Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 4.8e-61 237.7 120 100.0
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 4.3e-46 188.0 114 85.1
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 1.6e-32 142.9 114 65.8
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 3.9e-31 138.3 114 63.2
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 2.0e-30 136.0 114 62.3
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 4.5e-27 124.8 126 53.2
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 1.7e-26 122.9 114 54.4
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 2.9e-26 122.1 127 54.3
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 1.1e-25 120.2 115 55.7
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.1e-25 120.2 125 51.2
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.5e-25 119.8 125 51.2
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 4.2e-25 118.2 114 54.4
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 7.2e-25 117.5 114 56.1
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 9.4e-25 117.1 125 50.4
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 1.6e-24 116.3 126 53.2
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 1.6e-24 116.3 126 53.2
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 3.6e-24 115.2 114 56.1
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 4.7e-24 114.8 114 53.5
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 6.1e-24 114.4 115 53.9
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 1.4e-23 113.2 115 53.0
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 1.4e-23 113.2 115 54.8
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 5.2e-23 111.3 125 47.2
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 5.2e-23 111.3 125 47.2
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 8.8e-23 110.5 107 52.3
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 8.8e-23 110.5 107 52.3
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 1.2e-22 110.2 114 50.9
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 1.2e-22 110.2 115 53.9
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.0e-22 109.4 114 52.6
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 2.6e-22 109.0 114 53.5
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.6e-22 109.0 114 53.5
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 2.6e-22 109.0 125 48.0
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 3.3e-22 108.6 115 52.2
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 4.4e-22 108.2 115 47.0
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 4.4e-22 108.2 114 50.9
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 9.7e-22 107.1 125 47.2
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 1.3e-21 106.7 114 49.1
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 1.7e-21 106.3 126 50.8
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 2.2e-21 105.9 130 46.9
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 2.8e-21 105.5 115 47.8
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 4.8e-21 104.8 115 47.8
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 4.8e-21 104.8 125 45.6
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 4.8e-21 104.8 125 46.4
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 8.3e-21 104.0 114 49.1
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 8.3e-21 104.0 115 48.7
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 1.4e-20 103.2 125 45.6
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 1.8e-20 102.8 115 47.8
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 2.4e-20 102.4 124 44.4
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 2.4e-20 102.4 116 46.6
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 2.4e-20 102.4 115 48.7
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 3.1e-20 102.1 109 50.5
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 3.1e-20 102.1 108 50.9
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 7.0e-20 100.9 107 47.7
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 7.0e-20 100.9 120 48.3
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 9.1e-20 100.5 111 50.5
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 2.0e-19 99.4 116 49.1
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 2.0e-19 99.4 115 52.2
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 3.5e-19 98.6 115 46.1
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 3.5e-19 98.6 107 47.7
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 5.9e-19 97.8 124 44.4
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 5.9e-19 97.8 115 47.0
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 5.9e-19 97.8 116 45.7
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 5.9e-19 97.8 112 47.3
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 7.7e-19 97.4 115 46.1
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 1.0e-18 97.1 129 42.6
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 1.7e-18 96.3 124 45.2
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 1.7e-18 96.3 111 50.5
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 1.7e-18 96.3 115 47.0
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 1.7e-18 96.3 108 48.1
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 2.2e-18 95.9 108 51.9
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 2.9e-18 95.5 116 44.8
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 3.8e-18 95.1 115 45.2
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 5.0e-18 94.7 108 50.9
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 5.0e-18 94.7 125 40.0
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 2.1e-16 89.4 112 52.7
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 2.1e-16 89.4 104 51.0
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 4.7e-16 88.2 105 52.4
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 4.7e-16 88.2 105 52.4
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 4.7e-16 88.2 109 51.4
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 8.0e-16 87.4 102 52.0
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 1.4e-15 86.7 106 51.9
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 1.8e-15 86.3 106 50.9
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 1.8e-15 86.3 106 50.9
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 1.8e-15 86.3 116 42.2
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 6.8e-15 84.3 116 41.4
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 8.8e-15 84.0 106 48.1
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 1.5e-14 83.2 116 44.8
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 2.0e-14 82.8 116 41.4
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 7.5e-14 80.9 115 40.9
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 1.3e-13 80.1 108 39.8
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 4.8e-13 78.2 106 43.4
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 5.4e-12 74.7 93 46.2
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 1.5e-09 66.6 81 45.7
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 1.2e-06 57.0 107 34.6
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 2.6e-06 55.8 39 66.7


User provided reference genes

Program Settings