Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 0.0e+00 1182.2 599 100.0
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 5.3e-294 1013.8 599 85.6
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.0e-256 889.0 601 74.7
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 2.6e-256 888.6 588 75.7
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.3e-255 883.6 600 75.2
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.1e-254 883.2 586 75.3
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 5.4e-254 880.9 600 75.2
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.3e-252 876.3 600 74.7
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 3.3e-251 871.7 594 73.6
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 8.0e-250 867.1 602 73.9
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 9.8e-248 860.1 591 72.4
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-247 859.8 600 73.8
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 6.4e-247 857.4 600 73.7
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.2e-245 853.2 600 73.3
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.7e-245 852.0 600 71.2
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.3e-241 839.0 615 70.6
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.9e-238 829.3 626 69.0
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 1.6e-237 826.2 602 69.6
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 7.3e-235 817.4 583 71.7
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.8e-233 812.8 594 68.4
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.2e-231 805.8 600 68.2
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 3.2e-230 802.0 583 69.8
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 7.1e-230 800.8 598 67.9
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.3e-228 796.6 600 67.3
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 6.6e-228 794.3 601 67.1
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 8.6e-228 793.9 594 66.8
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 8.6e-228 793.9 601 67.1
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.1e-227 793.5 601 66.9
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.1e-227 793.5 605 66.0
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 1.9e-227 792.7 591 67.0
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 3.3e-227 792.0 585 66.8
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 4.3e-227 791.6 596 67.8
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 9.6e-227 790.4 600 67.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.1e-226 789.3 593 66.4
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 3.6e-226 788.5 586 67.6
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 8.1e-226 787.3 519 73.8
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.4e-225 786.6 610 66.7
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 3.1e-225 785.4 584 67.6
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 3.1e-225 785.4 593 65.4
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.3e-223 780.0 590 66.4
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 2.9e-223 778.9 607 65.7
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.8e-223 778.5 606 66.2
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 3.2e-222 775.4 586 66.2
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 5.4e-222 774.6 588 65.6
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 7.1e-222 774.2 521 73.5
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 7.1e-222 774.2 598 66.1
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.6e-221 773.1 590 65.6
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 4.6e-221 771.5 606 65.2
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.7e-220 769.6 581 66.1
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 8.7e-220 767.3 540 70.4
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.5e-219 765.8 591 64.5
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 4.3e-219 765.0 599 66.8
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 9.6e-219 763.8 599 64.6
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.6e-218 763.1 606 64.5
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.1e-218 762.7 589 64.9
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 2.1e-218 762.7 588 65.5
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 8.1e-218 760.8 609 64.4
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 5.3e-217 758.1 789 52.9
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.6e-216 755.7 586 63.5
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 2.9e-215 752.3 600 65.5
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 2.4e-214 749.2 620 61.6
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 7.1e-214 747.7 516 71.3
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.6e-213 746.5 602 63.3
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 2.5e-211 739.2 598 61.0
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.3e-211 738.4 597 65.2
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 2.8e-210 735.7 529 68.2
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.4e-209 732.6 600 60.3
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.1e-209 732.3 589 63.3
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 4.0e-209 731.9 596 60.7
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 5.3e-209 731.5 600 60.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 9.0e-209 730.7 660 59.8
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 4.5e-208 728.4 606 59.9
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 9.9e-208 727.2 606 59.9
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.7e-207 726.5 581 61.3
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.9e-207 725.7 596 60.2
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 4.9e-207 724.9 593 59.9
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 3.2e-206 722.2 606 59.7
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.7e-205 719.2 575 61.6
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 3.5e-205 718.8 603 59.4
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.1e-203 713.8 597 60.1
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 3.7e-202 708.8 573 61.1
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 4.0e-201 705.3 574 60.8
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 5.3e-201 704.9 578 62.8
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 9.3e-198 694.1 555 63.4
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 6.0e-197 691.4 568 64.1
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.9e-195 686.4 524 63.4
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.4e-193 679.5 625 58.9
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 4.5e-184 648.7 488 66.2
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 5.9e-184 648.3 597 56.3
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 2.5e-179 632.9 528 60.6
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.4e-177 627.1 594 54.7
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.0e-176 623.2 598 53.5
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.2e-174 615.9 623 52.6
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 4.8e-162 575.5 473 63.8
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.5e-160 568.9 356 77.5
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 2.2e-159 566.6 572 51.6
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 5.7e-147 525.4 627 46.7
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 4.4e-131 472.6 377 62.3
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 8.9e-124 448.4 506 46.4
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.4e-123 446.4 447 51.2
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 9.2e-121 438.3 538 44.2
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.6e-120 437.6 561 44.0
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 1.1e-116 424.9 335 63.9
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 8.4e-114 415.2 304 67.1
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 5.4e-113 412.5 550 42.5
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.1e-96 357.5 285 63.2
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.9e-92 342.4 412 47.8
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 4.2e-89 333.2 269 64.3
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 4.0e-84 316.6 216 74.5
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 2.9e-82 310.5 216 74.1
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 8.2e-77 292.4 566 33.6
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 1.2e-72 278.5 380 37.4
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.9e-70 271.2 292 45.5
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 2.2e-66 257.7 180 73.9
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.3e-60 236.5 172 67.4
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.8e-42 177.2 123 65.0
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 5.5e-41 173.3 112 74.1
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.1e-36 157.5 126 67.5
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.1e-36 157.1 112 67.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.4e-36 156.8 122 67.2
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 8.8e-31 139.4 271 35.4
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.3e-26 125.6 98 57.1
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.9e-25 121.7 129 48.1
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.6e-24 118.6 128 50.0
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 8.0e-24 116.3 94 54.3
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.0e-23 115.9 573 22.3
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 1.0e-23 115.9 75 66.7
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.8e-23 115.2 82 62.2
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 3.0e-23 114.4 80 62.5
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.2e-21 108.2 141 39.7
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.7e-21 107.5 74 68.9
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.1e-20 105.9 216 32.4
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 4.3e-17 94.0 86 52.3
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 9.5e-17 92.8 123 46.3
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 4.4e-14 84.0 168 35.7
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 3.2e-12 77.8 72 50.0
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 5.4e-12 77.0 58 67.2
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 7.0e-12 76.6 62 54.8
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 6.0e-11 73.6 138 36.2
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 6.6e-10 70.1 472 23.5
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 5.6e-09 67.0 249 21.7
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 8.1e-08 63.2 60 55.0
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 4.0e-07 60.8 36 69.4


User provided reference genes

Program Settings