Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 4.2e-94 348.6 264 100.0
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 3.4e-75 285.8 246 85.8
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.1e-53 213.4 249 73.1
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 1.5e-43 180.6 249 67.9
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 3.8e-42 176.0 249 63.5
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 8.7e-39 164.9 256 62.1
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 8.1e-37 158.3 256 61.3
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 6.2e-29 132.1 249 59.4
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 9.0e-28 128.3 254 51.2
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.5e-27 127.5 253 47.4
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 9.9e-27 124.8 253 51.0
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-25 121.3 257 52.1
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.4e-25 120.9 253 42.3
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 3.2e-25 119.8 86 75.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.8e-23 114.0 86 74.4
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 3.0e-23 113.2 257 57.6
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 3.0e-23 113.2 86 70.9
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 8.7e-23 111.7 85 72.9
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.5e-22 110.9 250 60.8
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.5e-22 110.2 86 72.1
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 1.6e-21 107.5 75 80.0
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.7e-21 106.3 86 67.4
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.7e-21 106.3 86 70.9
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 3.7e-21 106.3 268 51.9
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 4.8e-21 105.9 85 69.4
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 6.2e-21 105.5 85 71.8
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.1e-20 104.8 76 75.0
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.1e-20 103.2 85 68.2
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 3.1e-20 103.2 85 68.2
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.9e-20 102.1 85 65.9
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 9.0e-20 101.7 85 67.1
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 9.0e-20 101.7 85 64.7
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 1.2e-19 101.3 88 65.9
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.2e-19 101.3 88 67.0
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.5e-19 100.9 85 68.2
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.6e-19 100.1 85 68.2
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 5.8e-19 99.0 86 66.3
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.0e-18 98.2 87 66.7
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.3e-18 97.8 254 48.4
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 2.9e-18 96.7 85 67.1
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 3.8e-18 96.3 86 66.3
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.5e-18 95.5 95 62.1
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.5e-18 95.5 87 66.7
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.9e-17 94.0 85 62.4
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.5e-17 93.6 87 60.9
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 2.5e-17 93.6 234 47.9
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.2e-17 93.2 87 64.4
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 5.5e-17 92.4 88 60.2
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 5.5e-17 92.4 83 66.3
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 5.5e-17 92.4 83 66.3
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 7.1e-17 92.0 85 62.4
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 7.1e-17 92.0 254 55.9
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 9.3e-17 91.7 145 57.2
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 9.3e-17 91.7 88 61.4
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 1.2e-16 91.3 142 59.2
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 1.2e-16 91.3 237 49.8
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 2.1e-16 90.5 88 60.2
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.7e-16 90.1 86 60.5
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 2.7e-16 90.1 85 62.4
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 2.7e-16 90.1 142 72.5
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.5e-16 89.7 87 63.2
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 3.5e-16 89.7 71 73.2
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 3.5e-16 89.7 83 65.1
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 4.6e-16 89.4 88 61.4
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 7.9e-16 88.6 88 60.2
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 7.9e-16 88.6 88 60.2
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 7.9e-16 88.6 85 57.6
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 7.9e-16 88.6 78 62.8
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.0e-15 88.2 88 60.2
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 1.3e-15 87.8 87 60.9
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.8e-15 87.4 85 56.5
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 3.0e-15 86.7 88 60.2
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 3.9e-15 86.3 88 59.1
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 5.1e-15 85.9 88 60.2
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 5.1e-15 85.9 84 64.3
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 6.7e-15 85.5 83 61.4
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 6.7e-15 85.5 72 69.4
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 8.7e-15 85.1 88 59.1
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 8.7e-15 85.1 88 59.1
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 8.7e-15 85.1 88 59.1
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 1.1e-14 84.7 83 60.2
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.9e-14 84.0 88 56.8
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.9e-14 84.0 88 56.8
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 4.3e-14 82.8 70 67.1
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 5.7e-14 82.4 85 55.3
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 7.4e-14 82.0 88 61.4
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 7.4e-14 82.0 83 56.6
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 7.4e-14 82.0 83 61.4
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 9.6e-14 81.6 86 57.0
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 1.6e-13 80.9 75 65.3
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 2.1e-13 80.5 72 66.7
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 2.1e-13 80.5 83 60.2
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 2.8e-13 80.1 85 55.3
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 3.7e-13 79.7 86 57.0
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 4.8e-13 79.3 146 62.3
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 1.4e-12 77.8 82 54.9
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 3.1e-12 76.6 69 58.0
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 4.1e-12 76.3 84 56.0
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.2e-11 74.7 76 55.3
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 5.9e-11 72.4 260 31.9
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 5.9e-11 72.4 85 54.1
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 7.6e-11 72.0 87 52.9
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 7.6e-11 72.0 87 52.9
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 1.3e-10 71.2 64 62.5
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.7e-10 70.9 112 43.8
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.7e-10 70.9 60 65.0
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.7e-10 70.9 84 51.2
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 6.5e-10 68.9 79 54.4
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 9.3e-09 65.1 77 50.6
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 9.3e-09 65.1 89 50.6
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 1.2e-08 64.7 85 52.9
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 1.3e-07 61.2 62 54.8
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 3.9e-07 59.7 86 50.0
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 8.7e-07 58.5 86 48.8
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 1.5e-06 57.8 58 53.4
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 3.3e-06 56.6 82 48.8
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 5.7e-06 55.8 112 38.4
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 7.4e-06 55.5 56 64.3
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 9.7e-06 55.1 52 65.4


User provided reference genes

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