Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1090800 Malus domestica HOM05D005220 ORTHO05D006082 1.2e-113 413.3 221 100.0
MD00G1013500 Malus domestica HOM05D005220 ORTHO05D006082 6.9e-106 387.5 221 92.8
Prupe.6G075200 Prunus persica HOM05D005220 ORTHO05D006082 1.9e-71 273.1 232 69.4
RcHm_v2.0_Chr5g0065291 Rosa chinensis HOM05D005220 ORTHO05D006082 7.5e-52 208.0 204 55.4
FAN25G3767 Fragaria x ananassa HOM05D005220 ORTHO05D006082 5.9e-49 198.4 206 53.4
FAN21G2192 Fragaria x ananassa HOM05D005220 ORTHO05D006082 1.0e-48 197.6 203 53.2
FAN11G0817 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.2e-48 196.4 214 50.5
FAN16G3714 Fragaria x ananassa HOM05D005220 ORTHO05D006082 4.2e-47 192.2 204 53.9
FvH4_3g36400 Fragaria vesca HOM05D005220 ORTHO05D006082 4.7e-30 135.6 192 42.7
Cfa007639 Carpinus fangiana HOM05D005220 ORTHO05D006082 8.3e-27 124.8 183 43.2
Dinv33817 Davidia involucrata HOM05D005220 ORTHO05D006082 1.1e-26 124.4 188 40.4
Haze_14458 Corylus avellana HOM05D005220 ORTHO05D006082 2.0e-25 120.2 189 40.7
CiPaw.04G057500 Carya illinoinensis HOM05D005220 ORTHO05D006082 1.0e-24 117.9 189 41.8
Hma1.2p1_0481F.1_g161950 Hydrangea macrophylla HOM05D005220 ORTHO05D006082 3.0e-24 116.3 186 39.2
Rhsim08G0074200 Rhododendron simsii HOM05D005220 ORTHO05D006082 9.5e-23 111.3 172 41.3
vmacro18154 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.6e-22 110.5 162 42.0
Glyma.18G265000 Glycine max HOM05D005220 ORTHO05D006082 2.1e-22 110.2 179 38.0
Oeu010241.1 Olea europaea HOM05D005220 ORTHO05D006082 2.1e-22 110.2 192 38.5
Lj1g0008070 Lotus japonicus HOM05D005220 ORTHO05D006082 2.8e-22 109.8 189 38.6
TAR629G0541 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.6e-22 109.4 180 41.1
Lju41C5T5 Lonicera japonica HOM05D005220 ORTHO05D006082 6.2e-22 108.6 205 35.1
GSVIVG01011505001 Vitis vinifera HOM05D005220 ORTHO05D006082 6.2e-22 108.6 190 36.3
Glyma.08G242800 Glycine max HOM05D005220 ORTHO05D006082 1.1e-21 107.8 181 37.6
MBI16_g09907_MAGBIO Magnolia biondii HOM05D005220 ORTHO05D006082 1.1e-21 107.8 140 44.3
Potri.017G091700 Populus trichocarpa HOM05D005220 ORTHO05D006082 1.4e-21 107.5 171 36.8
Sabra17G0080700 Salix brachista HOM05D005220 ORTHO05D006082 2.3e-21 106.7 171 36.3
Dinv34960 Davidia involucrata HOM05D005220 ORTHO05D006082 5.2e-21 105.5 199 36.2
Sc10g0003210 Simmondsia chinensis HOM05D005220 ORTHO05D006082 6.8e-21 105.1 184 39.7
Oeu062150.1 Olea europaea HOM05D005220 ORTHO05D006082 2.6e-20 103.2 160 40.6
TAR622G0939 Trochodendron aralioides HOM05D005220 ORTHO05D006082 4.4e-20 102.4 171 38.6
Cc07_g04000 Coffea canephora HOM05D005220 ORTHO05D006082 5.8e-20 102.1 199 33.2
Phvul.008G035000 Phaseolus vulgaris HOM05D005220 ORTHO05D006082 5.8e-20 102.1 180 35.6
TWI34G1812 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 5.8e-20 102.1 167 35.3
Hund02603 Selenicereus undatus HOM05D005220 ORTHO05D006082 1.3e-19 100.9 148 41.2
