Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 4.4e-46 187.6 92 100.0
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 3.2e-41 171.4 95 92.6
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 4.4e-38 161.0 95 88.4
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.3e-34 149.4 89 85.4
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.5e-30 136.0 95 72.6
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 3.3e-30 134.8 90 73.3
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.4e-30 134.4 88 75.0
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.4e-30 134.4 88 75.0
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 5.7e-30 134.0 97 72.2
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 7.5e-30 133.7 97 71.1
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 1.3e-29 132.9 97 69.1
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.2e-29 132.1 95 68.4
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 2.2e-29 132.1 97 69.1
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 3.7e-29 131.3 95 69.5
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 4.8e-29 131.0 91 70.3
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 6.3e-29 130.6 97 70.1
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 6.3e-29 130.6 96 72.9
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 8.2e-29 130.2 95 67.4
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.1e-28 129.8 96 68.8
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.4e-28 129.4 96 72.9
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.8e-28 129.0 96 72.9
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-28 129.0 96 72.9
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-28 129.0 96 72.9
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.8e-28 129.0 96 72.9
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 3.1e-28 128.3 91 69.2
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 3.1e-28 128.3 90 71.1
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 3.1e-28 128.3 97 70.1
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 4.1e-28 127.9 97 69.1
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 4.1e-28 127.9 98 67.3
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 5.3e-28 127.5 89 69.7
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 5.3e-28 127.5 90 71.1
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 5.3e-28 127.5 97 69.1
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 5.3e-28 127.5 91 68.1
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 7.0e-28 127.1 95 68.4
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 7.0e-28 127.1 99 65.7
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.0e-28 127.1 96 71.9
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 7.0e-28 127.1 97 68.0
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.0e-28 127.1 89 70.8
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.6e-27 125.9 85 74.1
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 1.6e-27 125.9 91 68.1
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.0e-27 125.6 85 72.9
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 2.7e-27 125.2 91 69.2
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 2.7e-27 125.2 98 67.3
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.5e-27 124.8 89 70.8
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 4.5e-27 124.4 89 68.5
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 5.9e-27 124.0 97 64.9
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 5.9e-27 124.0 97 64.9
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 5.9e-27 124.0 98 64.3
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 7.7e-27 123.6 89 67.4
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 7.7e-27 123.6 97 66.0
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.3e-26 122.9 98 66.3
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.7e-26 122.5 87 67.8
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 2.2e-26 122.1 95 64.2
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.9e-26 121.7 97 67.0
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 2.9e-26 121.7 87 70.1
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 2.9e-26 121.7 99 64.6
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 3.8e-26 121.3 91 62.6
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 5.0e-26 120.9 88 65.9
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 1.5e-25 119.4 89 65.2
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 1.5e-25 119.4 97 64.9
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.9e-25 119.0 71 80.3
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 1.9e-25 119.0 99 62.6
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 1.9e-25 119.0 97 62.9
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.5e-25 118.6 98 63.3
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 4.2e-25 117.9 86 67.4
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 4.2e-25 117.9 98 61.2
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 7.2e-25 117.1 98 65.3
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 7.2e-25 117.1 97 64.9
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 7.2e-25 117.1 98 61.2
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 7.2e-25 117.1 100 59.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 9.4e-25 116.7 98 61.2
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.2e-24 116.3 98 62.2
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.2e-24 116.3 98 62.2
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 1.6e-24 115.9 71 78.9
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 1.6e-24 115.9 89 62.9
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 1.6e-24 115.9 98 60.2
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 2.7e-24 115.2 71 77.5
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.7e-24 115.2 97 63.9
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 2.7e-24 115.2 71 76.1
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 3.6e-24 114.8 98 60.2
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 3.6e-24 114.8 97 63.9
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.6e-24 114.8 71 74.6
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 4.7e-24 114.4 98 59.2
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.1e-24 114.0 98 58.2
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 6.1e-24 114.0 90 64.4
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 8.0e-24 113.6 71 73.2
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 8.0e-24 113.6 89 62.9
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 8.0e-24 113.6 71 73.2
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 8.0e-24 113.6 98 59.2
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 1.0e-23 113.2 71 73.2
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 1.0e-23 113.2 71 73.2
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.0e-23 113.2 71 76.1
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.4e-23 112.8 83 67.5
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.8e-23 112.5 98 61.2
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.8e-23 112.5 71 74.6
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 2.3e-23 112.1 71 74.6
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.3e-23 112.1 71 74.6
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.3e-23 112.1 72 77.8
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.3e-23 112.1 71 74.6
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 3.0e-23 111.7 71 71.8
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 3.0e-23 111.7 92 59.8
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 4.0e-23 111.3 98 60.2
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 4.0e-23 111.3 71 74.6
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 5.2e-23 110.9 71 71.8
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 5.2e-23 110.9 71 71.8
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 5.2e-23 110.9 89 64.0
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 6.8e-23 110.5 70 77.1
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 6.8e-23 110.5 85 68.2
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 6.8e-23 110.5 93 61.3
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 8.8e-23 110.2 98 59.2
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 8.8e-23 110.2 71 71.8
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 8.8e-23 110.2 71 71.8
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 8.8e-23 110.2 71 71.8
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 8.8e-23 110.2 71 74.6
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.2e-22 109.8 97 58.8
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 2.6e-22 108.6 70 75.7
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 3.4e-22 108.2 71 70.4
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 3.4e-22 108.2 71 70.4
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 4.4e-22 107.8 87 62.1
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 4.4e-22 107.8 71 76.1
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 4.4e-22 107.8 71 76.1
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 9.8e-22 106.7 82 64.6
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 9.8e-22 106.7 88 61.4
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.8e-22 106.7 88 61.4
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.8e-22 106.7 88 61.4
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 9.8e-22 106.7 88 61.4
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 9.8e-22 106.7 90 61.1
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 9.8e-22 106.7 70 77.1
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.3e-21 106.3 86 65.1
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 1.3e-21 106.3 86 65.1
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 1.3e-21 106.3 71 74.6
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 2.2e-21 105.5 84 63.1
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-21 104.8 88 61.4
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 3.7e-21 104.8 84 65.5
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 4.8e-21 104.4 82 63.4
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.8e-21 104.4 91 58.2
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 4.8e-21 104.4 90 61.1
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 1.8e-20 102.4 70 72.9
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.4e-20 102.1 88 60.2
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.4e-20 102.1 88 61.4
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 4.1e-20 101.3 83 65.1
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 4.1e-20 101.3 71 69.0
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 7.0e-20 100.5 61 80.3
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 2.7e-19 98.6 71 67.6
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 2.7e-19 98.6 69 66.7
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 7.7e-19 97.1 55 78.2
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 1.7e-18 95.9 63 74.6
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 3.8e-18 94.7 59 71.2
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 3.8e-10 68.2 82 47.6
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 5.0e-10 67.8 70 45.7
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.9e-09 65.9 44 63.6
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 5.6e-09 64.3 46 76.1
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 9.5e-09 63.5 95 44.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 6.1e-08 60.8 52 53.8
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 3.0e-07 58.5 64 43.8
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 7.5e-06 53.9 32 68.8


User provided reference genes

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