Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1084600 Malus domestica HOM05D005875 ORTHO05D007213 1.8e-50 202.2 99 100.0
Prupe.6G067900 Prunus persica HOM05D005875 ORTHO05D007213 2.9e-48 194.9 99 96.0
MD11G1092100 Malus domestica HOM05D005875 ORTHO05D007213 3.8e-48 194.5 99 96.0
RcHm_v2.0_Chr5g0066881 Rosa chinensis HOM05D005875 ORTHO05D007213 1.5e-47 192.6 99 93.9
Potri.009G037800 Populus trichocarpa HOM05D005875 ORTHO05D007213 4.2e-47 191.0 99 91.9
CANSAT54G1476 Cannabis sativa HOM05D005875 ORTHO05D007213 1.6e-46 189.1 99 90.9
Dinv34304 Davidia involucrata HOM05D005875 ORTHO05D007213 2.1e-46 188.7 99 92.9
FvH4_3g37160 Fragaria vesca HOM05D005875 ORTHO05D007213 2.7e-46 188.3 99 92.9
FAN11G0304 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.7e-46 188.3 99 92.9
FAN16G0494 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.7e-46 188.3 99 92.9
FAN21G1946 Fragaria x ananassa HOM05D005875 ORTHO05D007213 2.7e-46 188.3 99 92.9
ClCG03G001200 Citrullus lanatus HOM05D005875 ORTHO05D007213 8.0e-46 186.8 99 89.9
FAN25G1682 Fragaria x ananassa HOM05D005875 ORTHO05D007213 1.0e-45 186.4 99 91.9
CiPaw.13G087500 Carya illinoinensis HOM05D005875 ORTHO05D007213 1.4e-45 186.0 99 90.9
Dinv43007 Davidia involucrata HOM05D005875 ORTHO05D007213 2.3e-45 185.3 99 91.9
Dinv43090 Davidia involucrata HOM05D005875 ORTHO05D007213 2.3e-45 185.3 99 91.9
Migut.F01279 Erythranthe guttata HOM05D005875 ORTHO05D007213 2.3e-45 185.3 99 91.9
QL01p028144 Quercus lobata HOM05D005875 ORTHO05D007213 3.0e-45 184.9 98 90.8
Sed0009265 Sechium edule HOM05D005875 ORTHO05D007213 4.0e-45 184.5 99 88.9
CAN.G394.82 Capsicum annuum HOM05D005875 ORTHO05D007213 5.2e-45 184.1 99 89.9
Nitab4.5_0000839g0140 Nicotiana tabacum HOM05D005875 ORTHO05D007213 5.2e-45 184.1 99 89.9
Nitab4.5_0008156g0010 Nicotiana tabacum HOM05D005875 ORTHO05D007213 5.2e-45 184.1 99 89.9
Peaxi162Scf00481g00628 Petunia axillaris HOM05D005875 ORTHO05D007213 5.2e-45 184.1 99 89.9
Lalb_Chr19g0138001 Lupinus albus HOM05D005875 ORTHO05D007213 6.8e-45 183.7 99 88.9
Glyma.13G339300 Glycine max HOM05D005875 ORTHO05D007213 1.5e-44 182.6 99 87.9
Phvul.L008443 Phaseolus vulgaris HOM05D005875 ORTHO05D007213 1.5e-44 182.6 99 87.9
Atru.chr3.4025 Acer truncatum HOM05D005875 ORTHO05D007213 2.0e-44 182.2 99 88.9
arahy.Tifrunner.gnm1.ann1.0PDV4E Arachis hypogaea HOM05D005875 ORTHO05D007213 3.4e-44 181.4 99 86.9
CSS0002992 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 3.4e-44 181.4 99 88.9
Manes.01G167608 Manihot esculenta HOM05D005875 ORTHO05D007213 4.4e-44 181.0 99 87.9
SalBow2G0925 Salvia bowleyana HOM05D005875 ORTHO05D007213 4.4e-44 181.0 99 89.9
Actinidia08549 Actinidia chinensis HOM05D005875 ORTHO05D007213 5.7e-44 180.6 99 87.9
Ah.08g220240 Amaranthus hybridus HOM05D005875 ORTHO05D007213 5.7e-44 180.6 99 86.9
