Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1022500 Malus domestica HOM05D003390 ORTHO05D004189 9.5e-74 280.0 135 100.0
MD10G1266700 Malus domestica HOM05D003390 ORTHO05D004189 1.2e-57 226.5 121 93.4
MD16G1203400 Malus domestica HOM05D003390 ORTHO05D004189 1.2e-57 226.5 121 93.4
MD05G1290900 Malus domestica HOM05D003390 ORTHO05D004189 8.3e-54 213.8 121 87.6
RcHm_v2.0_Chr5g0013021 Rosa chinensis HOM05D003390 ORTHO05D004189 1.4e-53 213.0 124 84.7
Prupe.4G074800 Prunus persica HOM05D003390 ORTHO05D004189 1.6e-52 209.5 124 83.9
FAN21G1255 Fragaria x ananassa HOM05D003390 ORTHO05D004189 6.0e-52 207.6 124 82.3
FvH4_3g06290 Fragaria vesca HOM05D003390 ORTHO05D004189 7.8e-52 207.2 124 81.5
FAN11G2053 Fragaria x ananassa HOM05D003390 ORTHO05D004189 7.8e-52 207.2 124 81.5
FAN16G0009 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.0e-51 206.8 124 81.5
FAN25G2602 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.3e-51 206.5 124 81.5
TAR626G0692 Trochodendron aralioides HOM05D003390 ORTHO05D004189 1.3e-51 206.5 124 81.5
CiPaw.09G127400 Carya illinoinensis HOM05D003390 ORTHO05D004189 1.7e-51 206.1 124 81.5
QL05p060163 Quercus lobata HOM05D003390 ORTHO05D004189 3.0e-51 205.3 121 82.6
CANSAT35G0642 Cannabis sativa HOM05D003390 ORTHO05D004189 3.9e-51 204.9 121 81.0
MELO3C002711.2 Cucumis melo HOM05D003390 ORTHO05D004189 6.6e-51 204.1 124 79.0
Gohir.A06G198200 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.1e-50 203.4 124 79.0
Gohir.D06G205600 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.1e-50 203.4 124 79.0
Gorai.010G239900 Gossypium raimondii HOM05D003390 ORTHO05D004189 1.1e-50 203.4 124 79.0
Thecc.06G156600 Theobroma cacao HOM05D003390 ORTHO05D004189 1.5e-50 203.0 122 81.1
CiPaw.09G127300 Carya illinoinensis HOM05D003390 ORTHO05D004189 1.9e-50 202.6 121 81.0
Medtr2g028770 Medicago truncatula HOM05D003390 ORTHO05D004189 1.9e-50 202.6 124 80.6
VMungo0540G2227 Vigna mungo HOM05D003390 ORTHO05D004189 3.3e-50 201.8 124 79.8
CsaV3_1G032710 Cucumis sativus L. HOM05D003390 ORTHO05D004189 4.3e-50 201.4 124 78.2
Ciclev10014753m.g Citrus clementina HOM05D003390 ORTHO05D004189 5.6e-50 201.1 121 80.2
Ca_11357_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 7.3e-50 200.7 124 79.0
Psat1g170120 Pisum sativum HOM05D003390 ORTHO05D004189 7.3e-50 200.7 121 81.8
Manes.17G065600 Manihot esculenta HOM05D003390 ORTHO05D004189 1.2e-49 199.9 124 78.2
Phvul.006G132300 Phaseolus vulgaris HOM05D003390 ORTHO05D004189 1.2e-49 199.9 124 79.8
Duzib192G0036 Durio zibethinus HOM05D003390 ORTHO05D004189 2.1e-49 199.1 124 77.4
Cpa.g.sc17.128 Carica papaya HOM05D003390 ORTHO05D004189 2.8e-49 198.7 121 81.0
Cfa000990 Carpinus fangiana HOM05D003390 ORTHO05D004189 2.8e-49 198.7 121 80.2
Aqoxy1G01824 Aquilegia oxysepala HOM05D003390 ORTHO05D004189 3.6e-49 198.4 124 78.2
Glyma.15G125900 Glycine max HOM05D003390 ORTHO05D004189 3.6e-49 198.4 124 79.8
Lalb_Chr18g0057721 Lupinus albus HOM05D003390 ORTHO05D004189 3.6e-49 198.4 134 72.4
