Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 4.7e-126 454.5 227 100.0
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 5.1e-112 407.9 229 90.0
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.8e-85 319.7 222 74.8
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.2e-84 317.0 222 74.3
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.2e-84 317.0 222 74.3
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 1.7e-75 286.6 231 68.0
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 1.7e-75 286.6 231 68.0
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 1.1e-74 283.9 242 64.0
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 3.5e-73 278.9 188 75.0
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 9.6e-71 270.8 227 65.2
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 4.8e-70 268.5 207 68.6
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 1.8e-69 266.5 236 63.1
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.5e-68 263.5 193 71.0
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 1.5e-68 263.5 202 68.3
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 5.8e-68 261.5 158 79.7
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 5.8e-68 261.5 184 72.3
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 7.6e-68 261.2 217 66.4
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 1.7e-67 260.0 193 69.9
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.7e-67 260.0 179 70.9
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 2.9e-67 259.2 163 77.9
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 5.0e-67 258.5 190 69.5
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 6.5e-67 258.1 202 65.8
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 8.4e-67 257.7 171 73.1
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 1.9e-66 256.5 228 61.0
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 1.9e-66 256.5 185 70.3
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.2e-66 255.8 190 68.4
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 5.5e-66 255.0 192 68.2
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 5.5e-66 255.0 213 64.8
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 7.1e-66 254.6 213 64.3
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 7.1e-66 254.6 160 77.5
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 9.3e-66 254.2 222 62.2
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 1.2e-65 253.8 225 60.4
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 1.2e-65 253.8 226 63.3
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 1.6e-65 253.4 185 70.3
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 4.6e-65 251.9 216 62.5
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 6.1e-65 251.5 167 74.3
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 1.0e-64 250.8 199 64.8
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.8e-64 250.0 163 75.5
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 3.0e-64 249.2 192 66.1
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 3.0e-64 249.2 167 81.4
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 3.0e-64 249.2 159 76.1
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 3.9e-64 248.8 158 76.6
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 8.7e-64 247.7 159 75.5
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.9e-63 246.5 167 73.7
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 2.5e-63 246.1 171 71.9
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 3.3e-63 245.7 193 65.8
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 5.7e-63 245.0 227 60.4
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 5.7e-63 245.0 227 60.4
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 5.7e-63 245.0 192 67.2
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 7.4e-63 244.6 222 59.5
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 9.7e-63 244.2 170 70.6
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 9.7e-63 244.2 212 61.8
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 2.2e-62 243.0 178 68.5
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 6.3e-62 241.5 152 75.0
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 1.4e-61 240.4 163 73.6
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 1.8e-61 240.0 182 68.7
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.8e-61 240.0 227 59.5
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 3.1e-61 239.2 202 60.9
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 4.1e-61 238.8 215 61.9
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 4.1e-61 238.8 215 61.9
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 5.3e-61 238.4 227 59.9
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 9.0e-61 237.7 168 71.4
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.2e-60 237.3 158 71.5
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 1.2e-60 237.3 151 75.5
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 2.0e-60 236.5 224 57.1
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 2.0e-60 236.5 203 62.6
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 2.0e-60 236.5 167 71.9
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 2.0e-60 236.5 139 79.1
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 3.4e-60 235.7 174 67.8
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 3.4e-60 235.7 214 58.4
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 4.5e-60 235.3 185 65.9
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 4.5e-60 235.3 188 66.0
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 5.9e-60 235.0 181 66.9
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 7.7e-60 234.6 167 71.3
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 7.7e-60 234.6 220 59.1
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 1.0e-59 234.2 183 65.0
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 1.7e-59 233.4 227 59.0
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 1.7e-59 233.4 168 69.6
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 2.2e-59 233.0 162 72.2
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 2.2e-59 233.0 141 77.3
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 2.9e-59 232.6 181 66.3
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 3.8e-59 232.3 193 62.2
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 3.8e-59 232.3 147 74.8
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 3.8e-59 232.3 220 59.1
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 3.8e-59 232.3 226 59.3
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 5.0e-59 231.9 203 58.6
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 6.5e-59 231.5 199 63.8
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 6.5e-59 231.5 168 68.5
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 1.1e-58 230.7 214 59.3
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 1.1e-58 230.7 129 84.5
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 1.9e-58 229.9 218 57.3
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 1.9e-58 229.9 136 80.9
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 4.2e-58 228.8 184 67.9
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 5.5e-58 228.4 128 82.0
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 9.4e-58 227.6 200 62.0
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 1.2e-57 227.3 193 61.1
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.6e-57 226.9 192 62.0
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 2.7e-57 226.1 214 58.9
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 3.6e-57 225.7 194 61.9
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.6e-57 225.7 186 62.4
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 4.6e-57 225.3 136 78.7
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 4.6e-57 225.3 136 78.7
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 4.6e-57 225.3 125 83.2
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 7.9e-57 224.6 163 69.3
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 7.9e-57 224.6 181 65.7
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.4e-56 223.8 199 60.8
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 5.1e-56 221.9 168 66.7
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 5.7e-55 218.4 220 54.5
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.7e-54 216.9 195 57.9
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 4.8e-54 215.3 182 63.2
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 3.8e-51 205.7 119 79.8
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 5.0e-51 205.3 183 60.7
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 3.2e-50 202.6 135 73.3
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 9.4e-50 201.1 178 55.6
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 7.9e-49 198.0 222 47.7
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 3.0e-48 196.1 131 67.9
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.7e-46 190.3 150 59.3
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.7e-46 190.3 150 59.3
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 3.7e-46 189.1 148 60.8
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 4.8e-46 188.7 127 67.7
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 1.1e-45 187.6 168 59.5
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.5e-36 156.0 113 69.9
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 2.6e-31 139.8 129 55.0
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 9.8e-31 137.9 78 82.1
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 2.0e-28 130.2 192 41.7
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 1.0e-27 127.9 118 56.8
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 1.7e-22 110.5 81 69.1
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 1.7e-22 110.5 124 47.6
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 2.2e-22 110.2 141 42.6
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 4.3e-18 95.9 61 72.1
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 3.6e-17 92.8 59 71.2
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 2.0e-15 87.0 56 71.4
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 7.5e-15 85.1 105 43.8
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.7e-14 84.0 49 77.6
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 8.3e-14 81.6 128 43.8
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 1.0e-11 74.7 56 66.1
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 5.0e-11 72.4 59 67.8
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.5e-10 70.9 45 66.7
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 8.0e-09 65.1 33 87.9
Pp3c19_3370 Physcomitrium patens HOM05D005836 ORTHO05D007335 5.8e-07 58.9 121 33.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 7.5e-07 58.5 74 45.9


User provided reference genes

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