CSS0002601 Camellia sinensis var. sinensis HOM05D005220 ORTHO05D006082 1.7e-19 100.5 194 34.0
Nn3g17397 Nelumbo nucifera HOM05D005220 ORTHO05D006082 2.2e-19 100.1 190 34.7
Hund13159 Selenicereus undatus HOM05D005220 ORTHO05D006082 8.3e-19 98.2 186 35.5
VMungo1383G2795 Vigna mungo HOM05D005220 ORTHO05D006082 1.1e-18 97.8 180 35.6
vmacro05657 Vaccinium macrocarpon HOM05D005220 ORTHO05D006082 1.4e-18 97.4 132 40.9
Actinidia07816 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.4e-18 96.7 178 34.8
Rhsim10G0044300 Rhododendron simsii HOM05D005220 ORTHO05D006082 2.4e-18 96.7 177 35.0
Manes.01G098100 Manihot esculenta HOM05D005220 ORTHO05D006082 3.2e-18 96.3 179 33.5
TAR371G0084 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.2e-18 96.3 196 36.2
TWI60G0661 Tripterygium wilfordii HOM05D005220 ORTHO05D006082 5.4e-18 95.5 180 36.1
Lalb_Chr17g0337031 Lupinus albus HOM05D005220 ORTHO05D006082 1.2e-17 94.4 179 34.6
TAR374G0076 Trochodendron aralioides HOM05D005220 ORTHO05D006082 3.5e-17 92.8 196 35.2
TAR636G1204 Trochodendron aralioides HOM05D005220 ORTHO05D006082 1.7e-16 90.5 117 44.4
Actinidia01983 Actinidia chinensis HOM05D005220 ORTHO05D006082 2.3e-16 90.1 131 38.9
DCAR_011050 Daucus carota HOM05D005220 ORTHO05D006082 2.3e-16 90.1 186 36.0
Prupe.5G201200 Prunus persica HOM05D005220 ORTHO05D006082 8.6e-16 88.2 112 41.1
Sc04g0003090 Simmondsia chinensis HOM05D005220 ORTHO05D006082 8.6e-16 88.2 161 35.4
Lsat_1_v5_gn_2_87740 Lactuca sativa HOM05D005220 ORTHO05D006082 1.1e-15 87.8 132 40.2
HanXRQChr14g0448751 Helianthus annuus HOM05D005220 ORTHO05D006082 2.5e-15 86.7 180 34.4
Ca_13809_v3 Cicer arietinum L. HOM05D005220 ORTHO05D006082 3.3e-15 86.3 126 39.7
Lj1g0011465 Lotus japonicus HOM05D005220 ORTHO05D006082 4.3e-15 85.9 193 32.6
MSTRG.3015 Avicennia marina HOM05D005220 ORTHO05D006082 7.3e-15 85.1 142 38.0
CDE10G0382 Ceratophyllum demersum HOM05D005220 ORTHO05D006082 1.2e-14 84.3 138 36.2
AUR62008499 Chenopodium quinoa HOM05D005220 ORTHO05D006082 2.8e-14 83.2 117 41.9
AUR62021593 Chenopodium quinoa HOM05D005220 ORTHO05D006082 2.8e-14 83.2 127 41.7
Lj1g0005307 Lotus japonicus HOM05D005220 ORTHO05D006082 2.8e-14 83.2 112 42.9
HanXRQChr05g0157201 Helianthus annuus HOM05D005220 ORTHO05D006082 4.7e-14 82.4 133 39.8
arahy.Tifrunner.gnm1.ann1.8S7SHD Arachis hypogaea HOM05D005220 ORTHO05D006082 8.1e-14 81.6 169 34.3
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.4e-13 80.9 121 41.3
Aqoxy3G03583 Aquilegia oxysepala HOM05D005220 ORTHO05D006082 1.8e-13 80.5 99 42.4
FvH4_5g14276 Fragaria vesca HOM05D005220 ORTHO05D006082 1.8e-13 80.5 127 40.2
arahy.Tifrunner.gnm1.ann1.XVT01H Arachis hypogaea HOM05D005220 ORTHO05D006082 2.3e-13 80.1 175 36.0
FAN08G2293 Fragaria x ananassa HOM05D005220 ORTHO05D006082 2.3e-13 80.1 112 42.0
Lsat_1_v5_gn_5_21960 Lactuca sativa HOM05D005220 ORTHO05D006082 4.0e-13 79.3 103 40.8
Nitab4.5_0000212g0170 Nicotiana tabacum HOM05D005220 ORTHO05D006082 4.0e-13 79.3 127 36.2
