Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 2.8e-44 181.4 83 100.0
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 6.7e-38 160.2 78 91.0
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 3.3e-37 157.9 79 88.6
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.7e-36 155.6 79 87.3
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 1.7e-36 155.6 78 87.2
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 8.2e-36 153.3 79 83.5
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 1.1e-35 152.9 79 88.6
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 3.1e-35 151.4 79 87.3
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 3.1e-35 151.4 79 86.1
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 4.1e-35 151.0 79 84.8
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 1.2e-34 149.4 78 83.3
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 1.5e-34 149.1 78 84.6
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 2.6e-34 148.3 79 84.8
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 3.4e-34 147.9 79 86.1
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 5.9e-34 147.1 78 83.3
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 7.7e-34 146.7 79 83.5
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 1.3e-33 146.0 78 82.1
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 1.3e-33 146.0 78 82.1
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 2.9e-33 144.8 76 80.3
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 3.8e-33 144.4 79 82.3
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 5.0e-33 144.1 79 82.3
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 5.0e-33 144.1 79 78.5
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 6.5e-33 143.7 81 77.8
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 1.1e-32 142.9 78 80.8
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 1.9e-32 142.1 80 80.0
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 2.5e-32 141.7 79 79.7
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 3.2e-32 141.4 81 77.8
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 3.2e-32 141.4 86 75.6
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 4.2e-32 141.0 79 81.0
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 4.2e-32 141.0 78 74.4
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 5.5e-32 140.6 78 78.2
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 7.2e-32 140.2 72 86.1
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 9.4e-32 139.8 78 79.5
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 2.1e-31 138.7 81 76.5
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 2.1e-31 138.7 81 77.8
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 2.1e-31 138.7 78 78.2
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 4.7e-31 137.5 78 76.9
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 6.1e-31 137.1 78 78.2
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 7.9e-31 136.7 78 76.9
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 1.0e-30 136.3 81 72.8
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 1.0e-30 136.3 81 72.8
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 3.0e-30 134.8 85 72.9
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 3.9e-30 134.4 76 76.3
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 5.1e-30 134.0 83 75.9
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 5.1e-30 134.0 83 73.5
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.1e-29 132.9 86 72.1
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 3.3e-29 131.3 78 75.6
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 5.7e-29 130.6 78 69.2
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 5.7e-29 130.6 86 69.8
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 9.7e-29 129.8 80 73.8
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 9.7e-29 129.8 81 70.4
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 9.7e-29 129.8 79 72.2
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 1.3e-28 129.4 81 69.1
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 1.7e-28 129.0 86 68.6
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 2.8e-28 128.3 86 68.6
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 2.8e-28 128.3 86 68.6
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 2.8e-28 128.3 86 68.6
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 2.8e-28 128.3 86 68.6
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 8.2e-28 126.7 87 66.7
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-27 125.9 85 68.2
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-27 125.9 85 68.2
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 1.4e-27 125.9 85 68.2
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 4.1e-27 124.4 83 65.1
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 4.1e-27 124.4 78 66.7
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 4.1e-27 124.4 73 75.3
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 1.2e-26 122.9 79 70.9
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 1.2e-26 122.9 78 69.2
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 2.0e-26 122.1 78 67.9
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 4.5e-26 120.9 81 70.4
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 5.9e-26 120.6 81 69.1
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 5.9e-26 120.6 81 69.1
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 5.9e-26 120.6 81 69.1
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 5.9e-26 120.6 78 66.7
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 1.0e-25 119.8 79 67.1
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 1.0e-25 119.8 79 67.1
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 2.2e-25 118.6 81 69.1
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 2.2e-25 118.6 81 69.1
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 2.9e-25 118.2 78 65.4
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 3.8e-25 117.9 81 69.1
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 5.0e-25 117.5 81 67.9
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 6.5e-25 117.1 81 67.9
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 1.9e-24 115.5 79 65.8
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 1.9e-24 115.5 81 67.9
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 4.2e-24 114.4 81 66.7
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 5.5e-24 114.0 80 63.8
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 5.5e-24 114.0 80 60.0
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 3.6e-23 111.3 81 59.3
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 8.8e-22 106.7 71 70.4
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 2.2e-09 65.5 53 54.7
MBI18_g28520_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 1.8e-06 55.8 42 59.5
SEGI_31848 Sequoiadendron giganteum HOM05D003975 ORTHO05D009899 2.3e-06 55.5 47 51.1


User provided reference genes

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