Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 2.4e-114 415.6 221 100.0
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 5.7e-92 341.3 210 87.6
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 4.5e-57 225.3 217 64.1
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 8.8e-53 211.1 207 64.7
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 7.7e-49 198.0 213 58.7
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 3.8e-48 195.7 217 58.5
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 8.5e-48 194.5 217 58.1
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 1.9e-47 193.4 219 58.0
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 5.2e-45 185.3 215 56.3
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 5.2e-45 185.3 215 56.3
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 2.0e-44 183.3 213 56.8
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 4.4e-44 182.2 210 59.0
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 9.8e-44 181.0 213 55.4
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 7.7e-41 171.4 213 52.6
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 2.3e-40 169.9 210 56.2
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 3.3e-39 166.0 209 52.2
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 1.2e-38 164.1 213 52.6
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 1.2e-38 164.1 211 51.2
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 3.6e-38 162.5 211 54.0
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 3.6e-38 162.5 206 54.4
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 6.1e-38 161.8 191 54.5
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 2.3e-37 159.8 208 51.9
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 1.5e-36 157.1 214 52.3
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 3.4e-36 156.0 209 50.2
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 1.7e-35 153.7 220 47.3
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 2.9e-35 152.9 219 46.6
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 2.4e-34 149.8 214 50.5
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 4.6e-33 145.6 207 46.4
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 4.6e-33 145.6 213 49.3
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 1.3e-32 144.1 217 47.0
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 1.7e-32 143.7 218 48.6
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 2.3e-32 143.3 204 48.0
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 5.0e-32 142.1 221 48.4
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 6.6e-32 141.7 212 50.0
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 6.6e-32 141.7 195 48.2
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 1.9e-31 140.2 201 48.3
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 2.5e-31 139.8 198 48.0
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 5.6e-31 138.7 213 50.7
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 1.6e-30 137.1 211 47.9
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 2.1e-30 136.7 208 44.2
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 3.1e-29 132.9 218 45.0
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 4.0e-29 132.5 207 48.8
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 2.6e-28 129.8 223 44.4
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 3.4e-28 129.4 210 45.2
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 3.4e-28 129.4 210 43.8
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 3.4e-28 129.4 202 48.0
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 4.4e-28 129.0 199 49.7
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 5.8e-28 128.6 202 48.0
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 1.3e-27 127.5 214 43.5
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 1.3e-27 127.5 210 44.3
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 2.2e-27 126.7 201 45.8
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 6.4e-27 125.2 202 48.0
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 1.1e-26 124.4 214 44.9
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 1.9e-26 123.6 208 43.8
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 2.7e-25 119.8 204 43.1
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 6.0e-25 118.6 212 40.6
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 1.0e-24 117.9 197 44.7
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 2.3e-24 116.7 206 42.2
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 3.0e-24 116.3 199 45.2
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 3.0e-24 116.3 209 41.1
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 3.9e-24 115.9 200 41.5
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 3.9e-24 115.9 206 40.8
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 5.0e-24 115.5 199 44.2
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 6.6e-24 115.2 210 43.3
Peaxi162Scf00235g00059 Petunia axillaris HOM05D007542 ORTHO05D009519 6.6e-24 115.2 201 42.3
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 8.6e-24 114.8 202 44.6
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 4.3e-23 112.5 234 41.9
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 9.5e-23 111.3 193 43.5
PSO541G2394 Papaver somniferum HOM05D007542 ORTHO05D009519 2.1e-22 110.2 231 38.5
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 8.1e-22 108.2 204 39.7
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 2.0e-20 103.6 199 41.7
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 2.0e-20 103.6 196 42.3
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 2.6e-20 103.2 204 42.2
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 2.6e-20 103.2 205 42.0
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 2.6e-20 103.2 201 42.8
Sc16g0005830 Simmondsia chinensis HOM05D007542 ORTHO05D009519 5.8e-20 102.1 203 40.4
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 7.5e-20 101.7 206 43.7
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 9.8e-20 101.3 189 41.3
Hma1.2p1_3935F.1_g338010 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 2.2e-19 100.1 152 44.7
Gohir.A01G083201 Gossypium hirsutum HOM05D007542 ORTHO05D009519 3.2e-18 96.3 106 55.7
Lj1P878T38 Lonicera japonica HOM05D007542 ORTHO05D009519 3.2e-18 96.3 162 46.3
Sopen10g002100 Solanum pennellii HOM05D007542 ORTHO05D009519 7.1e-18 95.1 103 54.4
Medtr3g053160 Medicago truncatula HOM05D007542 ORTHO05D009519 1.2e-17 94.4 203 38.9
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 2.1e-17 93.6 196 39.3
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 3.5e-17 92.8 209 38.3
arahy.Tifrunner.gnm1.ann1.T42YYR Arachis hypogaea HOM05D007542 ORTHO05D009519 5.1e-16 89.0 195 37.4
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 5.1e-16 89.0 200 36.0
arahy.Tifrunner.gnm1.ann1.C8UBJW Arachis hypogaea HOM05D007542 ORTHO05D009519 8.6e-16 88.2 202 39.6
Manes.15G067900 Manihot esculenta HOM05D007542 ORTHO05D009519 1.5e-15 87.4 154 44.2
EL10Ac4g07752 Beta vulgaris HOM05D007542 ORTHO05D009519 5.6e-15 85.5 209 35.9
CDE08G0529 Ceratophyllum demersum HOM05D007542 ORTHO05D009519 1.2e-12 77.8 94 48.9
Aqoxy1G03452 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 2.2e-11 73.6 124 41.9
VMungo0540G1120 Vigna mungo HOM05D007542 ORTHO05D009519 1.2e-09 67.8 202 34.7
Nitab4.5_0004829g0120 Nicotiana tabacum HOM05D007542 ORTHO05D009519 4.6e-09 65.9 185 30.8


User provided reference genes

Program Settings