TAR386G0005 Trochodendron aralioides HOM05D003390 ORTHO05D004189 4.7e-49 198.0 124 79.0
TAR627G0573 Trochodendron aralioides HOM05D003390 ORTHO05D004189 4.7e-49 198.0 124 79.0
Eucgr.D00339 Eucalyptus grandis HOM05D003390 ORTHO05D004189 1.4e-48 196.4 121 77.7
Lj6g0006873 Lotus japonicus HOM05D003390 ORTHO05D004189 1.4e-48 196.4 121 80.2
THA.LOC104820634 Tarenaya hassleriana HOM05D003390 ORTHO05D004189 1.4e-48 196.4 124 76.6
Nitab4.5_0000206g0100 Nicotiana tabacum HOM05D003390 ORTHO05D004189 2.3e-48 195.7 121 79.3
Nitab4.5_0001826g0010 Nicotiana tabacum HOM05D003390 ORTHO05D004189 2.3e-48 195.7 121 79.3
BcaB03g12182 Brassica carinata HOM05D003390 ORTHO05D004189 4.0e-48 194.9 124 73.4
Sed0005552 Sechium edule HOM05D003390 ORTHO05D004189 4.0e-48 194.9 124 77.4
Aa31LG6G5840 Aethionema arabicum HOM05D003390 ORTHO05D004189 5.2e-48 194.5 124 73.4
BcaC01g00142 Brassica carinata HOM05D003390 ORTHO05D004189 5.2e-48 194.5 124 73.4
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 5.2e-48 194.5 124 73.4
C03p76240 Brassica napus HOM05D003390 ORTHO05D004189 5.2e-48 194.5 124 73.4
BolC3t19880H Brassica oleracea HOM05D003390 ORTHO05D004189 5.2e-48 194.5 124 73.4
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 5.2e-48 194.5 124 73.4
TPR.G17505 Trifolium pratense HOM05D003390 ORTHO05D004189 8.9e-48 193.7 111 83.8
Sp1g25730 Schrenkiella parvula HOM05D003390 ORTHO05D004189 1.5e-47 193.0 124 72.6
Atru.chr10.1372 Acer truncatum HOM05D003390 ORTHO05D004189 2.6e-47 192.2 126 77.8
AL1G43660 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 2.6e-47 192.2 121 74.4
Carub.0001s2807 Capsella rubella HOM05D003390 ORTHO05D004189 2.6e-47 192.2 124 72.6
TWI09G1133 Tripterygium wilfordii HOM05D003390 ORTHO05D004189 2.6e-47 192.2 124 78.2
arahy.Tifrunner.gnm1.ann1.0JHG5Q Arachis hypogaea HOM05D003390 ORTHO05D004189 3.4e-47 191.8 121 75.2
arahy.Tifrunner.gnm1.ann1.VAF4MI Arachis hypogaea HOM05D003390 ORTHO05D004189 3.4e-47 191.8 121 75.2
Cc09_g09610 Coffea canephora HOM05D003390 ORTHO05D004189 3.4e-47 191.8 124 75.0
TPR.G17499 Trifolium pratense HOM05D003390 ORTHO05D004189 3.4e-47 191.8 124 77.4
CARHR029610 Cardamine hirsuta HOM05D003390 ORTHO05D004189 4.4e-47 191.4 124 72.6
AT1G29820 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 5.8e-47 191.0 121 73.6
Migut.M00950 Erythranthe guttata HOM05D003390 ORTHO05D004189 5.8e-47 191.0 124 75.0
Thhalv10007315m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 5.8e-47 191.0 124 71.8
LjContig00049g0028197 Lotus japonicus HOM05D003390 ORTHO05D004189 5.8e-47 191.0 121 76.0
SGA_v2.0_scaffold333G49014 Striga asiatica HOM05D003390 ORTHO05D004189 5.8e-47 191.0 124 74.2
TPR.G12521 Trifolium pratense HOM05D003390 ORTHO05D004189 7.5e-47 190.7 124 75.0
EL10Ac8g19781 Beta vulgaris HOM05D003390 ORTHO05D004189 9.8e-47 190.3 121 76.0
Haze_05526 Corylus avellana HOM05D003390 ORTHO05D004189 9.8e-47 190.3 111 82.0
Lj1A1183G65 Lonicera japonica HOM05D003390 ORTHO05D004189 1.3e-46 189.9 124 75.0