Ciclev10029658m.g Citrus clementina HOM05D005875 ORTHO05D007213 5.7e-44 180.6 99 87.9
Manes.02G126800 Manihot esculenta HOM05D005875 ORTHO05D007213 5.7e-44 180.6 99 86.9
Sed0004662 Sechium edule HOM05D005875 ORTHO05D007213 7.5e-44 180.3 99 86.9
ECA248G0827 Erigeron canadensis HOM05D005875 ORTHO05D007213 9.8e-44 179.9 99 88.9
Sopen06g032870 Solanum pennellii HOM05D005875 ORTHO05D007213 9.8e-44 179.9 99 86.9
PGSC0003DMG400030334 Solanum tuberosum HOM05D005875 ORTHO05D007213 9.8e-44 179.9 99 86.9
Oeu017416.1 Olea europaea HOM05D005875 ORTHO05D007213 1.3e-43 179.5 97 90.7
Sc21g0006090 Simmondsia chinensis HOM05D005875 ORTHO05D007213 1.3e-43 179.5 99 87.9
TWI79G0668 Tripterygium wilfordii HOM05D005875 ORTHO05D007213 1.3e-43 179.5 99 86.9
unitig_60.g25692 Utricularia gibba HOM05D005875 ORTHO05D007213 1.3e-43 179.5 99 87.9
vmacro03020 Vaccinium macrocarpon HOM05D005875 ORTHO05D007213 1.3e-43 179.5 99 87.9
EL10Ac7g16086 Beta vulgaris HOM05D005875 ORTHO05D007213 1.7e-43 179.1 99 86.9
HPP92_019857 Vanilla planifolia HOM05D005875 ORTHO05D007213 2.2e-43 178.7 99 86.9
Psat7g211880 Pisum sativum HOM05D005875 ORTHO05D007213 2.8e-43 178.3 99 84.8
Ca_29565_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 3.7e-43 177.9 99 84.8
Nn2g11283 Nelumbo nucifera HOM05D005875 ORTHO05D007213 3.7e-43 177.9 99 87.9
TPR.G23613 Trifolium pratense HOM05D005875 ORTHO05D007213 4.8e-43 177.6 99 83.8
Lj3g0010434 Lotus japonicus HOM05D005875 ORTHO05D007213 6.3e-43 177.2 99 84.8
Aqoxy1G00802 Aquilegia oxysepala HOM05D005875 ORTHO05D007213 8.3e-43 176.8 99 87.9
Glyma.15G035100 Glycine max HOM05D005875 ORTHO05D007213 8.3e-43 176.8 99 84.8
Thecc.09G312900 Theobroma cacao HOM05D005875 ORTHO05D007213 8.3e-43 176.8 99 86.9
Medtr4g064903 Medicago truncatula HOM05D005875 ORTHO05D007213 1.1e-42 176.4 99 83.8
Rhsim13G0076300 Rhododendron simsii HOM05D005875 ORTHO05D007213 1.4e-42 176.0 99 86.9
CDE09G0926 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 1.8e-42 175.6 99 84.8
Duzib170G0534 Durio zibethinus HOM05D005875 ORTHO05D007213 1.8e-42 175.6 99 85.9
PGR031G3365 Punica granatum HOM05D005875 ORTHO05D007213 4.1e-42 174.5 99 85.9
Gohir.A13G225700 Gossypium hirsutum HOM05D005875 ORTHO05D007213 7.0e-42 173.7 99 84.8
Gohir.D13G231100 Gossypium hirsutum HOM05D005875 ORTHO05D007213 7.0e-42 173.7 99 84.8
Gorai.013G261600 Gossypium raimondii HOM05D005875 ORTHO05D007213 7.0e-42 173.7 99 84.8
Duzib168G0895 Durio zibethinus HOM05D005875 ORTHO05D007213 9.1e-42 173.3 99 84.8
Duzib168G1854 Durio zibethinus HOM05D005875 ORTHO05D007213 9.1e-42 173.3 99 84.8
arahy.Tifrunner.gnm1.ann1.L8JNUU Arachis hypogaea HOM05D005875 ORTHO05D007213 2.0e-41 172.2 112 76.8
Duzib150G0367 Durio zibethinus HOM05D005875 ORTHO05D007213 3.5e-41 171.4 99 83.8
Hma1.2p1_0543F.1_g175400 Hydrangea macrophylla HOM05D005875 ORTHO05D007213 3.5e-41 171.4 106 82.1
