORTHO05D000186 8.6e-07 57.8 95 38.9
Duzib151G0786 Durio zibethinus HOM05D000322 ORTHO05D000186 8.6e-07 57.8 156 28.2
Glyma.07G243500 Glycine max HOM05D000322 ORTHO05D000186 8.6e-07 57.8 98 36.7
Prupe.1G128800 Prunus persica HOM05D000322 ORTHO05D000186 8.6e-07 57.8 156 26.9
Lalb_Chr12g0201061 Lupinus albus HOM05D000322 ORTHO05D000186 1.1e-06 57.4 94 34.0
TWI09G0198 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 1.1e-06 57.4 152 25.7
HPP92_006905 Vanilla planifolia HOM05D000322 ORTHO05D000186 1.1e-06 57.4 155 31.0
arahy.Tifrunner.gnm1.ann1.DNS17T Arachis hypogaea HOM05D000322 ORTHO05D000186 1.5e-06 57.0 93 36.6
Dinv29696 Davidia involucrata HOM05D000322 ORTHO05D000186 1.5e-06 57.0 95 36.8
Lalb_Chr12g0201021 Lupinus albus HOM05D000322 ORTHO05D000186 1.5e-06 57.0 94 34.0
Eucgr.H03778 Eucalyptus grandis HOM05D000322 ORTHO05D000186 1.9e-06 56.6 156 26.9
Peaxi162Scf00073g01323 Petunia axillaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 156 28.8
Phvul.003G109200 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109300 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109301 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109400 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109401 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109500 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109600 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109601 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109602 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109603 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109800 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109801 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
Phvul.003G109802 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 1.9e-06 56.6 93 34.4
PGR031G1022 Punica granatum HOM05D000322 ORTHO05D000186 1.9e-06 56.6 96 35.4
arahy.Tifrunner.gnm1.ann1.4721MN Arachis hypogaea HOM05D000322 ORTHO05D000186 2.5e-06 56.2 94 35.1
Cc04_g12320 Coffea canephora HOM05D000322 ORTHO05D000186 2.5e-06 56.2 158 29.7
Eucgr.H03975 Eucalyptus grandis HOM05D000322 ORTHO05D000186 2.5e-06 56.2 156 26.9
Lj3A826T84 Lonicera japonica HOM05D000322 ORTHO05D000186 2.5e-06 56.2 96 33.3
Lalb_Chr12g0201051 Lupinus albus HOM05D000322 ORTHO05D000186 2.5e-06 56.2 94 34.0
MD16G1160700 Malus domestica HOM05D000322 ORTHO05D000186 2.5e-06 56.2 93 36.6
QL06p011085 Quercus lobata HOM05D000322 ORTHO05D000186 2.5e-06 56.2 96 35.4
MSTRG.10123 Avicennia marina HOM05D000322 ORTHO05D000186 3.3e-06 55.8 88 37.5
Ca_18955_v3 Cicer arietinum L. HOM05D001593 ORTHO05D002007 3.3e-06 55.8 113 27.4
Eucgr.A00142 Eucalyptus grandis HOM05D000322 ORTHO05D000186 3.3e-06 55.8 160 26.9
Glyma.17G030400 Glycine max HOM05D000322 ORTHO05D000186 3.3e-06 55.8 94 35.1
Lj6g0010757 Lotus japonicus HOM05D000322 ORTHO05D000186 3.3e-06 55.8 88 31.8
Phvul.009G253000 Phaseolus vulgaris HOM05D000322 ORTHO05D000186 3.3e-06 55.8 92 33.7
vmacro08083 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 3.3e-06 55.8 146 24.7
vmacro08088 Vaccinium macrocarpon HOM05D000322 ORTHO05D000186 3.3e-06 55.8 154 26.0
VMungo1215G2670 Vigna mungo HOM05D000322 ORTHO05D000186 3.3e-06 55.8 93 35.5
