Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 1.5e-105 386.3 219 100.0
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 5.8e-89 331.3 219 83.1
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 2.5e-76 289.3 220 75.5
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 3.3e-76 288.9 220 75.5
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 5.3e-74 281.6 220 72.3
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 5.3e-74 281.6 220 72.3
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 9.0e-74 280.8 220 72.3
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 3.4e-73 278.9 220 72.3
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 6.9e-66 254.6 228 66.7
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 3.4e-65 252.3 167 82.0
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 3.8e-64 248.8 222 67.1
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 1.9e-63 246.5 164 79.9
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 1.9e-63 246.5 220 66.4
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 4.2e-63 245.4 216 66.7
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.6e-62 243.4 220 65.5
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 1.6e-62 243.4 164 79.9
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 3.5e-62 242.3 167 78.4
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 3.5e-62 242.3 164 78.0
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 6.0e-62 241.5 166 78.9
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 7.9e-62 241.1 167 80.2
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 1.3e-61 240.4 220 65.0
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 2.3e-61 239.6 207 67.1
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 3.0e-61 239.2 220 64.5
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 3.9e-61 238.8 223 63.2
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 5.1e-61 238.4 209 66.5
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 5.1e-61 238.4 156 81.4
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 6.7e-61 238.0 202 67.8
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 6.7e-61 238.0 221 63.3
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 3.3e-60 235.7 226 63.7
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 3.3e-60 235.7 174 75.9
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 4.3e-60 235.3 227 63.9
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 4.3e-60 235.3 169 77.5
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 5.7e-60 235.0 161 78.3
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 7.4e-60 234.6 225 63.1
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 7.4e-60 234.6 225 63.1
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 7.4e-60 234.6 198 68.7
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 7.4e-60 234.6 222 63.1
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 9.6e-60 234.2 231 61.0
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 2.1e-59 233.0 161 77.6
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 2.1e-59 233.0 161 77.6
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 2.8e-59 232.6 161 77.6
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 2.8e-59 232.6 161 77.6
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 2.8e-59 232.6 161 77.6
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 2.8e-59 232.6 166 76.5
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 3.7e-59 232.3 169 76.3
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 3.7e-59 232.3 166 75.3
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 3.7e-59 232.3 166 75.3
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 3.7e-59 232.3 166 75.3
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 3.7e-59 232.3 202 65.3
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 4.8e-59 231.9 231 61.0
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 4.8e-59 231.9 221 63.8
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 4.8e-59 231.9 161 77.0
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 6.3e-59 231.5 168 76.2
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 1.1e-58 230.7 161 77.0
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 1.1e-58 230.7 221 63.3
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 1.4e-58 230.3 161 77.0
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 1.4e-58 230.3 161 77.0
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 3.1e-58 229.2 161 75.8
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 4.1e-58 228.8 169 75.7
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 5.3e-58 228.4 161 76.4
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 6.9e-58 228.0 221 62.9
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 6.9e-58 228.0 158 78.5
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 1.2e-57 227.3 151 81.5
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 1.5e-57 226.9 152 80.3
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 2.0e-57 226.5 202 64.9
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 2.6e-57 226.1 161 75.2
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 2.6e-57 226.1 228 61.4
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 4.5e-57 225.3 169 76.3
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 5.9e-57 224.9 165 73.3
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 1.0e-56 224.2 168 73.2
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 1.0e-56 224.2 156 78.2
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 1.3e-56 223.8 180 70.0
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 3.8e-56 222.2 208 62.0
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 6.5e-56 221.5 163 73.6
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 8.5e-56 221.1 163 75.5
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 8.5e-56 221.1 219 59.4
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 7.2e-55 218.0 239 56.5
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 7.2e-55 218.0 214 62.6
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 6.1e-54 214.9 149 77.2
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 6.1e-54 214.9 194 63.9
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 1.3e-51 207.2 199 61.8
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 2.2e-51 206.5 168 69.6
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 4.1e-50 202.2 166 71.1
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 6.9e-50 201.4 166 70.5
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 2.6e-49 199.5 165 67.3
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 1.4e-47 193.7 162 67.9
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 2.5e-47 193.0 167 64.7
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.6e-46 190.3 127 78.7
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 2.0e-44 183.3 142 69.0
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 1.8e-42 176.8 151 65.6
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 9.1e-42 174.5 165 61.8
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 9.1e-42 174.5 163 62.6
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 5.9e-41 171.8 228 53.9
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 3.6e-38 162.5 118 72.9
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 4.7e-38 162.2 107 81.3
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 2.0e-33 146.7 109 70.6
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 2.0e-28 130.2 82 85.4
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 1.3e-27 127.5 82 84.1
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 7.0e-26 121.7 87 72.4
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 2.1e-22 110.2 80 68.8
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 6.1e-22 108.6 88 65.9
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 5.7e-20 102.1 73 72.6
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 6.3e-19 98.6 114 45.6
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 2.9e-16 89.7 103 54.4
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 1.6e-14 84.0 58 75.9
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 4.9e-11 72.4 46 82.6
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 4.9e-11 72.4 46 82.6
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 1.4e-10 70.9 111 36.0
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 7.3e-07 58.5 35 85.7
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 2.8e-06 56.6 98 33.7
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 8.0e-06 55.1 147 34.0


User provided reference genes

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