CDE02G2526 Ceratophyllum demersum HOM05D005875 ORTHO05D007213 4.5e-41 171.0 99 82.8
Cc01_g13510 Coffea canephora HOM05D005875 ORTHO05D007213 5.9e-41 170.6 99 83.8
THA.LOC109115974 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 1.3e-40 169.5 99 81.8
PSO017G5786 Papaver somniferum HOM05D005875 ORTHO05D007213 3.8e-40 167.9 99 80.8
PSO478G4319 Papaver somniferum HOM05D005875 ORTHO05D007213 3.8e-40 167.9 99 80.8
Aa31LG1G12030 Aethionema arabicum HOM05D005875 ORTHO05D007213 4.2e-39 164.5 99 78.8
Mapoly0001s0456 Marchantia polymorpha HOM05D005875 ORTHO05D007213 9.5e-39 163.3 99 78.8
THA.LOC104799420 Tarenaya hassleriana HOM05D005875 ORTHO05D007213 9.5e-39 163.3 99 78.8
ATR0210G023 Amborella trichopoda HOM05D005875 ORTHO05D007213 4.7e-38 161.0 99 77.8
CSS0010627 Camellia sinensis var. sinensis HOM05D005875 ORTHO05D007213 6.1e-38 160.6 88 87.5
TAR369G0127 Trochodendron aralioides HOM05D005875 ORTHO05D007213 1.0e-37 159.8 99 78.8
Gorai.003G127900 Gossypium raimondii HOM05D005875 ORTHO05D007213 1.4e-37 159.5 99 77.8
A10p16360 Brassica napus HOM05D005875 ORTHO05D007213 1.8e-37 159.1 95 80.0
BraA10t43722Z Brassica rapa HOM05D005875 ORTHO05D007213 1.8e-37 159.1 95 80.0
Sp6g20850 Schrenkiella parvula HOM05D005875 ORTHO05D007213 1.8e-37 159.1 95 80.0
SEGI_34558 Sequoiadendron giganteum HOM05D005875 ORTHO05D007213 1.8e-37 159.1 99 75.8
AL8G35550 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 2.3e-37 158.7 95 80.0
AT5G59140 Arabidopsis thaliana HOM05D005875 ORTHO05D007213 2.3e-37 158.7 95 80.0
C09p51420 Brassica napus HOM05D005875 ORTHO05D007213 2.3e-37 158.7 95 80.0
BolC9t58002H Brassica oleracea HOM05D005875 ORTHO05D007213 2.3e-37 158.7 95 80.0
Thhalv10015122m.g Eutrema salsugineum HOM05D005875 ORTHO05D007213 2.3e-37 158.7 95 80.0
BcaB01g04606 Brassica carinata HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 78.9
A03p11880 Brassica napus HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 78.9
C03p13940 Brassica napus HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 78.9
BolC3t13842H Brassica oleracea HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 78.9
BraA03t10499Z Brassica rapa HOM05D005875 ORTHO05D007213 3.0e-37 158.3 95 78.9
SMO137G0055 Selaginella moellendorffii HOM05D005875 ORTHO05D007213 4.0e-37 157.9 99 74.7
BcaC04g19811 Brassica carinata HOM05D005875 ORTHO05D007213 5.2e-37 157.5 95 78.9
AagrBONN_evm.TU.Sc2ySwM_117.1366 Anthoceros agrestis HOM05D005875 ORTHO05D007213 1.5e-36 156.0 99 75.8
Carub.0008s1981 Capsella rubella HOM05D005875 ORTHO05D007213 4.4e-36 154.5 95 77.9
Eucgr.A01573 Eucalyptus grandis HOM05D005875 ORTHO05D007213 4.4e-36 154.5 142 61.3
Oeu002453.3 Olea europaea HOM05D005875 ORTHO05D007213 1.3e-35 152.9 150 58.0
Pp3c1_40610 Physcomitrium patens HOM05D005875 ORTHO05D007213 2.8e-35 151.8 99 69.7