arahy.Tifrunner.gnm1.ann1.JU6U3Y Arachis hypogaea HOM05D000322 ORTHO05D000186 4.3e-06 55.5 94 34.0
Haze_01131 Corylus avellana HOM05D000479 ORTHO05D000186 4.3e-06 55.5 136 32.4
Glyma.07G243651 Glycine max HOM05D000322 ORTHO05D000186 4.3e-06 55.5 94 36.2
Glyma.15G146500 Glycine max HOM05D000322 ORTHO05D000186 4.3e-06 55.5 159 28.3
Solyc06g007860.1 Solanum lycopersicum HOM05D001593 ORTHO05D002007 4.3e-06 55.5 151 27.8
HPP92_000927 Vanilla planifolia HOM05D001593 ORTHO05D010032 4.3e-06 55.5 144 27.1
VMungo0251G2742 Vigna mungo HOM05D000322 ORTHO05D000186 4.3e-06 55.5 91 34.1
ATR0693G026 Amborella trichopoda HOM05D000322 ORTHO05D000186 5.6e-06 55.1 160 28.1
Ciclev10006674m.g Citrus clementina HOM05D000322 ORTHO05D000186 5.6e-06 55.1 157 27.4
Dinv29699 Davidia involucrata HOM05D000322 ORTHO05D000186 5.6e-06 55.1 95 34.7
Eucgr.A00159 Eucalyptus grandis HOM05D000322 ORTHO05D000186 5.6e-06 55.1 95 33.7
Glyma.09G040600 Glycine max HOM05D000322 ORTHO05D000186 5.6e-06 55.1 81 37.0
HanXRQChr13g0413421 Helianthus annuus HOM05D000322 ORTHO05D000186 5.6e-06 55.1 159 30.2
Lj6g0000876 Lotus japonicus HOM05D000322 ORTHO05D000186 5.6e-06 55.1 91 34.1
Manes.15G008600 Manihot esculenta HOM05D000322 ORTHO05D000186 5.6e-06 55.1 161 29.2
Peaxi162Scf00073g00917 Petunia axillaris HOM05D000322 ORTHO05D000186 5.6e-06 55.1 156 28.2
Thecc.04G291700 Theobroma cacao HOM05D000322 ORTHO05D000186 5.6e-06 55.1 159 28.3
arahy.Tifrunner.gnm1.ann1.UT7DLW Arachis hypogaea HOM05D000322 ORTHO05D000186 7.3e-06 54.7 93 35.5
CSS0049942 Camellia sinensis var. sinensis HOM05D000322 ORTHO05D000186 7.3e-06 54.7 92 38.0
ECA248G0481 Erigeron canadensis HOM05D000322 ORTHO05D000186 7.3e-06 54.7 92 37.0
FvH4_4g19010 Fragaria vesca HOM05D000322 ORTHO05D000186 7.3e-06 54.7 92 34.8
FvH4_4g19710 Fragaria vesca HOM05D000322 ORTHO05D000186 7.3e-06 54.7 93 34.4
FAN07G0553 Fragaria x ananassa HOM05D000322 ORTHO05D000186 7.3e-06 54.7 92 34.8
FAN12G0244 Fragaria x ananassa HOM05D000322 ORTHO05D000186 7.3e-06 54.7 93 34.4
FAN12G1466 Fragaria x ananassa HOM05D000322 ORTHO05D000186 7.3e-06 54.7 92 34.8
FAN12G2032 Fragaria x ananassa HOM05D000322 ORTHO05D000186 7.3e-06 54.7 92 34.8
Glyma.09G040400 Glycine max HOM05D000322 ORTHO05D000186 7.3e-06 54.7 139 29.5
Dinv29698 Davidia involucrata HOM05D000322 ORTHO05D000186 9.5e-06 54.3 95 34.7
FAN12G0093 Fragaria x ananassa HOM05D000322 ORTHO05D000186 9.5e-06 54.3 92 35.9
FAN22G1398 Fragaria x ananassa HOM05D000322 ORTHO05D000186 9.5e-06 54.3 93 35.5
Glyma.15G145600 Glycine max HOM05D000322 ORTHO05D000186 9.5e-06 54.3 139 30.2
Hma1.2p1_0078F.1_g040230 Hydrangea macrophylla HOM05D000322 ORTHO05D000186 9.5e-06 54.3 91 33.0
Rhsim04G0230800 Rhododendron simsii HOM05D000322 ORTHO05D000186 9.5e-06 54.3 149 26.2
Rhsim04G0241800 Rhododendron simsii HOM05D000322 ORTHO05D000186 9.5e-06 54.3 149 24.8
RcHm_v2.0_Chr4g0423961 Rosa chinensis HOM05D000322 ORTHO05D000186 9.5e-06 54.3 93 34.4
TPR.G8406 Trifolium pratense HOM05D001593 ORTHO05D002007 9.5e-06 54.3 122 25.4
TAR365G0633 Trochodendron aralioides HOM05D000322 ORTHO05D000186 9.5e-06 54.3 141 28.4


User provided reference genes

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