Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 8.4e-120 433.7 222 100.0
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 6.5e-96 354.4 234 82.5
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 8.8e-93 344.0 230 81.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.8e-85 319.7 233 75.1
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 3.7e-83 312.0 233 73.8
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.1e-82 308.9 233 73.0
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.9e-81 304.7 232 71.6
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.7e-81 304.3 233 72.5
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.7e-81 304.3 232 71.1
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 5.0e-80 301.6 232 71.1
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 8.5e-80 300.8 232 69.4
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.1e-79 300.4 234 70.1
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 8.0e-78 294.3 234 67.1
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.4e-77 293.5 231 67.5
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.8e-77 293.1 229 69.4
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.3e-77 292.7 231 67.5
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.0e-77 292.4 229 69.0
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 4.0e-77 292.0 231 67.5
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 4.0e-77 292.0 228 68.4
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 5.2e-77 291.6 236 67.8
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 5.2e-77 291.6 231 68.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 8.8e-77 290.8 240 66.2
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.6e-76 289.3 231 65.4
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 3.3e-76 288.9 233 67.0
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 4.4e-76 288.5 231 67.1
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 5.7e-76 288.1 239 66.1
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 5.7e-76 288.1 228 66.2
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 5.7e-76 288.1 231 68.4
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 7.5e-76 287.7 233 66.5
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 9.7e-76 287.3 231 67.1
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 9.7e-76 287.3 233 67.0
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-75 287.0 229 67.2
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 1.3e-75 287.0 237 65.0
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.3e-75 287.0 237 65.0
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 1.7e-75 286.6 236 65.3
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.7e-75 286.6 237 65.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.7e-75 286.6 240 65.4
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.2e-75 286.2 236 64.8
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 2.2e-75 286.2 227 67.4
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.2e-75 286.2 241 65.1
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 2.8e-75 285.8 231 67.1
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 2.8e-75 285.8 237 65.0
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 3.7e-75 285.4 235 66.4
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 6.3e-75 284.6 236 64.8
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.3e-75 284.6 236 64.8
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 8.2e-75 284.3 233 68.2
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 1.1e-74 283.9 240 64.2
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.1e-74 283.9 228 66.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.8e-74 283.1 231 66.2
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.4e-74 282.7 230 65.2
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 3.1e-74 282.3 228 65.8
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 4.1e-74 282.0 229 66.8
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 5.3e-74 281.6 232 65.5
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 5.3e-74 281.6 232 65.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 5.3e-74 281.6 229 65.1
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 7.0e-74 281.2 228 64.5
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 7.0e-74 281.2 231 65.8
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 9.1e-74 280.8 228 64.5
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 9.1e-74 280.8 233 63.9
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 9.1e-74 280.8 228 66.2
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.2e-73 280.4 231 65.4
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.6e-73 280.0 244 62.7
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.6e-73 280.0 231 64.1
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 2.7e-73 279.3 229 66.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.7e-73 279.3 228 64.9
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 7.7e-73 277.7 232 66.4
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 7.7e-73 277.7 228 66.2
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.7e-73 277.7 228 66.2
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.0e-72 277.3 228 64.5
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 1.0e-72 277.3 228 64.0
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.0e-72 277.3 230 65.2
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 1.3e-72 276.9 228 63.6
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 1.3e-72 276.9 228 63.6
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.3e-72 276.9 228 65.8
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.7e-72 276.6 228 65.8
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.7e-72 276.6 235 64.7
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.2e-72 276.2 228 63.6
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.2e-72 276.2 228 63.6
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.2e-72 276.2 228 63.6
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 5.0e-72 275.0 228 63.2
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 6.5e-72 274.6 230 65.2
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 8.5e-72 274.2 228 63.6
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 8.5e-72 274.2 228 63.6
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 8.5e-72 274.2 263 60.8
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.5e-71 273.5 229 65.9
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.5e-71 273.5 232 65.9
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 2.5e-71 272.7 228 64.5
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 4.2e-71 271.9 229 62.9
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 5.5e-71 271.6 223 64.1
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 9.4e-71 270.8 230 62.2
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.6e-70 270.0 224 65.6
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 8.0e-70 267.7 233 60.5
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.8e-69 266.5 230 61.3
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 4.0e-69 265.4 233 60.5
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 4.0e-69 265.4 233 60.5
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 9.8e-68 260.8 205 68.8
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 9.8e-68 260.8 231 61.9
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.2e-67 259.6 231 60.2
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.8e-67 259.2 229 61.6
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 3.7e-67 258.8 231 62.8
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 4.8e-67 258.5 204 69.6
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.1e-66 255.8 236 61.4
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 1.6e-65 253.4 237 58.6
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.0e-65 253.1 219 63.0
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 4.5e-65 251.9 237 58.6
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.0e-64 250.8 219 63.5
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.2e-64 249.6 232 60.3
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 3.8e-64 248.8 230 60.9
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.8e-64 248.8 237 55.7
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 6.5e-64 248.1 222 57.7
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.5e-63 246.1 240 57.5
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.2e-62 243.8 238 55.5
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.7e-62 242.7 233 56.7
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 8.8e-61 237.7 202 65.3
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.2e-60 237.3 221 57.9
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.5e-60 236.9 202 61.9
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.0e-60 236.5 216 60.2
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 2.6e-60 236.1 199 62.8
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 4.9e-59 231.9 159 76.1
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.1e-58 230.7 199 63.8
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.0e-58 228.0 200 62.0
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 3.5e-57 225.7 250 53.2
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 2.3e-56 223.0 204 59.3
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-55 220.7 183 68.3
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.9e-55 219.9 194 62.9
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 9.5e-55 217.6 243 53.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 1.2e-54 217.2 199 58.8
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.8e-54 216.1 163 68.1
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 8.0e-54 214.5 232 53.9
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.8e-53 211.5 217 53.5
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 1.2e-52 210.7 229 52.0
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 8.6e-48 194.5 116 80.2
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.9e-47 193.4 143 69.2
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.5e-47 193.0 230 47.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.2e-46 188.3 175 60.6
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.0e-45 187.6 244 45.5
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 1.2e-44 184.1 228 47.4
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 7.8e-41 171.4 151 60.9
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 1.1e-34 151.0 126 65.1
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.4e-34 150.6 128 61.7
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.0e-32 144.4 149 53.7
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.6e-32 141.4 89 76.4
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.6e-32 141.4 89 76.4
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 2.1e-30 136.7 143 60.1
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 3.8e-27 125.9 138 54.3
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.4e-26 123.2 146 50.0
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.1e-26 122.5 146 50.0
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.7e-25 119.8 73 79.5
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.0e-24 117.9 73 78.1
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.3e-24 117.5 73 78.1
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.7e-24 117.1 73 78.1
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 6.6e-24 115.2 73 75.3
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.1e-21 106.3 132 50.0
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.7e-17 93.2 99 56.6
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.3e-16 90.9 182 33.5
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.6e-14 82.8 75 60.0
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.1e-13 81.3 66 63.6
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.4e-13 80.1 77 54.5
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 3.4e-12 76.3 68 61.8
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.7e-11 73.9 63 63.5
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.9e-11 73.2 44 77.3
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.1e-10 71.2 44 72.7
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.4e-10 70.9 57 66.7
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.5e-07 60.8 63 54.0


User provided reference genes

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