Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 9.0e-123 443.7 245 100.0
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 2.1e-108 396.0 236 92.8
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 8.7e-102 374.0 233 87.6
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.3e-93 345.5 213 81.2
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 3.3e-93 345.5 214 82.7
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.3e-92 343.6 213 80.8
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.2e-92 342.8 214 81.3
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 4.8e-92 341.7 213 80.3
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 1.8e-91 339.7 215 80.0
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 5.3e-91 338.2 220 80.5
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 2.0e-90 336.3 212 80.7
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.0e-90 336.3 221 79.6
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 1.9e-88 329.7 220 75.5
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 4.2e-88 328.6 185 86.5
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 2.7e-87 325.9 217 75.1
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 6.1e-87 324.7 212 76.9
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 7.9e-87 324.3 216 78.2
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.4e-86 323.6 218 75.2
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 1.4e-86 323.6 218 75.2
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 3.9e-86 322.0 217 75.6
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 5.1e-86 321.6 220 74.1
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 5.1e-86 321.6 213 77.9
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 6.7e-86 321.2 221 77.4
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 8.8e-86 320.9 245 70.2
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 8.8e-86 320.9 220 74.5
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 1.1e-85 320.5 204 77.5
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.1e-85 320.5 218 74.3
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 2.6e-85 319.3 220 77.3
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 2.6e-85 319.3 216 74.1
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 3.3e-85 318.9 222 73.9
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 3.3e-85 318.9 212 74.5
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 2.2e-84 316.2 212 77.4
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 6.3e-84 314.7 222 73.9
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.1e-83 313.9 220 73.2
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.8e-83 313.2 219 73.1
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 3.1e-83 312.4 220 72.7
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 9.1e-83 310.8 214 72.4
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 9.1e-83 310.8 214 72.9
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 1.2e-82 310.5 214 75.7
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 1.5e-82 310.1 217 74.7
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 3.4e-82 308.9 218 73.9
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 5.9e-82 308.1 218 72.0
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 7.7e-82 307.8 214 75.7
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 7.7e-82 307.8 222 70.7
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.0e-81 307.4 210 74.3
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.3e-81 307.0 209 75.6
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.7e-81 306.6 203 74.4
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 2.2e-81 306.2 217 72.8
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 3.8e-81 305.4 209 75.6
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 3.8e-81 305.4 209 75.6
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 3.8e-81 305.4 209 75.6
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 3.8e-81 305.4 216 70.8
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 8.5e-81 304.3 215 71.6
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 1.1e-80 303.9 186 81.7
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 1.4e-80 303.5 184 81.5
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 1.4e-80 303.5 186 82.3
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 2.5e-80 302.8 181 82.9
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 4.2e-80 302.0 222 69.4
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 9.4e-80 300.8 214 74.3
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 9.4e-80 300.8 220 69.1
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.2e-79 300.4 203 73.9
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.2e-79 300.4 214 74.8
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 1.2e-79 300.4 221 69.7
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 1.8e-78 296.6 217 71.0
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 3.0e-78 295.8 222 70.7
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 5.2e-78 295.0 226 68.6
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 1.1e-77 293.9 216 69.0
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 9.7e-77 290.8 220 68.6
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 1.7e-76 290.0 205 72.2
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 1.7e-76 290.0 184 77.7
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 2.2e-76 289.7 214 70.6
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.2e-76 289.7 220 67.7
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 3.7e-76 288.9 219 67.1
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 3.7e-76 288.9 190 74.7
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 3.7e-76 288.9 266 59.8
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 4.8e-76 288.5 215 72.6
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.4e-75 287.0 214 67.3
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.4e-75 287.0 220 66.8
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 3.1e-75 285.8 190 74.2
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 5.3e-75 285.0 199 72.9
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 7.0e-75 284.6 186 77.4
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 9.1e-75 284.3 202 71.8
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.0e-74 283.1 209 69.4
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.6e-74 282.7 219 68.9
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 5.9e-74 281.6 218 68.8
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 7.7e-74 281.2 218 68.3
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.0e-73 280.8 234 63.2
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 1.0e-73 280.8 192 74.0
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 8.5e-73 277.7 223 63.2
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.1e-72 277.3 180 75.0
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 1.1e-72 277.3 212 70.3
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.5e-72 276.9 218 65.6
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 1.9e-72 276.6 217 65.9
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 2.5e-72 276.2 200 69.5
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 7.2e-72 274.6 188 72.3
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 7.2e-72 274.6 216 66.2
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 9.4e-72 274.2 211 68.2
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 2.1e-71 273.1 201 69.7
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 3.0e-70 269.2 170 78.2
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 2.0e-69 266.5 213 62.0
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 2.6e-69 266.2 212 62.7
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 3.3e-69 265.8 220 64.5
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 4.4e-69 265.4 217 68.2
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.3e-68 263.8 213 60.6
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 4.8e-68 261.9 194 69.6
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 6.3e-68 261.5 221 62.0
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.4e-67 260.4 215 63.7
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 3.1e-67 259.2 221 61.1
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 5.3e-67 258.5 219 63.0
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.3e-67 258.5 215 63.3
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 9.1e-67 257.7 219 63.5
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 2.7e-66 256.1 217 65.4
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 4.5e-66 255.4 213 64.3
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 4.5e-66 255.4 178 74.7
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.3e-65 253.8 229 60.7
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 1.7e-65 253.4 219 62.6
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.7e-65 253.4 219 58.9
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 2.9e-65 252.7 221 62.9
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 3.8e-65 252.3 213 57.7
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 5.0e-65 251.9 196 67.9
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 5.0e-65 251.9 213 64.3
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 5.0e-65 251.9 213 64.3
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 1.5e-64 250.4 219 62.6
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 1.5e-64 250.4 219 62.6
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 1.5e-64 250.4 219 62.6
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 1.5e-64 250.4 212 63.7
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 2.5e-64 249.6 190 68.9
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 2.5e-64 249.6 218 61.5
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 4.2e-64 248.8 219 62.1
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 7.2e-64 248.1 218 61.5
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 9.4e-64 247.7 219 62.1
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 9.4e-64 247.7 188 70.2
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 1.2e-63 247.3 219 62.1
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.2e-63 247.3 219 63.0
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 4.7e-63 245.4 219 62.1
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 1.4e-62 243.8 219 58.9
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 5.2e-62 241.9 144 80.6
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 2.0e-58 229.9 204 61.3
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 6.5e-57 224.9 187 64.7
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.2e-56 222.2 142 76.1
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 5.5e-56 221.9 166 70.5
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 5.5e-56 221.9 192 54.7
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 2.8e-52 209.5 205 52.7
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 4.1e-51 205.7 158 67.7
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 7.8e-50 201.4 215 51.2
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 7.3e-48 194.9 161 58.4
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 2.3e-46 189.9 216 56.5
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 1.1e-43 181.0 166 56.6
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 5.9e-42 175.3 106 76.4
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 7.8e-42 174.9 212 52.4
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 6.6e-41 171.8 153 60.1
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 2.8e-39 166.4 149 60.4
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 5.4e-35 152.1 101 73.3
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 5.0e-33 145.6 181 44.8
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 3.6e-31 139.4 108 70.4
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.5e-21 107.5 66 75.8
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.3e-20 104.4 90 53.3
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 3.5e-10 69.7 159 26.4
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 4.3e-08 62.8 196 26.0


User provided reference genes

Program Settings