Os11g0707700 Oryza sativa ssp. japonica HOM05D005875 ORTHO05D007213 1.8e-34 149.1 94 78.7
BcaB01g04618 Brassica carinata HOM05D005875 ORTHO05D007213 1.2e-33 146.4 87 78.2
Pp3c17_23040 Physcomitrium patens HOM05D005875 ORTHO05D007213 1.2e-33 146.4 98 69.4
GSVIVG01024863001 Vitis vinifera HOM05D005875 ORTHO05D007213 3.5e-33 144.8 75 90.7
Lsat_1_v5_gn_5_169860 Lactuca sativa HOM05D005875 ORTHO05D007213 7.3e-31 137.1 78 84.6
HanXRQChr11g0340611 Helianthus annuus HOM05D005875 ORTHO05D007213 1.6e-30 136.0 73 90.4
DCAR_005929 Daucus carota HOM05D005875 ORTHO05D007213 2.8e-30 135.2 73 89.0
BcaB08g36282 Brassica carinata HOM05D005875 ORTHO05D007213 3.6e-30 134.8 86 74.4
Haze_24201 Corylus avellana HOM05D005875 ORTHO05D007213 4.7e-30 134.4 72 90.3
Solyc06g076460.4 Solanum lycopersicum HOM05D005875 ORTHO05D007213 4.7e-30 134.4 76 84.2
Gohir.D03G120951 Gossypium hirsutum HOM05D005875 ORTHO05D007213 8.0e-30 133.7 99 70.7
AL48U10050 Arabidopsis lyrata HOM05D005875 ORTHO05D007213 1.0e-29 133.3 150 50.7
VMungo1080G0472 Vigna mungo HOM05D005875 ORTHO05D007213 1.4e-29 132.9 72 87.5
CBR_g20299 Chara braunii HOM05D005875 ORTHO05D007213 2.3e-29 132.1 100 66.0
Hund04909 Selenicereus undatus HOM05D005875 ORTHO05D007213 2.3e-29 132.1 72 87.5
MBI14_g02873_MAGBIO Magnolia biondii HOM05D005875 ORTHO05D007213 3.0e-29 131.7 72 87.5
Ca_20611_v3 Cicer arietinum L. HOM05D005875 ORTHO05D007213 8.9e-29 130.2 72 83.3
Cre01.g061442 Chlamydomonas reinhardtii HOM05D005875 ORTHO05D007213 3.2e-26 121.7 99 60.6
AUR62041948 Chenopodium quinoa HOM05D005875 ORTHO05D007213 1.6e-25 119.4 76 73.7
AUR62028437 Chenopodium quinoa HOM05D005875 ORTHO05D007213 7.8e-25 117.1 76 72.4
Gohir.A03G046200 Gossypium hirsutum HOM05D005875 ORTHO05D007213 7.8e-25 117.1 73 78.1
SGA_v2.0_scaffold104G30156 Striga asiatica HOM05D005875 ORTHO05D007213 7.8e-25 117.1 61 88.5
MELO3C020599.2 Cucumis melo HOM05D005875 ORTHO05D007213 1.0e-24 116.7 62 83.9
CARHR285400 Cardamine hirsuta HOM05D005875 ORTHO05D007213 3.0e-24 115.2 69 76.8
Zm00001eb371730 Zea mays HOM05D005875 ORTHO05D007213 3.3e-23 111.7 75 73.3
CsaV3_1G035700 Cucumis sativus L. HOM05D005875 ORTHO05D007213 4.3e-23 111.3 58 87.9
MCO15G569 Micromonas commoda HOM05D005875 ORTHO05D007213 4.7e-22 107.8 92 54.3
PRCOL_00005420 Prasinoderma coloniale HOM05D005875 ORTHO05D007213 4.7e-22 107.8 94 55.3
arahy.Tifrunner.gnm1.ann1.02RT51 Arachis hypogaea HOM05D005875 ORTHO05D007213 1.2e-20 103.2 62 80.6
Actinidia12881 Actinidia chinensis HOM05D005875 ORTHO05D007213 1.7e-19 99.4 57 86.0
Haze_27721 Corylus avellana HOM05D005875 ORTHO05D007213 6.6e-16 87.4 93 47.3
arahy.Tifrunner.gnm1.ann1.M3Y99M Arachis hypogaea HOM05D005875 ORTHO05D007213 5.8e-12 74.3 42 81.0
Cpa.g.sc81.58 Carica papaya HOM05D005875 ORTHO05D007213 1.9e-10 69.3 37 91.9


User provided reference genes

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