Medtr5g091570 Medicago truncatula HOM05D003390 ORTHO05D004189 1.3e-46 189.9 124 73.4
Sabra16G0232300 Salix brachista HOM05D003390 ORTHO05D004189 2.2e-46 189.1 121 76.9
Dinv30696 Davidia involucrata HOM05D003390 ORTHO05D004189 2.9e-46 188.7 121 76.9
QL08p044424 Quercus lobata HOM05D003390 ORTHO05D004189 3.7e-46 188.3 124 74.2
Sc05g0006540 Simmondsia chinensis HOM05D003390 ORTHO05D004189 3.7e-46 188.3 121 76.0
PGSC0003DMG400003171 Solanum tuberosum HOM05D003390 ORTHO05D004189 3.7e-46 188.3 121 75.2
Psat2g016080 Pisum sativum HOM05D003390 ORTHO05D004189 4.9e-46 188.0 121 74.4
AT1G29830 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 6.4e-46 187.6 124 71.8
Actinidia39555 Actinidia chinensis HOM05D003390 ORTHO05D004189 8.3e-46 187.2 121 76.0
PSO135G0210 Papaver somniferum HOM05D003390 ORTHO05D004189 8.3e-46 187.2 124 73.4
Ca_06279_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 1.1e-45 186.8 121 73.6
Ca_30614_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 1.1e-45 186.8 121 73.6
Rhsim06G0115300 Rhododendron simsii HOM05D003390 ORTHO05D004189 1.1e-45 186.8 121 73.6
AUR62027570 Chenopodium quinoa HOM05D003390 ORTHO05D004189 1.4e-45 186.4 124 70.2
COL.COLO4_08451 Corchorus olitorius HOM05D003390 ORTHO05D004189 1.9e-45 186.0 124 72.6
ECA232G3556 Erigeron canadensis HOM05D003390 ORTHO05D004189 2.4e-45 185.7 124 72.6
Lalb_Chr10g0106641 Lupinus albus HOM05D003390 ORTHO05D004189 2.4e-45 185.7 124 74.2
Sopen02g005990 Solanum pennellii HOM05D003390 ORTHO05D004189 2.4e-45 185.7 121 74.4
DCAR_013317 Daucus carota HOM05D003390 ORTHO05D004189 3.2e-45 185.3 124 71.0
Oeu001052.1 Olea europaea HOM05D003390 ORTHO05D004189 3.2e-45 185.3 108 80.6
arahy.Tifrunner.gnm1.ann1.QBP2NG Arachis hypogaea HOM05D003390 ORTHO05D004189 4.1e-45 184.9 124 71.8
arahy.Tifrunner.gnm1.ann1.WT2YK3 Arachis hypogaea HOM05D003390 ORTHO05D004189 4.1e-45 184.9 124 71.8
Ciclev10031790m.g Citrus clementina HOM05D003390 ORTHO05D004189 4.1e-45 184.9 124 71.0
Potri.001G353000 Populus trichocarpa HOM05D003390 ORTHO05D004189 4.1e-45 184.9 121 74.4
CARHR138010 Cardamine hirsuta HOM05D003390 ORTHO05D004189 5.4e-45 184.5 121 73.6
AUR62035789 Chenopodium quinoa HOM05D003390 ORTHO05D004189 5.4e-45 184.5 124 69.4
HanXRQChr05g0147821 Helianthus annuus HOM05D003390 ORTHO05D004189 5.4e-45 184.5 124 71.8
Ah.09g232910 Amaranthus hybridus HOM05D003390 ORTHO05D004189 7.1e-45 184.1 121 72.7
MSTRG.7463 Avicennia marina HOM05D003390 ORTHO05D004189 7.1e-45 184.1 124 71.0
Cc05_g09550 Coffea canephora HOM05D003390 ORTHO05D004189 7.1e-45 184.1 124 72.6
Rhsim12G0071900 Rhododendron simsii HOM05D003390 ORTHO05D004189 7.1e-45 184.1 121 76.0
Lj2A310T45 Lonicera japonica HOM05D003390 ORTHO05D004189 9.2e-45 183.7 121 73.6
MBI07_g07829_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 9.2e-45 183.7 121 71.9
Aa31LG1G24700 Aethionema arabicum HOM05D003390 ORTHO05D004189 1.2e-44 183.3 124 72.6
unitig_748.g7439 Utricularia gibba HOM05D003390 ORTHO05D004189 1.2e-44 183.3 124 72.6
