Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.4e-54 216.1 109 100.0
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.2e-39 166.4 157 61.8
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 6.1e-39 164.1 157 61.8
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 3.5e-34 148.3 157 54.8
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.2e-33 145.6 157 54.1
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.1e-32 143.3 157 53.5
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.9e-32 142.5 159 51.6
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.9e-32 142.5 156 53.2
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.2e-32 140.6 156 52.6
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.2e-31 139.8 157 52.2
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.2e-31 139.8 157 52.2
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 3.6e-31 138.3 156 51.9
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 4.7e-31 137.9 157 51.0
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 4.7e-31 137.9 143 60.1
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 6.1e-31 137.5 157 51.0
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.4e-30 136.3 157 50.3
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.8e-30 136.0 157 52.9
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.0e-30 135.2 158 50.6
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 4.0e-30 134.8 157 51.6
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 6.8e-30 134.0 156 50.0
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 6.8e-30 134.0 156 49.4
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 6.8e-30 134.0 157 49.7
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 6.8e-30 134.0 157 49.7
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 6.8e-30 134.0 157 49.7
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 8.8e-30 133.7 158 49.4
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.2e-29 133.3 154 51.3
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.2e-29 133.3 157 49.7
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.5e-29 132.9 156 48.7
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 1.5e-29 132.9 156 48.7
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.5e-29 132.9 157 49.0
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.5e-29 132.9 157 49.0
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.5e-29 132.9 157 50.3
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.5e-29 132.9 157 47.8
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 2.0e-29 132.5 140 54.3
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.0e-29 132.5 157 47.8
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.0e-29 132.5 157 49.0
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.6e-29 132.1 157 48.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.6e-29 132.1 157 49.0
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 3.4e-29 131.7 157 47.8
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 4.4e-29 131.3 157 47.1
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 5.7e-29 131.0 157 47.1
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 5.7e-29 131.0 157 47.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 5.7e-29 131.0 155 48.4
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 7.5e-29 130.6 157 47.1
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 7.5e-29 130.6 157 46.5
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 7.5e-29 130.6 157 47.8
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 7.5e-29 130.6 157 48.4
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 9.8e-29 130.2 157 47.8
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 9.8e-29 130.2 157 49.0
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 9.8e-29 130.2 157 47.1
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.3e-28 129.8 157 46.5
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.3e-28 129.8 157 47.8
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.3e-28 129.8 157 49.0
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 1.3e-28 129.8 157 47.1
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 1.7e-28 129.4 157 47.1
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.2e-28 129.0 156 48.7
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 2.2e-28 129.0 157 45.9
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.2e-28 129.0 160 45.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.2e-28 129.0 156 49.4
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.2e-28 129.0 158 46.8
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 2.8e-28 128.6 157 46.5
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.8e-28 128.6 156 48.1
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.8e-28 128.6 157 47.8
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.7e-28 128.3 157 46.5
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.7e-28 128.3 157 46.5
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.7e-28 128.3 157 46.5
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 6.3e-28 127.5 157 47.8
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 6.3e-28 127.5 157 47.1
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 8.3e-28 127.1 157 48.4
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 8.3e-28 127.1 157 47.8
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.1e-27 126.7 157 47.1
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.1e-27 126.7 157 47.1
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.4e-27 126.3 157 46.5
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.4e-27 126.3 157 49.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.4e-27 126.3 157 47.1
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.4e-27 126.3 157 47.1
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.4e-27 126.3 157 47.1
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.4e-27 126.3 160 46.2
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.4e-27 126.3 157 49.0
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-27 125.9 162 44.4
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.8e-27 125.9 162 44.4
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.8e-27 125.9 157 45.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.8e-27 125.9 157 47.1
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.8e-27 125.9 156 46.8
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.8e-27 125.9 105 61.9
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.4e-27 125.6 157 47.8
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 2.4e-27 125.6 157 48.4
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 3.1e-27 125.2 157 47.8
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 4.1e-27 124.8 159 47.2
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 4.1e-27 124.8 156 49.4
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 5.4e-27 124.4 156 47.4
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 5.4e-27 124.4 157 48.4
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 7.0e-27 124.0 157 47.1
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 7.0e-27 124.0 151 49.0
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 7.0e-27 124.0 158 47.5
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.1e-27 123.6 156 48.1
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.2e-26 123.2 157 46.5
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.2e-26 123.2 156 46.8
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.6e-26 122.9 157 43.9
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.6e-26 122.9 157 45.2
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.6e-26 122.9 156 48.1
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.6e-26 122.9 156 48.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.6e-26 122.9 157 48.4
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.7e-26 122.1 157 47.1
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 2.7e-26 122.1 155 48.4
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.7e-26 122.1 157 47.1
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 3.5e-26 121.7 144 49.3
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 5.9e-26 120.9 84 71.4
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 1.7e-25 119.4 157 46.5
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 6.5e-25 117.5 157 46.5
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.1e-24 116.7 158 44.9
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.5e-24 116.3 157 45.9
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.5e-24 115.5 157 45.9
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 7.2e-24 114.0 157 44.6
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.2e-24 114.0 156 44.9
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 7.2e-24 114.0 169 42.6
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.6e-23 112.8 157 43.9
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.1e-23 112.5 157 43.9
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.8e-23 112.1 169 42.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.7e-23 111.3 156 44.9
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 6.1e-23 110.9 158 41.8
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 1.0e-22 110.2 146 45.9
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.8e-22 107.5 84 66.7
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 8.9e-22 107.1 154 44.2
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.2e-21 106.7 157 42.0
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.0e-21 105.9 86 66.3
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 2.6e-21 105.5 148 42.6
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.4e-21 105.1 149 44.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.4e-21 104.8 84 65.5
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.8e-19 99.4 166 39.2
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.8e-19 99.4 167 38.3
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 7.0e-19 97.4 79 65.8
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 4.5e-18 94.7 165 37.6
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.0e-17 93.6 170 36.5
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.3e-17 93.2 137 43.8
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-17 93.2 79 65.8
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.7e-17 92.8 160 38.1
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 5.0e-17 91.3 60 73.3
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 9.5e-16 87.0 121 43.8
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-13 80.1 54 72.2
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.7e-12 75.1 54 70.4
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 1.1e-11 73.6 56 67.9
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 4.1e-11 71.6 53 69.8
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 3.5e-10 68.6 49 73.5
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 3.9e-09 65.1 104 39.4
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 4.3e-08 61.6 55 60.0
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.6e-07 58.5 109 33.9
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 4.7e-07 58.2 105 36.2
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.0e-07 57.4 54 57.4


User provided reference genes

Program Settings