Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 1.5e-46 189.1 90 100.0
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 2.3e-39 165.2 91 90.1
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 1.5e-38 162.5 91 87.9
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 2.8e-37 158.3 91 85.7
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 4.7e-37 157.5 91 82.4
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 4.7e-37 157.5 91 82.4
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 4.7e-37 157.5 91 82.4
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 4.7e-37 157.5 91 83.5
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 4.7e-37 157.5 91 83.5
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 4.7e-37 157.5 91 83.5
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 1.1e-36 156.4 78 94.9
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 1.8e-36 155.6 91 82.4
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 1.8e-36 155.6 91 82.4
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 1.8e-36 155.6 91 82.4
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 3.1e-36 154.8 91 82.4
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 3.1e-36 154.8 91 80.2
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 4.0e-36 154.5 91 81.3
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 4.0e-36 154.5 91 83.5
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 5.2e-36 154.1 91 82.4
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 8.9e-36 153.3 91 82.4
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 1.2e-35 152.9 91 82.4
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 1.2e-35 152.9 91 82.4
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 1.5e-35 152.5 91 80.2
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 1.5e-35 152.5 91 80.2
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 2.0e-35 152.1 91 82.4
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 2.0e-35 152.1 91 78.0
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 2.6e-35 151.8 91 79.1
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 3.4e-35 151.4 91 78.0
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 3.4e-35 151.4 91 78.0
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 4.4e-35 151.0 91 79.1
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 4.4e-35 151.0 91 80.2
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 5.8e-35 150.6 91 79.1
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 5.8e-35 150.6 91 76.9
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 5.8e-35 150.6 91 76.9
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 5.8e-35 150.6 91 80.2
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 7.5e-35 150.2 91 79.1
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 7.5e-35 150.2 91 79.1
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 7.5e-35 150.2 91 79.1
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 7.5e-35 150.2 91 80.2
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 7.5e-35 150.2 91 80.2
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 7.5e-35 150.2 91 79.1
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 7.5e-35 150.2 91 78.0
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 7.5e-35 150.2 91 80.2
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 9.8e-35 149.8 91 78.0
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 9.8e-35 149.8 91 78.0
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 9.8e-35 149.8 91 80.2
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 1.3e-34 149.4 91 76.9
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 1.3e-34 149.4 91 78.0
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 1.7e-34 149.1 91 78.0
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 1.7e-34 149.1 91 80.2
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 1.7e-34 149.1 91 79.1
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 2.2e-34 148.7 91 76.9
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 2.2e-34 148.7 91 76.9
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 2.2e-34 148.7 91 76.9
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 2.2e-34 148.7 91 76.9
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 2.2e-34 148.7 91 79.1
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 2.2e-34 148.7 91 76.9
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 2.9e-34 148.3 91 78.0
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 2.9e-34 148.3 91 80.2
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 3.7e-34 147.9 91 75.8
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 3.7e-34 147.9 91 76.9
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 3.7e-34 147.9 91 79.1
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 4.9e-34 147.5 91 76.9
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 4.9e-34 147.5 91 78.0
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 6.4e-34 147.1 91 78.0
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 6.4e-34 147.1 91 78.0
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 6.4e-34 147.1 91 76.9
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 6.4e-34 147.1 91 76.9
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 6.4e-34 147.1 91 76.9
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 6.4e-34 147.1 91 76.9
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 8.3e-34 146.7 91 76.9
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 1.1e-33 146.4 91 75.8
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 1.4e-33 146.0 91 75.8
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 1.4e-33 146.0 91 75.8
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 1.4e-33 146.0 91 75.8
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 1.4e-33 146.0 91 75.8
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 1.4e-33 146.0 91 76.9
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 2.4e-33 145.2 91 75.8
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 2.4e-33 145.2 91 76.9
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 3.2e-33 144.8 91 74.7
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 3.2e-33 144.8 91 74.7
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 3.2e-33 144.8 91 75.8
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 4.1e-33 144.4 91 76.9
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 4.1e-33 144.4 91 75.8
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 5.4e-33 144.1 91 75.8
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 5.4e-33 144.1 91 74.7
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 5.4e-33 144.1 91 75.8
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 7.0e-33 143.7 91 75.8
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 7.0e-33 143.7 91 74.7
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 7.0e-33 143.7 91 74.7
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 9.2e-33 143.3 91 75.8
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 9.2e-33 143.3 91 74.7
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 1.2e-32 142.9 91 75.8
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 1.6e-32 142.5 91 72.5
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.1e-32 142.1 91 74.7
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 2.1e-32 142.1 91 74.7
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 2.7e-32 141.7 91 73.6
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 4.6e-32 141.0 91 73.6
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 6.0e-32 140.6 91 73.6
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 6.0e-32 140.6 91 74.7
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 7.8e-32 140.2 91 72.5
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 7.8e-32 140.2 91 72.5
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 1.7e-31 139.0 91 74.7
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.7e-31 139.0 91 72.5
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 3.0e-31 138.3 91 74.7
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.0e-31 138.3 91 71.4
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 3.9e-31 137.9 91 72.5
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 5.1e-31 137.5 91 70.3
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 3.3e-30 134.8 90 68.9
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 3.6e-29 131.3 79 79.7
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 9.2e-25 116.7 91 60.4
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 2.7e-24 115.2 91 62.6
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 1.9e-22 109.0 91 59.3
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 2.5e-22 108.6 120 49.2
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 5.6e-22 107.5 91 60.4
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.2e-21 106.3 91 58.2
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 1.6e-21 105.9 91 54.9
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 6.2e-21 104.0 91 56.0
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 2.4e-20 102.1 91 52.7
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 7.6e-19 97.1 91 51.6
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 3.8e-18 94.7 76 57.9
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 8.4e-18 93.6 91 50.5
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 1.9e-17 92.4 91 49.5
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 4.2e-17 91.3 55 74.5
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 2.1e-16 89.0 48 85.4
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 1.5e-11 72.8 48 68.8
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 1.7e-07 59.3 91 31.9
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 3.0e-07 58.5 90 40.0
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 3.3e-06 55.1 90 35.6


User provided reference genes

Program Settings