Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 5.0e-51 204.1 102 100.0
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 1.1e-29 133.3 70 94.3
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 2.7e-28 128.6 70 90.0
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 3.5e-28 128.3 78 79.5
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 4.5e-28 127.9 79 79.7
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 4.5e-28 127.9 70 88.6
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 5.9e-28 127.5 72 90.3
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 5.9e-28 127.5 73 84.9
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 1.0e-27 126.7 70 88.6
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 1.7e-27 125.9 71 85.9
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 2.3e-27 125.6 70 87.1
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 2.3e-27 125.6 70 87.1
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 2.3e-27 125.6 70 87.1
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 2.3e-27 125.6 70 87.1
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 2.3e-27 125.6 70 87.1
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 2.3e-27 125.6 70 87.1
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 2.3e-27 125.6 70 87.1
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 2.9e-27 125.2 70 87.1
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 3.8e-27 124.8 70 84.3
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 5.0e-27 124.4 80 77.5
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 1.1e-26 123.2 70 84.3
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 1.1e-26 123.2 70 88.6
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 1.5e-26 122.9 70 85.7
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 1.5e-26 122.9 70 85.7
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 1.9e-26 122.5 70 85.7
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 2.5e-26 122.1 70 82.9
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 3.3e-26 121.7 70 82.9
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 4.2e-26 121.3 70 85.7
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 5.5e-26 120.9 70 81.4
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 7.2e-26 120.6 90 67.8
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 7.2e-26 120.6 70 81.4
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 9.5e-26 120.2 69 84.1
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 9.5e-26 120.2 70 81.4
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.2e-25 119.8 71 87.3
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 1.2e-25 119.8 68 82.4
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 2.1e-25 119.0 70 82.9
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 4.7e-25 117.9 69 78.3
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 4.7e-25 117.9 73 83.6
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 6.1e-25 117.5 70 78.6
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 8.0e-25 117.1 77 80.5
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 1.0e-24 116.7 70 80.0
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 1.0e-24 116.7 71 84.5
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 1.4e-24 116.3 73 82.2
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 1.4e-24 116.3 89 70.8
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 1.8e-24 115.9 72 84.7
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.8e-24 115.9 73 82.2
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 1.8e-24 115.9 72 80.6
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 4.0e-24 114.8 71 83.1
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 4.0e-24 114.8 73 79.5
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 5.2e-24 114.4 70 81.4
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 5.2e-24 114.4 70 81.4
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 5.2e-24 114.4 72 80.6
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 6.8e-24 114.0 73 78.1
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 8.9e-24 113.6 72 80.6
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 8.9e-24 113.6 73 80.8
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 8.9e-24 113.6 72 81.9
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 8.9e-24 113.6 72 77.8
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 8.9e-24 113.6 71 78.9
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 8.9e-24 113.6 71 81.7
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 8.9e-24 113.6 73 76.7
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 8.9e-24 113.6 73 76.7
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 8.9e-24 113.6 73 76.7
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 1.2e-23 113.2 62 88.7
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.0e-23 112.5 73 78.1
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 2.6e-23 112.1 70 80.0
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 2.6e-23 112.1 70 80.0
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 2.6e-23 112.1 70 80.0
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 3.4e-23 111.7 70 77.1
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 4.4e-23 111.3 73 78.1
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 5.7e-23 110.9 70 78.6
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 5.7e-23 110.9 70 78.6
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 7.5e-23 110.5 68 79.4
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 7.5e-23 110.5 68 79.4
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 9.8e-23 110.2 70 78.6
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 9.8e-23 110.2 73 76.7
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 9.8e-23 110.2 72 77.8
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 9.8e-23 110.2 73 76.7
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 9.8e-23 110.2 72 79.2
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.7e-22 109.4 70 77.1
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 2.2e-22 109.0 65 86.2
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.2e-22 109.0 73 78.1
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 2.2e-22 109.0 86 65.1
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.8e-22 108.6 73 78.1
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 3.7e-22 108.2 81 66.7
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 3.7e-22 108.2 69 75.4
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 4.9e-22 107.8 72 75.0
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 4.9e-22 107.8 72 75.0
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 6.3e-22 107.5 71 71.8
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 8.3e-22 107.1 72 75.0
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 1.4e-21 106.3 71 73.2
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 4.1e-21 104.8 64 82.8
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 4.1e-21 104.8 69 73.9
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 5.4e-21 104.4 69 73.9
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 5.4e-21 104.4 61 83.6
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 7.0e-21 104.0 69 75.4
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 1.2e-20 103.2 64 81.2
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 3.5e-20 101.7 64 81.2
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.0e-19 100.1 68 73.5
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 1.7e-19 99.4 73 67.1
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 8.6e-19 97.1 50 96.0
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 9.5e-18 93.6 63 69.8
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 2.1e-17 92.4 64 70.3
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 1.2e-15 86.7 78 61.5
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 1.5e-15 86.3 59 67.8
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 1.4e-13 79.7 59 69.5
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 3.5e-12 75.1 65 66.2
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 5.0e-11 71.2 71 54.9
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 3.6e-09 65.1 37 81.1


User provided reference genes

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