Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 6.6e-47 190.3 91 100.0
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 1.2e-11 73.2 37 91.9
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 1.0e-10 70.1 36 88.9
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 1.2e-08 63.2 36 86.1
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 1.2e-08 63.2 36 86.1
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 1.2e-08 63.2 36 86.1
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 1.2e-08 63.2 36 86.1
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 1.2e-08 63.2 36 86.1
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 1.2e-08 63.2 36 86.1
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 1.2e-08 63.2 36 86.1
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 1.6e-08 62.8 36 83.3
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 1.6e-08 62.8 36 83.3
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 1.6e-08 62.8 36 83.3
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 2.1e-08 62.4 36 83.3
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 2.1e-08 62.4 36 83.3
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 2.7e-08 62.0 36 83.3
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 2.7e-08 62.0 37 78.4
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 2.7e-08 62.0 36 83.3
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 2.7e-08 62.0 32 84.4
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 2.7e-08 62.0 32 84.4
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 2.7e-08 62.0 36 83.3
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 2.7e-08 62.0 36 83.3
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 3.6e-08 61.6 36 83.3
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 3.6e-08 61.6 36 83.3
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 4.7e-08 61.2 36 80.6
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 4.7e-08 61.2 36 80.6
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 6.1e-08 60.8 36 80.6
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 6.1e-08 60.8 32 84.4
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 7.9e-08 60.5 42 71.4
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 7.9e-08 60.5 32 81.2
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 1.0e-07 60.1 36 80.6
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 1.0e-07 60.1 36 80.6
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 1.4e-07 59.7 36 77.8
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 1.4e-07 59.7 36 80.6
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 1.4e-07 59.7 39 71.8
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 2.3e-07 58.9 36 77.8
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 2.3e-07 58.9 32 78.1
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 2.3e-07 58.9 36 80.6
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 2.3e-07 58.9 36 80.6
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 2.3e-07 58.9 32 81.2
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 2.3e-07 58.9 32 81.2
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 2.3e-07 58.9 36 80.6
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 3.0e-07 58.5 36 77.8
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 3.9e-07 58.2 32 78.1
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 3.9e-07 58.2 33 75.8
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 5.1e-07 57.8 36 77.8
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 6.7e-07 57.4 36 75.0
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 6.7e-07 57.4 36 75.0
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 6.7e-07 57.4 32 75.0
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 8.8e-07 57.0 36 77.8
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 8.8e-07 57.0 36 77.8
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 72.2
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 72.2
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 72.2
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 77.8
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 72.2
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 72.2
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 72.2
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 8.8e-07 57.0 32 78.1
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 8.8e-07 57.0 36 72.2
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 1.1e-06 56.6 36 75.0
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.1e-06 56.6 36 72.2
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.1e-06 56.6 36 72.2
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.1e-06 56.6 36 72.2
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 1.1e-06 56.6 33 72.7
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 1.1e-06 56.6 33 72.7
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 1.1e-06 56.6 33 72.7
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 1.5e-06 56.2 35 77.1
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 1.5e-06 56.2 36 75.0
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 2.0e-06 55.8 36 75.0
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 2.0e-06 55.8 36 75.0
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 2.0e-06 55.8 33 69.7
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 2.0e-06 55.8 36 69.4
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 2.0e-06 55.8 36 69.4
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 5.7e-06 54.3 33 69.7
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 5.7e-06 54.3 36 72.2
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 7.4e-06 53.9 32 68.8
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 9.7e-06 53.5 36 66.7


User provided reference genes

Program Settings