Nitab4.5_0007954g0010 Nicotiana tabacum HOM05D005220 ORTHO05D006082 4.0e-13 79.3 127 37.0
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 5.2e-13 79.0 121 40.5
Ciclev10020317m.g Citrus clementina HOM05D005220 ORTHO05D006082 6.8e-13 78.6 106 38.7
QL10p018718 Quercus lobata HOM05D005220 ORTHO05D006082 8.9e-13 78.2 123 36.6
RcHm_v2.0_Chr7g0182621 Rosa chinensis HOM05D005220 ORTHO05D006082 1.2e-12 77.8 130 39.2
EL10Ac5g11101 Beta vulgaris HOM05D005220 ORTHO05D006082 1.5e-12 77.4 185 29.2
Lsat_1_v5_gn_5_21940 Lactuca sativa HOM05D005220 ORTHO05D006082 1.5e-12 77.4 136 37.5
Psat7g133400 Pisum sativum HOM05D005220 ORTHO05D006082 2.0e-12 77.0 114 40.4
Thecc.03G097300 Theobroma cacao HOM05D005220 ORTHO05D006082 2.0e-12 77.0 143 37.8
COL.COLO4_22223 Corchorus olitorius HOM05D005220 ORTHO05D006082 2.6e-12 76.6 136 39.7
ECA238G3864 Erigeron canadensis HOM05D005220 ORTHO05D006082 3.4e-12 76.3 182 30.2
Medtr3g023750 Medicago truncatula HOM05D005220 ORTHO05D006082 4.4e-12 75.9 119 37.8
Gohir.D12G183566 Gossypium hirsutum HOM05D005220 ORTHO05D006082 5.8e-12 75.5 128 35.9
Gorai.008G196900 Gossypium raimondii HOM05D005220 ORTHO05D006082 5.8e-12 75.5 128 35.9
ATR0064G106 Amborella trichopoda HOM05D005220 ORTHO05D006082 7.6e-12 75.1 150 34.0
AL5G19390 Arabidopsis lyrata HOM05D005220 ORTHO05D006082 7.6e-12 75.1 124 36.3
Haze_07684 Corylus avellana HOM05D005220 ORTHO05D006082 7.6e-12 75.1 129 34.9
CAN.G979.12 Capsicum annuum HOM05D005220 ORTHO05D006082 9.9e-12 74.7 173 30.1
Peaxi162Scf00629g00420 Petunia axillaris HOM05D005220 ORTHO05D006082 9.9e-12 74.7 174 31.0
HPP92_009883 Vanilla planifolia HOM05D005220 ORTHO05D006082 9.9e-12 74.7 111 38.7
PSO017G3052 Papaver somniferum HOM05D005220 ORTHO05D006082 1.3e-11 74.3 154 31.8
MSTRG.23894 Avicennia marina HOM05D005220 ORTHO05D006082 2.2e-11 73.6 193 29.0
MD14G1208900 Malus domestica HOM05D005220 ORTHO05D006082 4.9e-11 72.4 148 29.7
Thhalv10005570m.g Eutrema salsugineum HOM05D005220 ORTHO05D006082 6.4e-11 72.0 128 35.2
PSO478G1432 Papaver somniferum HOM05D005220 ORTHO05D006082 6.4e-11 72.0 204 28.4
Duzib205G0201 Durio zibethinus HOM05D005220 ORTHO05D006082 8.4e-11 71.6 131 33.6
Gohir.D07G074000 Gossypium hirsutum HOM05D005220 ORTHO05D006082 8.4e-11 71.6 133 36.8
Gorai.001G078200 Gossypium raimondii HOM05D005220 ORTHO05D006082 8.4e-11 71.6 133 36.8
SalBow1G1470 Salvia bowleyana HOM05D005220 ORTHO05D006082 8.4e-11 71.6 177 31.1
Hund02604 Selenicereus undatus HOM05D005220 ORTHO05D006082 8.4e-11 71.6 154 31.8
Sed0003803 Sechium edule HOM05D005220 ORTHO05D006082 2.4e-10 70.1 160 28.8
arahy.Tifrunner.gnm1.ann1.UWUI2N Arachis hypogaea HOM05D005220 ORTHO05D006082 4.1e-10 69.3 109 33.0
arahy.Tifrunner.gnm1.ann1.Y71GGS Arachis hypogaea HOM05D005220 ORTHO05D006082 5.4e-10 68.9 109 32.1
Os10g0324600 Oryza sativa ssp. japonica HOM05D005220 ORTHO05D006082 5.4e-10 68.9 130 34.6
GSVIVG01007924001 Vitis vinifera HOM05D005220 ORTHO05D006082 5.4e-10 68.9 129 34.9
