Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 1.9e-234 815.5 409 100.0
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 1.1e-194 683.3 410 84.9
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 8.1e-161 570.9 409 72.6
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 5.1e-155 551.6 403 71.0
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 5.3e-152 541.6 399 71.2
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.6e-145 520.0 422 64.5
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.1e-144 517.3 421 64.6
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 2.9e-142 509.2 426 63.1
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 3.8e-142 508.8 420 63.6
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 3.8e-142 508.8 420 63.6
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 1.1e-141 507.3 418 64.8
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 1.4e-141 506.9 387 66.4
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 4.2e-141 505.4 398 65.3
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.2e-140 503.8 414 64.3
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 1.6e-140 503.4 404 64.9
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 1.6e-140 503.4 400 65.5
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 6.1e-140 501.5 406 64.3
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 6.1e-140 501.5 412 64.1
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.8e-139 500.0 406 64.3
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 2.3e-139 499.6 426 62.7
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 9.0e-136 487.6 409 61.9
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 1.5e-135 486.9 407 62.7
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 1.5e-135 486.9 403 61.8
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 1.5e-135 486.9 413 62.0
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 4.5e-135 485.3 369 66.7
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 5.9e-135 485.0 392 63.0
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.3e-134 483.8 414 62.1
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.7e-134 483.4 387 65.1
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.9e-134 482.6 419 61.1
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 8.5e-134 481.1 401 62.8
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 1.4e-133 480.3 413 61.0
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 2.5e-133 479.6 387 63.0
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.4e-133 477.6 384 63.5
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 9.4e-133 477.6 400 62.0
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 3.9e-131 472.2 380 65.0
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 2.5e-130 469.5 404 59.9
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 2.5e-130 469.5 387 63.3
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 9.7e-130 467.6 412 58.5
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.8e-129 466.1 392 61.2
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 5.3e-128 461.8 419 59.2
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 9.1e-128 461.1 386 64.5
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 9.1e-128 461.1 375 62.9
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 1.0e-126 457.6 417 58.3
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.7e-126 456.8 387 59.9
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 3.8e-126 455.7 370 64.6
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 5.0e-126 455.3 402 61.2
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 6.5e-126 454.9 393 60.6
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 2.7e-124 449.5 412 60.9
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 1.0e-123 447.6 406 59.1
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 8.8e-123 444.5 350 65.1
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.5e-122 443.7 411 56.4
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 7.4e-122 441.4 412 58.0
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 3.7e-121 439.1 392 60.2
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 3.1e-120 436.0 361 64.3
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.1e-120 435.6 411 56.9
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 9.1e-120 434.5 418 55.5
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 2.0e-119 433.3 429 55.2
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 2.6e-119 433.0 428 55.1
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 2.6e-119 433.0 395 58.5
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.0e-118 431.0 335 70.1
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 3.2e-117 426.0 416 56.7
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 5.5e-117 425.2 390 58.2
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 1.2e-116 424.1 367 58.6
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 2.1e-116 423.3 307 66.4
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 3.6e-116 422.5 373 60.3
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 4.7e-116 422.2 404 55.7
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 6.1e-116 421.8 271 73.4
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 3.3e-114 416.0 437 52.9
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 8.2e-113 411.4 374 57.2
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 1.4e-112 410.6 425 51.8
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 4.1e-112 409.1 421 52.5
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.6e-111 407.1 424 52.1
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 2.6e-111 406.4 426 50.7
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 3.5e-111 406.0 354 63.3
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 1.3e-110 404.1 412 52.7
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 2.9e-110 402.9 399 54.1
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 6.5e-110 401.7 416 52.4
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 1.1e-109 401.0 427 50.8
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.1e-109 401.0 425 51.8
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.5e-109 400.6 408 52.7
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 9.4e-109 397.9 427 51.5
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 9.4e-109 397.9 390 53.8
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.0e-107 394.4 386 57.0
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.2e-106 391.0 463 50.3
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.8e-104 383.6 421 50.8
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.8e-104 383.6 406 51.5
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 3.1e-104 382.9 402 54.7
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 7.0e-104 381.7 402 54.7
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.3e-102 377.5 415 48.2
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.5e-101 374.0 383 54.6
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 5.5e-101 372.1 366 54.1
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 4.7e-100 369.0 367 54.2
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.8e-99 367.1 384 55.7
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 3.4e-98 362.8 256 71.5
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 4.4e-98 362.5 410 48.5
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.4e-98 362.5 359 52.6
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 1.7e-97 360.5 283 64.0
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 2.2e-97 360.1 311 64.0
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 3.7e-97 359.4 377 49.1
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 2.4e-96 356.7 233 68.7
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 2.7e-95 353.2 392 46.7
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 2.3e-94 350.1 364 52.7
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 1.0e-91 341.3 388 47.4
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 4.0e-91 339.3 402 47.5
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 2.4e-88 330.1 401 46.4
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 5.9e-87 325.5 268 56.7
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 5.9e-87 325.5 308 53.6
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.7e-84 315.8 368 48.1
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.7e-81 307.4 357 48.2
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 2.9e-81 306.6 297 51.9
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 1.2e-79 301.2 267 53.2
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 1.0e-78 298.1 321 54.2
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.0e-78 298.1 315 48.3
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 3.3e-77 293.1 192 68.8
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 4.7e-76 289.3 372 43.5
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 3.1e-75 286.6 323 47.1
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 3.4e-74 283.1 195 69.2
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 8.3e-73 278.5 194 70.6
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 1.9e-64 250.8 242 62.0
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 8.6e-62 241.9 294 41.2
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.8e-60 236.9 179 59.2
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 2.5e-53 213.8 111 87.4
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.6e-52 211.1 134 70.1
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 3.6e-52 209.9 111 84.7
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 8.1e-52 208.8 111 86.5
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 4.8e-44 183.0 216 51.9
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.4e-43 180.6 228 46.5
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 7.6e-42 175.6 228 50.9
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 8.7e-38 162.2 104 79.8
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 8.1e-36 155.6 112 66.1
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.0e-33 148.7 125 54.4
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 2.1e-31 141.0 108 58.3
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 6.7e-30 136.0 85 69.4
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.2e-26 125.2 101 56.4
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 7.6e-26 122.5 182 49.5
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.1e-24 118.6 101 51.5
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.3e-22 110.9 89 60.7
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.3e-21 107.1 85 48.2
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 3.1e-19 100.5 101 53.5
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 2.5e-16 90.9 139 51.1
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 1.3e-12 78.6 42 88.1
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.4e-11 75.1 141 44.7
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 2.4e-11 74.3 145 44.1
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.4e-08 62.4 43 62.8
AT3G57110 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 3.6e-07 60.5 144 33.3
VMungo1080G0356 Vigna mungo HOM05D005177 ORTHO05D006175 6.7e-06 56.2 119 41.2


User provided reference genes

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