Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 0.0e+00 1168.3 609 100.0
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 8.7e-260 900.2 596 79.7
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 5.4e-209 731.5 611 66.6
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 6.5e-207 724.5 656 62.8
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.9e-206 723.0 640 63.1
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 2.3e-204 716.1 605 66.4
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 2.1e-181 639.8 612 56.7
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 6.8e-180 634.8 598 58.0
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 9.8e-179 630.9 593 59.9
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 2.4e-177 626.3 598 58.5
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.4e-177 626.3 585 58.6
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.0e-175 620.9 599 57.1
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 1.9e-174 616.7 558 60.2
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 3.1e-172 609.4 602 60.0
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.1e-169 600.9 584 55.7
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 1.6e-168 597.0 571 59.2
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.0e-167 592.8 555 59.1
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 2.5e-166 589.7 597 53.8
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 4.3e-166 589.0 596 55.5
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.6e-165 585.9 597 56.6
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 1.4e-164 583.9 593 54.8
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 1.3e-162 577.4 600 55.3
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 8.4e-162 574.7 542 57.9
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 1.2e-160 570.9 585 53.8
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 6.0e-160 568.5 595 56.3
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 7.8e-160 568.2 650 51.2
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 1.7e-159 567.0 541 56.2
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.3e-157 560.8 535 57.6
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 2.6e-155 553.1 428 65.2
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 1.7e-154 550.4 500 59.0
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 2.2e-154 550.1 593 54.3
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 2.9e-154 549.7 451 61.4
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.1e-153 547.7 432 63.4
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 2.1e-152 543.5 454 60.1
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 6.0e-152 542.0 435 61.8
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 6.0e-152 542.0 583 52.0
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 1.8e-151 540.4 609 50.1
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 2.3e-151 540.0 530 55.7
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.1e-151 538.9 528 56.4
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 1.1e-150 537.7 583 50.8
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.5e-150 537.3 573 55.3
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 4.8e-149 532.3 590 51.4
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 4.8e-149 532.3 525 55.4
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 4.8e-149 532.3 526 54.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 1.5e-147 527.3 577 50.3
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 4.5e-147 525.8 583 52.7
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 2.9e-146 523.1 562 51.1
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 8.4e-146 521.5 541 53.6
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 5.5e-145 518.8 514 54.1
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 7.1e-145 518.5 444 58.8
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 7.1e-145 518.5 517 55.5
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 1.6e-144 517.3 573 54.1
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 1.3e-143 514.2 516 53.7
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 2.3e-143 513.5 568 51.4
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 2.3e-143 513.5 571 51.0
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 3.9e-143 512.7 451 58.8
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 5.1e-143 512.3 425 58.6
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.1e-142 511.1 566 51.4
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 3.3e-142 509.6 542 52.8
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 9.6e-142 508.1 570 50.7
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 1.3e-141 507.7 567 49.7
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.3e-141 507.7 594 51.7
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 2.8e-141 506.5 525 53.1
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 4.8e-141 505.8 558 49.3
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.8e-140 503.8 471 55.6
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 5.8e-139 498.8 427 58.8
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 2.9e-138 496.5 578 48.4
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 8.4e-138 495.0 584 50.3
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.9e-137 493.8 576 49.3
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 3.5e-136 489.6 370 65.4
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 7.9e-136 488.4 512 52.1
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 1.0e-135 488.0 591 49.7
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.1e-134 484.6 427 55.7
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 1.5e-134 484.2 508 52.0
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 2.8e-133 479.9 535 49.7
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 6.3e-133 478.8 871 37.7
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 3.1e-132 476.5 471 52.7
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 2.6e-131 473.4 727 40.9
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 5.9e-131 472.2 546 50.9
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.8e-130 469.5 436 53.7
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 1.0e-127 461.5 454 50.4
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 4.1e-124 449.5 570 45.4
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 3.4e-123 446.4 448 53.3
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 5.0e-122 442.6 494 49.8
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.1e-121 441.4 550 47.3
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 5.5e-121 439.1 435 54.3
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 7.9e-120 435.3 363 70.5
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.4e-119 434.5 517 46.0
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.3e-119 433.7 325 65.2
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 2.6e-115 420.2 337 62.6
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 5.9e-115 419.1 360 58.3
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 2.2e-114 417.2 448 54.9
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.0e-114 416.0 538 48.0
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 2.8e-109 400.2 533 45.0
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 2.0e-107 394.0 472 46.8
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 3.8e-106 389.8 210 91.9
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 6.1e-104 382.5 596 41.6
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 8.0e-104 382.1 509 47.2
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 1.3e-101 374.8 457 47.5
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.7e-101 373.2 596 40.8
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 3.2e-97 360.1 287 62.7
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 9.1e-92 342.0 500 44.8
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 7.7e-91 339.0 631 36.9
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 6.1e-88 329.3 542 38.6
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 1.2e-86 325.1 565 40.0
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 5.7e-86 322.8 431 42.9
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 1.7e-85 321.2 301 56.8
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 3.7e-85 320.1 319 52.7
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 4.7e-80 303.1 600 38.2
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.8e-79 301.2 235 63.0
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 6.4e-77 292.7 423 40.7
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.3e-71 274.2 331 47.1
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 8.9e-71 272.3 289 52.6
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 3.7e-69 266.9 500 34.2
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 9.2e-68 262.3 210 61.9
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 4.9e-61 240.0 199 63.3
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 1.4e-60 238.4 297 46.1
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 8.9e-55 219.2 234 49.1
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 1.5e-54 218.4 329 42.6
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 7.1e-52 209.5 338 37.9
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 9.6e-49 199.1 194 54.1
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 1.4e-47 195.3 275 44.0
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 1.2e-46 192.2 245 45.7
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.8e-45 187.2 577 30.2
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.1e-44 185.7 122 74.6
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 3.2e-44 184.1 232 45.3
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 4.2e-44 183.7 260 43.1
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 3.0e-42 177.6 405 29.9
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 4.3e-41 173.7 308 38.0
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.3e-39 166.8 123 64.2
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.2e-36 157.1 268 41.8
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 5.6e-33 146.7 296 37.2
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 6.9e-31 139.8 296 34.5
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.3e-26 124.8 107 60.7
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 9.6e-25 119.4 86 65.1
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.3e-24 119.0 85 64.7
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.4e-23 114.8 101 60.4
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 8.7e-18 96.3 96 49.0
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.9e-17 95.1 91 54.9
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 5.7e-17 93.6 81 58.0


User provided reference genes

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