Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 0.0e+00 1086.6 831 100.0
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 3.1e-260 902.1 852 82.9
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.5e-206 723.8 886 70.1
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 8.8e-154 548.5 884 63.6
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 8.2e-152 542.0 891 63.0
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.5e-148 530.4 881 63.7
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.3e-145 520.0 881 64.5
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 4.1e-143 513.1 881 62.8
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.2e-136 490.7 885 61.5
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 7.8e-110 402.5 928 53.0
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 6.6e-109 399.4 944 53.0
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 3.3e-108 397.1 950 56.0
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 5.8e-105 386.3 915 54.5
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 4.0e-98 363.6 900 55.7
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 6.8e-98 362.8 908 54.0
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 2.0e-97 361.3 901 51.9
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 3.2e-95 354.0 897 52.1
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 8.6e-93 345.9 884 53.2
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 1.2e-91 342.0 895 52.8
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 1.2e-91 342.0 895 52.8
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 1.4e-90 338.6 894 52.5
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 1.9e-87 328.2 900 52.0
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 2.1e-86 324.7 913 52.0
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 2.7e-86 324.3 961 52.4
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 6.0e-86 323.2 883 49.0
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 2.3e-85 321.2 930 49.4
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 3.0e-85 320.9 854 54.0
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 3.0e-85 320.9 826 50.1
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 1.1e-84 318.9 887 51.0
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 9.6e-84 315.8 934 49.7
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 4.7e-83 313.5 942 48.8
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 4.0e-82 310.5 930 51.2
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 8.4e-80 302.8 942 46.0
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 7.1e-79 299.7 944 45.9
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 1.5e-76 292.0 903 46.7
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 1.9e-76 291.6 900 48.8
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 3.3e-76 290.8 888 50.1
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 3.1e-74 284.3 908 50.3
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 9.0e-74 282.7 280 62.1
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 1.5e-73 282.0 306 58.5
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 3.2e-71 274.2 976 45.9
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 1.6e-70 271.9 244 65.2
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 1.0e-69 269.2 939 49.2
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 1.0e-69 269.2 274 60.6
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.8e-69 268.5 889 50.1
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.8e-69 268.5 922 44.0
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 2.3e-69 268.1 301 58.1
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 3.0e-69 267.7 247 65.6
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 6.7e-69 266.5 240 65.4
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 1.5e-68 265.4 921 49.0
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.5e-68 265.4 961 47.2
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 1.5e-68 265.4 905 52.2
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 3.3e-68 264.2 947 41.2
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 5.6e-68 263.5 231 67.1
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 1.3e-67 262.3 273 62.3
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 2.8e-67 261.2 286 58.4
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 4.8e-67 260.4 927 48.4
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 8.1e-67 259.6 888 43.8
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 8.1e-67 259.6 936 45.5
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 8.1e-67 259.6 941 50.1
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 2.4e-66 258.1 299 57.5
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 4.0e-66 257.3 889 48.9
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 1.2e-65 255.8 937 44.5
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 2.0e-65 255.0 273 59.3
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 2.6e-65 254.6 231 64.5
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 2.6e-65 254.6 906 47.0
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 2.6e-65 254.6 834 51.2
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 3.4e-65 254.2 934 46.5
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 7.6e-65 253.1 939 38.0
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 1.7e-64 251.9 299 55.9
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 4.9e-64 250.4 294 57.5
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 2.4e-63 248.1 291 56.0
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 4.2e-63 247.3 302 55.6
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 5.5e-63 246.9 830 45.9
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.2e-62 245.7 931 48.1
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 2.1e-62 245.0 315 54.9
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.8e-61 241.9 213 64.8
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 2.3e-61 241.5 951 47.0
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 1.5e-60 238.8 292 57.5
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 3.3e-60 237.7 865 50.1
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 4.3e-60 237.3 156 79.5
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 5.6e-60 236.9 216 64.4
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 9.6e-60 236.1 285 56.8
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 1.6e-59 235.3 903 36.4
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 2.1e-59 235.0 247 58.7
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 2.1e-59 235.0 869 43.2
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 3.7e-59 234.2 927 47.1
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 3.4e-57 227.6 142 82.4
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.3e-56 225.7 299 50.8
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 1.7e-56 225.3 944 46.1
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 1.7e-56 225.3 288 56.9
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 1.7e-56 225.3 879 44.6
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 3.8e-56 224.2 903 49.5
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 3.8e-56 224.2 226 56.6
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 3.8e-56 224.2 134 85.1
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 4.9e-56 223.8 292 53.4
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 8.4e-56 223.0 924 47.0
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.4e-55 222.2 253 55.7
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 1.4e-55 222.2 253 55.7
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 4.6e-54 217.2 314 53.2
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 4.6e-54 217.2 298 50.3
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 6.0e-54 216.9 917 48.2
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 3.0e-53 214.5 287 53.3
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 3.9e-53 214.2 243 56.8
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 7.4e-52 209.9 273 53.5
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 2.2e-51 208.4 221 57.0
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 2.4e-50 204.9 131 77.9
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 2.2e-48 198.4 906 51.1
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 4.2e-47 194.1 134 75.4
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 1.2e-46 192.6 249 55.4
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 2.7e-46 191.4 158 64.6
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 1.3e-43 182.6 925 39.7
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 3.4e-41 174.5 208 51.4
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 4.5e-41 174.1 924 45.6
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 5.9e-41 173.7 268 47.4
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 6.5e-40 170.2 158 61.4
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 1.1e-34 152.9 121 69.4
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 4.5e-33 147.5 134 62.7
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 7.2e-31 140.2 822 45.1
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 3.0e-29 134.8 172 49.4
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 6.7e-29 133.7 153 52.3
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 5.2e-21 107.5 366 42.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 7.5e-20 103.6 137 46.0
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.7e-19 102.4 219 40.6
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.1e-18 99.8 83 67.5
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 7.2e-15 87.0 129 45.7
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 1.0e-13 83.2 56 73.2
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 3.7e-11 74.7 378 41.0
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.2e-09 69.7 50 70.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 8.0e-06 57.0 180 31.1


User provided reference genes

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