Gohir.A09G007100 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.6e-44 183.0 124 72.6
Gohir.D09G006300 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.6e-44 183.0 124 72.6
Gorai.006G007900 Gossypium raimondii HOM05D003390 ORTHO05D004189 1.6e-44 183.0 124 72.6
SalBow7G4851 Salvia bowleyana HOM05D003390 ORTHO05D004189 1.6e-44 183.0 124 70.2
GSVIVG01021390001 Vitis vinifera HOM05D003390 ORTHO05D004189 1.6e-44 183.0 121 75.2
CAN.G2018.1 Capsicum annuum HOM05D003390 ORTHO05D004189 2.1e-44 182.6 124 69.4
DCAR_005073 Daucus carota HOM05D003390 ORTHO05D004189 2.1e-44 182.6 121 73.6
Thhalv10016539m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 2.1e-44 182.6 121 73.6
Nitab4.5_0002209g0030 Nicotiana tabacum HOM05D003390 ORTHO05D004189 2.1e-44 182.6 121 71.1
Eucgr.A01981 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.7e-44 182.2 121 71.9
Migut.H02104 Erythranthe guttata HOM05D003390 ORTHO05D004189 3.5e-44 181.8 121 71.9
Peaxi162Scf00035g02617 Petunia axillaris HOM05D003390 ORTHO05D004189 3.5e-44 181.8 124 69.4
BNapus_Darmor_BZH_scaffold_64p00180 Brassica napus HOM05D003390 ORTHO05D004189 4.6e-44 181.4 121 72.7
BraA04t18699Z Brassica rapa HOM05D003390 ORTHO05D004189 4.6e-44 181.4 121 72.7
BcaB06g29273 Brassica carinata HOM05D003390 ORTHO05D004189 6.0e-44 181.0 121 71.9
BcaC02g07214 Brassica carinata HOM05D003390 ORTHO05D004189 6.0e-44 181.0 121 71.9
BolC4t28499H Brassica oleracea HOM05D003390 ORTHO05D004189 6.0e-44 181.0 121 71.9
Carub.0004s2542 Capsella rubella HOM05D003390 ORTHO05D004189 6.0e-44 181.0 121 72.7
Thecc.01G163000 Theobroma cacao HOM05D003390 ORTHO05D004189 6.0e-44 181.0 124 70.2
Actinidia07674 Actinidia chinensis HOM05D003390 ORTHO05D004189 7.8e-44 180.6 118 75.4
AT2G42950 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 7.8e-44 180.6 121 73.6
Sopen10g003650 Solanum pennellii HOM05D003390 ORTHO05D004189 7.8e-44 180.6 124 68.5
Sp4g25080 Schrenkiella parvula HOM05D003390 ORTHO05D004189 1.0e-43 180.3 121 71.9
Solyc10g007740.3 Solanum lycopersicum HOM05D003390 ORTHO05D004189 1.3e-43 179.9 124 68.5
PGSC0003DMG400021242 Solanum tuberosum HOM05D003390 ORTHO05D004189 1.3e-43 179.9 124 68.5
ATR1131G058 Amborella trichopoda HOM05D003390 ORTHO05D004189 1.7e-43 179.5 121 71.9
AL4G41580 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 2.3e-43 179.1 121 71.9
Lsat_1_v5_gn_0_8061 Lactuca sativa HOM05D003390 ORTHO05D004189 2.3e-43 179.1 124 71.0
C04p69990 Brassica napus HOM05D003390 ORTHO05D004189 3.0e-43 178.7 121 71.1
Haze_13511 Corylus avellana HOM05D003390 ORTHO05D004189 3.9e-43 178.3 111 76.6
Nn4g26479 Nelumbo nucifera HOM05D003390 ORTHO05D004189 5.1e-43 177.9 124 71.0
CDE08G1393 Ceratophyllum demersum HOM05D003390 ORTHO05D004189 6.6e-43 177.6 116 72.4
FvH4_6g38330 Fragaria vesca HOM05D003390 ORTHO05D004189 8.6e-43 177.2 124 70.2
Prupe.3G173900 Prunus persica HOM05D003390 ORTHO05D004189 1.5e-42 176.4 126 69.0
Zm00001eb359660 Zea mays HOM05D003390 ORTHO05D004189 1.5e-42 176.4 124 69.4
