Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 0.0e+00 1644.4 878 100.0
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 0.0e+00 1334.7 874 83.1
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 0.0e+00 1141.7 889 72.0
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 3.9e-261 905.2 887 61.4
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 8.7e-245 850.9 883 59.5
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 4.5e-241 838.6 888 58.3
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.9e-241 838.2 888 58.3
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.7e-240 836.6 886 58.9
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 8.5e-216 754.6 916 52.9
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 2.1e-214 750.0 916 52.3
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.2e-209 734.2 817 57.0
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 2.8e-198 696.4 924 51.4
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 5.0e-176 622.5 790 52.8
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 6.8e-173 612.1 939 46.3
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 7.5e-172 608.6 957 45.6
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.2e-163 580.5 950 45.7
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 1.1e-162 578.2 871 46.3
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.4e-162 577.0 950 45.6
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 3.2e-162 576.6 920 45.0
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.9e-159 567.4 949 42.7
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 1.6e-153 547.7 895 45.9
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 1.0e-152 545.0 924 45.3
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 3.3e-151 540.0 816 46.7
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 4.0e-149 533.1 931 42.3
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 5.3e-149 532.7 927 43.7
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 1.5e-148 531.2 845 46.0
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 5.8e-148 529.3 930 44.4
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 4.9e-147 526.2 968 41.8
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 2.7e-145 520.4 936 42.3
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.8e-144 517.7 939 42.2
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 2.3e-144 517.3 922 42.0
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 2.8e-142 510.4 940 41.6
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 2.6e-140 503.8 912 43.0
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 3.0e-136 490.3 891 40.2
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 3.9e-136 490.0 914 39.6
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 3.3e-135 486.9 908 42.6
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 4.3e-135 486.5 932 41.0
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 1.1e-133 481.9 906 41.5
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 4.0e-133 479.9 871 43.1
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 4.0e-133 479.9 924 41.3
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 6.9e-133 479.2 1020 38.5
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 1.2e-132 478.4 929 40.2
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.5e-132 478.0 964 39.8
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 7.6e-132 475.7 928 39.8
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 6.5e-131 472.6 791 45.9
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 1.6e-129 468.0 896 39.8
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 1.0e-128 465.3 885 39.3
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 3.3e-127 460.3 909 41.5
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 4.3e-127 459.9 753 45.4
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.9e-122 444.5 921 39.5
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 4.2e-122 443.4 956 38.1
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 5.5e-122 443.0 919 38.8
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 2.1e-121 441.0 868 41.8
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 8.8e-120 435.6 905 39.4
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 3.3e-119 433.7 934 39.8
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 3.7e-118 430.3 921 38.7
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 3.7e-118 430.3 925 38.9
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 1.5e-116 424.9 910 37.8
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 2.6e-116 424.1 901 39.4
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 2.9e-115 420.6 928 39.0
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 5.0e-115 419.9 937 38.7
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 9.4e-114 415.6 927 36.8
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 3.6e-113 413.7 914 37.3
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 7.9e-113 412.5 925 38.7
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 3.3e-111 407.1 823 41.4
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 2.8e-110 404.1 916 38.8
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 3.4e-108 397.1 926 38.7
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 6.5e-107 392.9 869 38.7
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 8.5e-107 392.5 936 37.1
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 4.2e-106 390.2 850 38.2
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 9.4e-106 389.0 924 38.7
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 1.2e-105 388.7 937 38.7
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.7e-105 387.5 986 37.8
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 6.1e-105 386.3 810 40.2
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 3.7e-102 377.1 941 38.3
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.4e-101 375.2 936 36.6
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 1.2e-100 372.1 927 37.4
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 1.7e-99 368.2 896 37.3
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 6.5e-99 366.3 928 36.7
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 2.1e-97 361.3 918 36.2
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.7e-97 360.9 946 35.8
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.2e-95 355.5 907 36.7
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 2.6e-95 354.4 887 35.5
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 4.4e-95 353.6 901 37.8
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 5.7e-95 353.2 932 37.3
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 3.7e-94 350.5 924 34.6
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 5.3e-93 346.7 919 35.7
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 1.6e-92 345.1 916 35.8
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 5.9e-92 343.2 981 33.5
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 3.2e-90 337.4 933 36.4
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 9.4e-90 335.9 938 34.3
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 3.6e-89 334.0 862 35.8
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 3.6e-89 334.0 900 34.8
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 2.6e-87 327.8 896 35.5
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 2.8e-86 324.3 929 34.8
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 6.3e-86 323.2 926 34.9
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 2.4e-85 321.2 914 35.4
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 9.1e-85 319.3 865 34.5
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 5.0e-83 313.5 866 33.6
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 5.0e-83 313.5 643 40.6
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 7.0e-77 293.1 889 33.7
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.2e-76 292.4 914 32.7
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 4.4e-71 273.9 896 33.5
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 1.1e-69 269.2 1033 31.8
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.0e-67 262.7 876 32.8
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 1.1e-66 259.2 905 31.6
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 3.0e-59 234.6 912 29.5
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 3.6e-57 227.6 846 29.8
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 1.7e-54 218.8 872 31.4
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 9.2e-53 213.0 467 40.3
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.0e-51 209.5 427 36.8
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.3e-50 204.5 427 36.3
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 7.3e-50 203.4 156 69.9
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 2.1e-44 185.3 225 55.1
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 5.1e-35 154.1 158 58.2
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.9e-34 152.1 303 44.2
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 7.1e-29 133.7 460 32.4
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 4.6e-28 131.0 273 38.1
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.9e-26 125.6 1018 25.3
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 2.5e-26 125.2 263 39.9
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 5.3e-24 117.5 159 48.4
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 1.0e-22 113.2 102 62.7
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 4.9e-22 110.9 164 44.5
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 2.6e-15 88.6 77 58.4
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 5.7e-10 70.9 810 23.5
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 7.4e-10 70.5 180 32.8
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 2.8e-09 68.6 187 29.9
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 9.0e-08 63.5 43 55.8
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 1.2e-07 63.2 287 28.2


User provided reference genes

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