Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 0.0e+00 1788.9 914 100.0
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 0.0e+00 1426.8 853 85.0
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1371.3 934 76.2
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 0.0e+00 1369.8 919 77.0
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1335.5 919 75.2
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1296.2 882 76.0
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 0.0e+00 1267.7 918 70.6
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1217.6 1002 66.8
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 0.0e+00 1192.2 909 67.4
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 0.0e+00 1153.3 922 65.6
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 0.0e+00 1149.4 919 64.6
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 0.0e+00 1139.4 958 65.7
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 0.0e+00 1127.1 923 62.6
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 0.0e+00 1124.8 923 62.8
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 0.0e+00 1118.2 880 65.9
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 0.0e+00 1115.1 872 65.9
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 0.0e+00 1114.8 909 63.3
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 0.0e+00 1113.6 874 65.3
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 0.0e+00 1108.6 917 62.2
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 0.0e+00 1107.4 914 62.6
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 0.0e+00 1107.0 922 62.0
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 0.0e+00 1105.9 737 77.5
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 0.0e+00 1100.5 911 62.1
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 0.0e+00 1100.5 921 60.7
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 0.0e+00 1095.1 937 60.0
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 0.0e+00 1093.6 881 63.2
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 0.0e+00 1085.5 919 61.4
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 0.0e+00 1079.7 966 58.1
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 1.3e-311 1073.2 917 61.0
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 9.4e-311 1070.1 971 59.8
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 2.8e-310 1068.5 901 62.4
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 1.4e-306 1056.2 918 59.9
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 3.5e-305 1051.6 910 60.4
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 4.6e-305 1051.2 908 59.8
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 1.7e-304 1049.3 910 59.3
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 2.8e-302 1042.0 911 59.8
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 3.6e-302 1041.6 914 59.8
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 6.6e-296 1020.8 910 58.9
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 1.5e-292 1009.6 908 58.4
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 2.1e-286 989.2 907 57.6
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 5.8e-284 981.1 786 63.4
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 1.7e-283 979.5 909 56.9
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 3.2e-282 975.3 907 56.3
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 7.1e-282 974.2 737 65.8
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 3.3e-279 965.3 909 56.7
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 5.6e-279 964.5 935 55.1
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 7.1e-274 947.6 922 54.6
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 1.3e-272 943.3 912 54.7
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 2.4e-269 932.6 914 52.6
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 3.4e-268 928.7 914 53.4
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 3.8e-267 925.2 916 53.5
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 2.5e-266 922.5 904 55.3
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 3.5e-265 918.7 922 53.4
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 3.3e-263 912.1 913 52.4
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 2.6e-260 902.5 912 50.8
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 1.2e-257 893.6 908 52.4
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 1.5e-255 886.7 907 52.3
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 9.7e-255 884.0 911 50.6
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 2.2e-254 882.9 870 51.5
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 2.2e-254 882.9 906 52.4
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 1.4e-253 880.2 926 51.7
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 9.1e-253 877.5 909 51.5
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 2.5e-250 869.4 904 51.9
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 7.2e-250 867.8 803 56.8
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 1.8e-248 863.2 903 50.3
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 5.7e-247 858.2 909 51.8
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 8.2e-246 854.4 907 51.4
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 1.2e-244 850.5 920 51.1
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 1.5e-244 850.1 911 49.6
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 2.9e-235 819.3 910 49.2
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 8.5e-235 817.8 933 49.1
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 8.0e-233 811.2 843 52.8
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 1.8e-229 800.0 760 53.8
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 7.2e-226 788.1 939 48.5
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 4.9e-222 775.4 842 50.1
AUR62015820 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.5e-215 753.8 908 47.2
