Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 9.7e-84 313.5 169 100.0
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 5.0e-72 274.6 168 93.5
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 5.7e-60 234.6 171 82.5
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.3e-51 206.8 174 71.8
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.7e-49 199.1 174 71.8
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 5.0e-48 194.9 174 71.3
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 2.5e-47 192.6 174 70.7
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.6e-46 189.9 174 70.1
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.3e-45 186.0 174 69.5
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.0e-41 172.9 181 61.9
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 4.5e-41 171.8 179 62.0
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.8e-37 159.8 159 64.2
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.2e-36 157.1 176 60.2
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.4e-34 149.4 160 61.2
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 1.7e-32 143.3 179 57.0
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 3.6e-30 135.6 167 55.1
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 3.1e-29 132.5 175 57.1
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 6.8e-29 131.3 108 71.3
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 1.2e-28 130.6 174 54.0
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.5e-28 130.2 152 58.6
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 2.0e-28 129.8 118 66.9
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.0e-28 129.8 153 57.5
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 2.6e-28 129.4 173 56.6
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 5.8e-28 128.3 124 67.7
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 7.5e-28 127.9 117 68.4
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.3e-27 127.1 176 54.0
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 2.9e-27 125.9 116 63.8
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 3.7e-27 125.6 117 66.7
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 4.9e-27 125.2 167 52.1
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 6.4e-27 124.8 169 53.8
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.4e-26 123.6 128 64.8
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.4e-26 123.6 128 64.8
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.4e-26 123.6 128 64.8
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.9e-26 123.2 152 57.2
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 5.4e-26 121.7 134 61.2
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 7.0e-26 121.3 169 52.7
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 9.2e-26 120.9 128 64.1
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 9.2e-26 120.9 181 53.0
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 1.2e-25 120.6 170 55.3
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 1.2e-25 120.6 166 53.0
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.6e-25 120.2 151 55.0
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 2.7e-25 119.4 126 65.1
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 3.5e-25 119.0 114 65.8
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.5e-25 119.0 127 63.8
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 4.6e-25 118.6 172 54.7
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.7e-24 116.7 115 67.0
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.7e-24 116.7 164 50.6
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.0e-24 115.9 112 70.5
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 3.9e-24 115.5 101 73.3
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 8.6e-24 114.4 168 51.8
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 1.1e-23 114.0 154 53.9
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.1e-23 114.0 115 66.1
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 1.5e-23 113.6 133 57.9
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.5e-23 113.6 118 61.0
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 1.5e-23 113.6 163 53.4
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 2.5e-23 112.8 148 55.4
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 2.5e-23 112.8 183 49.7
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.3e-23 112.5 169 50.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 4.3e-23 112.1 101 70.3
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 4.3e-23 112.1 101 70.3
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.6e-23 111.7 107 72.0
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 7.3e-23 111.3 104 71.2
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 9.5e-23 110.9 169 49.7
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 1.2e-22 110.5 152 54.6
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.2e-22 110.5 169 50.3
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.8e-22 109.4 174 47.7
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 2.8e-22 109.4 169 47.9
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.3e-21 106.3 151 45.7
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.3e-21 106.3 164 49.4
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.1e-21 105.9 169 49.1
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 6.8e-21 104.8 204 43.6
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 6.8e-21 104.8 131 58.8
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 8.9e-21 104.4 115 61.7
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.5e-20 103.6 165 48.5
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 4.4e-20 102.1 172 48.3
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 4.4e-20 102.1 108 65.7
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 4.4e-20 102.1 108 62.0
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 5.8e-20 101.7 172 48.8
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 5.8e-20 101.7 124 61.3
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 7.5e-20 101.3 115 63.5
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 7.5e-20 101.3 105 66.7
