Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 1.6e-200 702.6 357 100.0
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 3.5e-192 674.9 358 96.1
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.4e-185 652.9 353 92.6
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 8.3e-178 627.1 358 88.5
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 6.0e-176 620.9 358 88.0
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 7.8e-176 620.5 358 88.0
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 3.9e-167 591.7 356 82.0
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 1.1e-166 590.1 356 83.4
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 1.5e-166 589.7 355 82.3
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.5e-163 579.7 356 81.7
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 2.6e-163 578.9 356 81.2
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 5.8e-163 577.8 347 82.4
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 3.8e-162 575.1 363 79.6
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 7.1e-161 570.9 354 79.1
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 3.5e-160 568.5 356 78.4
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 7.8e-160 567.4 350 82.0
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 1.7e-159 566.2 356 78.4
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 2.3e-159 565.8 352 81.0
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 3.9e-159 565.1 358 78.5
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 6.6e-159 564.3 357 79.3
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 6.6e-159 564.3 354 80.5
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 6.6e-159 564.3 354 78.5
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 8.7e-159 563.9 354 78.2
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 8.7e-159 563.9 354 79.1
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 1.9e-158 562.8 356 80.1
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.3e-157 560.1 356 76.7
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.6e-157 559.7 351 79.5
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 2.8e-157 558.9 349 80.2
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 3.1e-156 555.4 349 78.8
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 3.1e-156 555.4 349 78.8
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 3.1e-156 555.4 349 78.8
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 3.1e-156 555.4 356 77.0
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 4.0e-156 555.1 349 78.8
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 5.3e-156 554.7 351 79.5
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 6.9e-156 554.3 351 78.3
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 6.9e-156 554.3 352 77.3
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 6.9e-156 554.3 353 78.2
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.2e-155 553.5 352 78.4
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 1.5e-155 553.1 349 78.5
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 1.5e-155 553.1 353 78.2
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 2.0e-155 552.7 352 77.0
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 2.0e-155 552.7 349 78.5
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 9.9e-155 550.4 356 75.8
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.7e-154 549.7 356 75.0
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 1.7e-154 549.7 355 75.5
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 2.2e-154 549.3 349 78.2
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 8.4e-154 547.4 358 77.9
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 8.4e-154 547.4 355 75.5
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.1e-153 547.0 352 77.6
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 1.9e-153 546.2 356 76.1
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.2e-153 545.4 352 77.3
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.2e-153 545.4 352 77.3
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 3.2e-153 545.4 356 76.7
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 4.2e-153 545.0 352 78.7
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 4.2e-153 545.0 352 78.4
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 5.4e-153 544.7 378 73.3
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.6e-152 543.1 352 77.3
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 4.6e-152 541.6 350 76.9
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 6.0e-152 541.2 339 78.8
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 1.0e-151 540.4 354 76.8
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 1.7e-151 539.7 354 78.2
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 2.3e-151 539.3 354 75.7
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.9e-150 536.2 353 75.6
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 3.3e-150 535.4 350 76.6
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 4.3e-150 535.0 351 75.5
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 7.4e-150 534.3 347 77.2
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.3e-149 533.5 354 76.3
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 3.6e-149 531.9 356 75.3
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.8e-149 531.6 350 75.4
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.0e-148 528.5 354 75.7
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 5.3e-148 528.1 356 74.2
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.2e-147 526.9 356 74.7
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 2.2e-146 522.7 354 72.0
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 4.2e-145 518.5 371 71.2
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 4.2e-145 518.5 300 83.7
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 1.2e-144 516.9 353 72.5
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 1.6e-144 516.5 345 75.9
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 2.1e-144 516.2 370 70.0
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 3.5e-144 515.4 346 73.4
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 6.0e-144 514.6 307 87.0
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.8e-143 513.1 307 86.3
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 3.3e-142 508.8 302 85.8
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 1.6e-141 506.5 351 73.2
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 8.1e-141 504.2 355 71.5
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 1.1e-140 503.8 340 73.2
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.4e-140 503.4 351 74.1
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 2.4e-140 502.7 349 73.1
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 1.5e-139 500.0 302 83.4
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.9e-138 495.7 375 68.3
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 6.5e-138 494.6 347 69.7
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 2.5e-137 492.7 301 83.4
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 7.1e-137 491.1 356 69.9
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 3.9e-135 485.3 301 81.7
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.6e-133 479.9 316 75.6
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 1.4e-132 476.9 383 65.0
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 6.5e-130 468.0 328 73.2
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 1.4e-129 466.8 341 68.3
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 1.6e-128 463.4 372 67.5
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 2.1e-128 463.0 302 74.5
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 3.6e-128 462.2 301 73.8
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 3.6e-128 462.2 393 62.6
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 3.6e-128 462.2 325 74.8
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.0e-127 460.7 330 73.0
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 1.5e-126 456.8 317 72.6
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 2.5e-126 456.1 350 69.1
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 4.8e-125 451.8 302 75.5
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.8e-124 449.9 299 75.3
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 2.2e-122 443.0 283 75.6
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.9e-121 439.9 265 86.8
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 7.2e-121 438.0 356 64.9
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 2.7e-120 436.0 301 73.8
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 1.8e-119 433.3 254 82.7
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 7.4e-118 427.9 254 81.1
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 2.6e-115 419.5 298 69.8
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 1.2e-112 410.6 387 59.7
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.0e-111 407.5 296 68.6
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 6.7e-111 404.8 251 82.9
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 3.8e-106 389.0 257 76.3
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.1e-105 387.5 254 77.6
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 4.2e-105 385.6 257 78.2
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.2e-104 384.0 342 55.3
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.0e-103 380.9 347 55.0
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 1.2e-102 377.5 234 78.2
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 2.7e-99 366.3 343 54.8
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 2.2e-98 363.2 349 53.3
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 3.8e-98 362.5 236 80.1
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 5.5e-97 358.6 309 63.1
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 6.5e-90 335.1 226 73.5
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 6.1e-88 328.6 268 58.6
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 4.4e-86 322.4 190 83.7
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.8e-85 319.7 257 65.4
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.0e-83 313.5 233 70.8
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 1.3e-77 294.3 323 46.7
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 2.2e-77 293.5 195 73.3
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 8.1e-64 248.4 191 67.0
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.7e-61 240.7 163 73.6
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 5.4e-60 235.7 363 43.5
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.7e-50 204.1 180 61.1
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 7.4e-33 145.6 98 72.4
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 5.5e-28 129.4 73 82.2
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 1.6e-27 127.9 74 81.1
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 2.1e-27 127.5 73 79.5
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 2.1e-27 127.5 73 79.5
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 3.5e-27 126.7 73 80.8
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 1.6e-24 117.9 125 55.2
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 2.8e-24 117.1 63 84.1
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 6.5e-21 105.9 95 58.9
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 5.7e-09 66.2 55 60.0
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 1.1e-07 62.0 40 75.0


User provided reference genes

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