CiPaw.11G050100 Carya illinoinensis HOM05D005220 ORTHO05D006082 7.1e-10 68.6 127 32.3
PSO302G0007 Papaver somniferum HOM05D005220 ORTHO05D006082 7.1e-10 68.6 207 27.5
Sopen02g016260 Solanum pennellii HOM05D005220 ORTHO05D006082 7.1e-10 68.6 134 35.8
PGSC0003DMG400025138 Solanum tuberosum HOM05D005220 ORTHO05D006082 7.1e-10 68.6 171 29.8
Eucgr.I01975 Eucalyptus grandis HOM05D005220 ORTHO05D006082 9.2e-10 68.2 71 47.9
Solyc02g067070.4 Solanum lycopersicum HOM05D005220 ORTHO05D006082 9.2e-10 68.2 134 35.1
SGA_v2.0_scaffold52G19178 Striga asiatica HOM05D005220 ORTHO05D006082 9.2e-10 68.2 151 29.8
ClCG06G015820 Citrullus lanatus HOM05D005220 ORTHO05D006082 1.6e-09 67.4 166 30.1
ATR0681G067 Amborella trichopoda HOM05D005220 ORTHO05D006082 2.1e-09 67.0 125 35.2
Medtr5g097950 Medicago truncatula HOM05D005220 ORTHO05D006082 2.1e-09 67.0 115 32.2
Ah.11g047990 Amaranthus hybridus HOM05D005220 ORTHO05D006082 2.7e-09 66.6 151 32.5
Lalb_Chr23g0273001 Lupinus albus HOM05D005220 ORTHO05D006082 4.6e-09 65.9 115 31.3
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 6.0e-09 65.5 113 34.5
HPP92_020440 Vanilla planifolia HOM05D005220 ORTHO05D006082 6.0e-09 65.5 121 33.9
CsaV3_1G002740 Cucumis sativus L. HOM05D005220 ORTHO05D006082 7.8e-09 65.1 170 27.1
ECA246G3789 Erigeron canadensis HOM05D005220 ORTHO05D006082 1.0e-08 64.7 126 32.5
Sed0005854 Sechium edule HOM05D005220 ORTHO05D006082 1.0e-08 64.7 122 31.1
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 2.3e-08 63.5 98 38.8
Cpa.g.sc94.10 Carica papaya HOM05D005220 ORTHO05D006082 2.3e-08 63.5 123 33.3
Cfa019301 Carpinus fangiana HOM05D005220 ORTHO05D006082 2.3e-08 63.5 116 31.0
HanXRQChr14g0426851 Helianthus annuus HOM05D005220 ORTHO05D006082 1.1e-07 61.2 134 32.8
Migut.H00644 Erythranthe guttata HOM05D005220 ORTHO05D006082 1.5e-07 60.8 67 47.8
Dinv38787 Davidia involucrata HOM05D005220 ORTHO05D006082 2.5e-07 60.1 84 42.9
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 3.3e-07 59.7 96 36.5
MELO3C017209.2 Cucumis melo HOM05D005220 ORTHO05D006082 3.3e-07 59.7 166 27.1
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 5.6e-07 58.9 94 34.0
TPR.G12226 Trifolium pratense HOM05D005220 ORTHO05D006082 9.6e-07 58.2 167 27.5
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.6e-06 57.4 159 30.2
Aa31LG2G3950 Aethionema arabicum HOM05D005220 ORTHO05D006082 3.6e-06 56.2 80 40.0
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 4.7e-06 55.8 92 35.9
Gohir.A12G180900 Gossypium hirsutum HOM05D005220 ORTHO05D006082 6.2e-06 55.5 116 29.3
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 8.1e-06 55.1 99 38.4
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 8.1e-06 55.1 113 30.1
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 8.1e-06 55.1 115 30.4
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 8.1e-06 55.1 98 31.6


User provided reference genes

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