Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 0.0e+00 1397.1 747 100.0
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 0.0e+00 1172.1 750 84.9
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 1.2e-295 1019.6 757 76.4
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 2.6e-213 746.1 768 60.4
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 5.7e-213 745.0 765 60.5
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.7e-210 736.1 769 60.1
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.7e-210 736.1 766 59.7
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 8.6e-209 731.1 766 59.5
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.5e-200 703.7 751 59.3
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 2.1e-183 646.7 770 53.5
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 6.9e-166 588.6 777 51.7
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 7.6e-165 585.1 746 50.3
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 1.3e-161 574.3 758 51.8
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.9e-160 570.5 741 50.7
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 1.1e-158 564.7 763 50.5
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 6.7e-153 545.4 762 47.8
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 4.3e-152 542.7 761 49.3
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.4e-150 537.0 759 48.2
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 3.0e-145 520.0 771 46.6
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 1.1e-144 518.1 761 47.7
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 2.4e-142 510.4 766 45.6
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 4.1e-142 509.6 782 46.7
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 3.4e-141 506.5 774 45.6
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 4.5e-141 506.1 826 43.3
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 1.7e-140 504.2 757 48.1
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 7.2e-139 498.8 763 45.7
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 3.6e-138 496.5 767 46.0
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 4.6e-138 496.1 762 45.9
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 8.8e-137 491.9 745 46.4
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 2.5e-131 473.8 791 44.9
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 1.2e-130 471.5 768 45.1
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 6.1e-130 469.2 756 43.9
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 8.8e-129 465.3 789 45.5
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 2.4e-126 457.2 754 43.0
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 7.0e-126 455.7 752 44.9
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 1.2e-125 454.9 797 42.7
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 2.6e-125 453.8 756 43.0
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 3.5e-125 453.4 906 38.4
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 1.0e-124 451.8 835 42.3
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 2.5e-123 447.2 750 41.3
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 1.6e-122 444.5 783 43.8
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 8.8e-121 438.7 765 43.4
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 5.3e-118 429.5 777 42.2
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 1.2e-117 428.3 796 43.7
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 2.6e-117 427.2 799 43.7
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 8.0e-114 415.6 734 41.0
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.0e-113 415.2 925 35.2
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 8.8e-113 412.1 747 43.4
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 2.6e-112 410.6 778 43.2
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 2.2e-111 407.5 769 39.5
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 1.6e-106 391.3 770 39.2
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 2.6e-104 384.0 763 39.7
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 6.3e-103 379.4 719 39.9
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 5.4e-102 376.3 764 38.7
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 5.4e-102 376.3 768 39.3
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 5.5e-99 366.3 769 38.4
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 9.5e-99 365.5 769 38.5
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 1.0e-97 362.1 779 38.3
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 7.5e-96 355.9 743 38.2
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 9.8e-96 355.5 707 39.9
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 8.3e-95 352.4 758 38.4
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.3e-92 345.1 757 37.5
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 3.9e-92 343.6 752 37.5
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 1.6e-90 338.2 770 38.2
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 3.6e-90 337.0 786 37.8
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 6.1e-90 336.3 782 35.9
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 8.0e-90 335.9 773 36.4
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 1.8e-89 334.7 739 38.2
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 2.0e-88 331.3 777 36.2
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 4.4e-88 330.1 741 37.7
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 2.9e-87 327.4 782 35.2
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 3.7e-87 327.0 754 37.5
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 8.3e-87 325.9 686 38.8
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 7.0e-86 322.8 768 35.4
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.2e-85 322.0 784 36.0
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 4.6e-85 320.1 753 37.6
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 1.0e-84 318.9 784 36.0
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 1.7e-84 318.2 768 35.2
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 1.7e-84 318.2 767 35.9
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 4.3e-83 313.5 743 36.2
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 4.3e-83 313.5 792 37.8
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 7.3e-83 312.8 722 37.5
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 8.9e-81 305.8 728 37.0
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 1.2e-80 305.4 814 36.5
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 2.9e-79 300.8 769 35.1
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.6e-77 295.0 744 36.6
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 1.9e-75 288.1 785 37.1
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 4.7e-74 283.5 708 36.9
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.2e-72 278.9 761 35.5
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 3.4e-72 277.3 795 35.7
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 1.3e-71 275.4 743 34.2
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 1.1e-70 272.3 757 33.7
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 2.4e-70 271.2 800 34.9
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 3.2e-70 270.8 789 35.5
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 7.1e-70 269.6 748 34.6
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 7.1e-70 269.6 751 34.2
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 1.7e-68 265.0 796 35.2
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 1.6e-66 258.5 803 34.9
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 5.2e-65 253.4 779 33.4
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 6.8e-65 253.1 712 33.3
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 7.6e-64 249.6 758 34.0
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.2e-61 242.3 719 34.2
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 1.6e-61 241.9 713 35.2
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 6.0e-61 240.0 799 33.4
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 6.0e-61 240.0 799 33.4
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 7.8e-61 239.6 720 34.7
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 1.7e-60 238.4 702 33.8
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 4.3e-59 233.8 705 33.0
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 9.6e-59 232.6 804 33.3
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 9.6e-59 232.6 804 33.3
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 9.6e-59 232.6 769 33.6
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 1.3e-58 232.3 806 33.0
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 8.1e-58 229.6 783 34.2
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 2.4e-57 228.0 779 33.8
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 3.1e-57 227.6 785 34.1
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 3.1e-57 227.6 786 34.2
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 9.0e-57 226.1 751 31.8
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 9.9e-56 222.6 780 33.6
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 3.8e-55 220.7 785 29.4
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 3.9e-52 210.7 768 28.8
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 1.4e-46 192.2 175 60.0
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.9e-46 191.8 741 29.1
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 2.4e-41 174.9 298 44.6
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 5.1e-36 157.1 125 62.4
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 6.7e-36 156.8 677 28.2
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 6.2e-34 150.2 578 31.5
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 1.1e-33 149.4 773 28.5
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.2e-31 141.7 707 28.1
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 2.9e-23 114.8 830 26.6
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 2.0e-16 92.0 769 25.4
Zm00001eb082760 Zea mays HOM05D019841 ORTHO05D006509 1.6e-13 82.4 757 24.3
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 5.1e-12 77.4 95 46.3
SEGI_32826 Sequoiadendron giganteum HOM05D005664 ORTHO05D006509 5.3e-09 67.4 726 23.4
AUR62017309 Chenopodium quinoa HOM05D005664 ORTHO05D006509 4.5e-08 64.3 102 39.2
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 4.2e-06 57.8 43 69.8


User provided reference genes

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