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 7.5e-215 751.5 959 46.6
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 8.3e-198 694.9 649 58.2
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 1.6e-193 680.6 684 53.5
HPP92_008858 Vanilla planifolia HOM05D005193 ORTHO05D006316 2.1e-185 653.7 875 44.5
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 1.4e-181 641.0 966 39.2
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 3.6e-177 626.3 501 62.3
Pp3c16_8580 Physcomitrium patens HOM05D005193 ORTHO05D006316 7.9e-164 582.0 864 39.2
Mapoly0038s0063 Marchantia polymorpha HOM05D005193 ORTHO05D006316 8.7e-163 578.6 904 38.3
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 1.6e-161 574.3 514 58.4
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.4e-152 544.7 504 56.0
SMO115G0237 Selaginella moellendorffii HOM05D005193 ORTHO05D006316 3.9e-147 526.6 902 36.9
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 2.5e-138 497.3 433 60.3
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.8e-131 474.6 479 53.2
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 2.1e-124 451.1 466 53.0
CBR_g49709 Chara braunii HOM05D005193 ORTHO05D000048 1.7e-121 441.4 902 33.5
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 6.3e-113 412.9 415 51.6
AagrBONN_evm.TU.Sc2ySwM_344.2169 Anthoceros agrestis HOM05D005193 ORTHO05D006316 1.3e-110 405.2 639 38.8
Lalb_Chr17g0348631 Lupinus albus HOM05D005193 ORTHO05D006316 2.1e-108 397.9 384 56.0
ATR0585G046 Amborella trichopoda HOM05D005193 ORTHO05D006316 3.8e-102 377.1 357 52.4
arahy.Tifrunner.gnm1.ann1.89LBMG Arachis hypogaea HOM05D005193 ORTHO05D006316 1.8e-91 341.7 315 57.8
CDE02G4624 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.1e-88 332.4 379 48.8
Lj1C877G9 Lonicera japonica HOM05D005193 ORTHO05D006316 5.4e-88 330.1 269 62.8
Nitab4.5_0003450g0030 Nicotiana tabacum HOM05D005193 ORTHO05D006316 7.8e-87 326.2 406 45.3
SalBow8G4471 Salvia bowleyana HOM05D005193 ORTHO05D006316 2.2e-65 255.0 449 35.6
CDE02G0254 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 1.2e-58 232.6 286 45.5
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.4e-56 225.7 391 35.8
Nitab4.5_0000168g0230 Nicotiana tabacum HOM05D005193 ORTHO05D006316 1.4e-56 225.7 209 53.1
arahy.Tifrunner.gnm1.ann1.DP08C5 Arachis hypogaea HOM05D005193 ORTHO05D006316 6.0e-55 220.3 260 49.6
arahy.Tifrunner.gnm1.ann1.SW2PFC Arachis hypogaea HOM05D005193 ORTHO05D006316 6.0e-55 220.3 260 49.6
Solyc12g005090.3 Solanum lycopersicum HOM05D005193 ORTHO05D006316 1.3e-52 212.6 202 51.5
CAN.G1219.3 Capsicum annuum HOM05D005193 ORTHO05D006316 2.4e-43 181.8 224 46.0
Lsat_1_v5_gn_6_67380 Lactuca sativa HOM05D005193 ORTHO05D006316 1.3e-38 166.0 201 45.8
Lsat_1_v5_gn_9_67960 Lactuca sativa HOM05D005193 ORTHO05D006316 1.3e-38 166.0 201 45.8
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 8.7e-38 163.3 213 41.3
Peaxi162Scf00660g00119 Petunia axillaris HOM05D005193 ORTHO05D006316 8.7e-38 163.3 152 51.3
Gorai.011G223800 Gossypium raimondii HOM05D005193 ORTHO05D006316 6.9e-35 153.7 172 52.3
CDE02G4589 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 3.2e-32 144.8 245 39.2
Cpa.g.sc12.275 Carica papaya HOM05D005193 ORTHO05D006316 6.7e-30 137.1 95 63.2
ATR0585G123 Amborella trichopoda HOM05D005193 ORTHO05D006316 1.5e-26 125.9 176 44.3
MD16G1253600 Malus domestica HOM05D005193 ORTHO05D006316 1.3e-25 122.9 65 92.3
Sabra06G0024500 Salix brachista HOM05D005193 ORTHO05D006316 1.7e-25 122.5 84 69.0
EL10Ac4g07765 Beta vulgaris HOM05D005193 ORTHO05D006316 2.9e-25 121.7 185 39.5
CSS0028155 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.1e-24 119.8 89 67.4
CSS0039097 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.1e-24 119.8 89 67.4
Sabra16G0098300 Salix brachista HOM05D005193 ORTHO05D006316 1.1e-24 119.8 82 69.5
arahy.Tifrunner.gnm1.ann1.BLY3DW Arachis hypogaea HOM05D005193 ORTHO05D006316 1.2e-23 116.3 90 62.2
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 2.3e-22 112.1 92 58.7
Gohir.D10G199632 Gossypium hirsutum HOM05D005193 ORTHO05D006316 3.0e-22 111.7 143 47.6
AagrBONN_evm.TU.Sc2ySwM_362.1473 Anthoceros agrestis HOM05D005193 ORTHO05D006316 3.9e-22 111.3 110 51.8
ATR0585G071 Amborella trichopoda HOM05D005193 ORTHO05D006316 7.4e-21 107.1 129 41.1
Haze_09712 Corylus avellana HOM05D005193 ORTHO05D006316 1.3e-20 106.3 117 53.8
Aqoxy4G00029 Aquilegia oxysepala HOM05D002071 ORTHO05D002109 4.1e-19 101.3 97 46.4
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 4.1e-19 101.3 195 35.4
TPR.G2800 Trifolium pratense HOM05D005193 ORTHO05D006316 1.1e-16 93.2 116 47.4
GSVIVG01037691001 Vitis vinifera HOM05D005193 ORTHO05D006316 1.9e-16 92.4 118 52.5
SalBow8G0199 Salvia bowleyana HOM05D005193 ORTHO05D006316 2.7e-15 88.6 87 50.6
Gorai.001G274400 Gossypium raimondii HOM05D005193 ORTHO05D006316 2.3e-14 85.5 124 44.4
Oeu041837.1 Olea europaea HOM05D005193 ORTHO05D006316 5.2e-14 84.3 91 45.1
Gohir.D08G017066 Gossypium hirsutum HOM05D005193 ORTHO05D006316 1.1e-13 83.2 74 56.8
Eucgr.F03486 Eucalyptus grandis HOM05D005193 ORTHO05D006316 1.7e-12 79.3 113 43.4
Cpa.g.sc12.273 Carica papaya HOM05D005193 ORTHO05D006316 8.2e-12 77.0 120 39.2
SEGI_26698 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 3.5e-10 71.6 93 36.6
TPR.G2798 Trifolium pratense HOM05D005193 ORTHO05D006316 1.3e-09 69.7 66 54.5
SEGI_35263 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 8.5e-09 67.0 71 45.1
Hund02002 Selenicereus undatus HOM05D005193 ORTHO05D006316 9.4e-08 63.5 56 53.6
SEGI_10601 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 8.0e-07 60.5 79 38.0
SEGI_24122 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 3.0e-06 58.5 72 41.7
CDE02G4328 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 4.0e-06 58.2 78 35.9
SEGI_12195 Sequoiadendron giganteum HOM05D005193 ORTHO05D006316 6.7e-06 57.4 51 54.9


User provided reference genes

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