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 9.8e-20 100.9 103 65.0
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.3e-19 100.5 109 60.6
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.7e-19 100.1 107 64.5
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.2e-19 99.8 174 48.3
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.2e-19 99.8 206 43.7
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.9e-19 99.4 104 65.4
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 2.9e-19 99.4 133 57.9
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 3.7e-19 99.0 107 65.4
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 3.7e-19 99.0 97 71.1
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 3.7e-19 99.0 97 71.1
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 4.9e-19 98.6 181 48.1
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 4.9e-19 98.6 115 60.9
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 6.4e-19 98.2 122 56.6
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 1.1e-18 97.4 99 65.7
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.9e-18 96.7 172 44.2
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 1.9e-18 96.7 172 44.2
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 1.9e-18 96.7 153 47.7
FvH4_3g42261 Fragaria vesca HOM05D019050 ORTHO05D035443 2.4e-18 96.3 199 44.2
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 4.1e-18 95.5 175 44.0
FAN16G1216 Fragaria x ananassa HOM05D019050 ORTHO05D035374 4.1e-18 95.5 199 44.2
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 4.1e-18 95.5 98 66.3
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 5.4e-18 95.1 118 60.2
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 5.4e-18 95.1 87 74.7
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 9.2e-18 94.4 96 64.6
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 9.2e-18 94.4 96 64.6
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 9.2e-18 94.4 110 62.7
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.6e-17 93.6 96 66.7
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 1.6e-17 93.6 167 46.1
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 1.6e-17 93.6 167 46.1
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.6e-17 93.6 130 54.6
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 2.1e-17 93.2 86 70.9
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 2.7e-17 92.8 164 47.0
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 3.5e-17 92.4 105 63.8
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 3.5e-17 92.4 105 63.8
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.5e-17 92.4 146 47.3
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 3.5e-17 92.4 127 55.1
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 4.6e-17 92.0 105 63.8
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 7.8e-17 91.3 105 63.8
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.3e-16 90.5 99 63.6
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.3e-16 90.5 138 52.9
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.3e-16 90.5 103 62.1
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.3e-16 90.5 86 69.8
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.3e-16 90.5 183 45.4
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 2.3e-16 89.7 179 45.8
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.3e-16 89.7 109 60.6
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 3.9e-16 89.0 112 58.0
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 5.1e-16 88.6 110 60.9
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.1e-15 87.4 113 56.6
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 2.5e-15 86.3 120 55.0
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 7.3e-15 84.7 165 44.8
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.8e-14 82.8 99 61.6
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.8e-14 82.8 93 60.2
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.7e-14 82.0 107 58.9
FAN11G3625 Fragaria x ananassa HOM05D019050 ORTHO05D035443 4.7e-14 82.0 147 46.9
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.2e-14 81.6 108 56.5
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 6.2e-14 81.6 190 40.5
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 8.1e-14 81.3 107 56.1
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.1e-13 80.9 100 60.0
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.1e-13 80.9 98 60.2
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.1e-13 80.9 114 56.1
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 2.3e-13 79.7 128 47.7
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 3.1e-13 79.3 123 56.9
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 2.0e-12 76.6 147 46.3
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 7.5e-12 74.7 68 73.5
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 9.9e-12 74.3 68 75.0
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.3e-11 73.9 109 48.6
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 2.9e-11 72.8 85 56.5
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.9e-11 72.0 72 68.1
FAN21G1050 Fragaria x ananassa HOM05D019050 ORTHO05D204215 8.3e-11 71.2 197 39.6
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 3.2e-10 69.3 106 50.0
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 4.1e-10 68.9 156 39.1
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.4e-10 68.6 68 70.6
vmacro12024 Vaccinium macrocarpon HOM05D041616 ORTHO05D005062 5.4e-10 68.6 146 43.8
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.1e-09 66.6 68 63.2
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 4.6e-09 65.5 161 39.1
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 6.0e-09 65.1 106 49.1
Medtr5g032760 Medicago truncatula HOM05D011393 ORTHO05D013493 3.0e-08 62.8 163 38.7
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 2.5e-07 59.7 102 42.2
FAN25G0864 Fragaria x ananassa HOM05D019050 ORTHO05D035443 7.3e-07 58.2 146 38.4
Phvul.007G239300 Phaseolus vulgaris HOM05D011393 ORTHO05D013493 2.8e-06 56.2 111 40.5


User provided reference genes

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