HanXRQChr16g0525801 Helianthus annuus HOM05D003390 ORTHO05D004189 1.9e-42 176.0 121 69.4
Os01g0664100 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 2.5e-42 175.6 124 68.5
FAN14G5098 Fragaria x ananassa HOM05D003390 ORTHO05D004189 7.3e-42 174.1 122 70.5
Lsat_1_v5_gn_4_29721 Lactuca sativa HOM05D003390 ORTHO05D004189 9.5e-42 173.7 121 70.2
Lj1A614G6 Lonicera japonica HOM05D003390 ORTHO05D004189 9.5e-42 173.7 124 71.0
MD17G1138500 Malus domestica HOM05D003390 ORTHO05D004189 9.5e-42 173.7 126 67.5
ECA234G1186 Erigeron canadensis HOM05D003390 ORTHO05D004189 1.2e-41 173.3 121 68.6
Cpa.g.sc50.94 Carica papaya HOM05D003390 ORTHO05D004189 1.6e-41 172.9 108 75.9
SalBow8G0013 Salvia bowleyana HOM05D003390 ORTHO05D002303 4.7e-41 171.4 149 61.7
vmacro12466 Vaccinium macrocarpon HOM05D003390 ORTHO05D004189 5.2e-40 167.9 124 67.7
PGR031G1555 Punica granatum HOM05D003390 ORTHO05D004189 7.6e-39 164.1 101 80.2
FAN19G1589 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.7e-38 162.9 134 64.2
AagrBONN_evm.TU.Sc2ySwM_228.3525 Anthoceros agrestis HOM05D003390 ORTHO05D004189 2.2e-38 162.5 121 64.5
FvH4_1g24850 Fragaria vesca HOM05D003390 ORTHO05D004189 6.4e-38 161.0 134 64.2
Mapoly0130s0010 Marchantia polymorpha HOM05D003390 ORTHO05D004189 6.4e-38 161.0 121 62.8
Os01g0601000 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 8.4e-38 160.6 124 64.5
Hund21490 Selenicereus undatus HOM05D003390 ORTHO05D004189 1.9e-37 159.5 164 52.4
FAN09G2932 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.7e-36 155.6 111 68.5
MBI07_g35048_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 4.6e-36 154.8 101 72.3
FAN26G2057 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.3e-35 153.3 122 68.0
Peaxi162Scf00121g00231 Petunia axillaris HOM05D003390 ORTHO05D004189 2.3e-35 152.5 100 73.0
HPP92_008031 Vanilla planifolia HOM05D003390 ORTHO05D004189 1.1e-34 150.2 102 70.6
Oeu020929.2 Olea europaea HOM05D003390 ORTHO05D004189 1.5e-34 149.8 174 50.0
Pp3c9_16960 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.5e-34 149.8 121 57.9
Pp3c9_12460 Physcomitrium patens HOM05D003390 ORTHO05D004189 3.3e-34 148.7 121 57.0
PGR042G1945 Punica granatum HOM05D003390 ORTHO05D004189 4.3e-34 148.3 101 68.3
Eucgr.A01987 Eucalyptus grandis HOM05D003390 ORTHO05D004189 7.3e-34 147.5 142 55.6
Glyma.02G285600 Glycine max HOM05D003390 ORTHO05D004189 6.2e-33 144.4 101 68.3
SGA_v2.0_scaffold4G02117 Striga asiatica HOM05D003390 ORTHO05D004189 1.8e-32 142.9 107 64.5
Pp3c15_4880 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.2e-31 140.2 121 53.7
SEGI_06697 Sequoiadendron giganteum HOM05D003390 ORTHO05D004189 1.3e-30 136.7 100 67.0
PSO541G3465 Papaver somniferum HOM05D003390 ORTHO05D004189 2.1e-28 129.4 112 59.8
Nitab4.5_0003104g0070 Nicotiana tabacum HOM05D003390 ORTHO05D004189 1.2e-20 103.6 73 67.1
ClCG03G007130 Citrullus lanatus HOM05D003390 ORTHO05D004189 7.9e-20 100.9 55 83.6
TPR.G7093 Trifolium pratense HOM05D003390 ORTHO05D004189 7.9e-20 100.9 124 48.4
RcHm_v2.0_Chr2g0151641 Rosa chinensis HOM05D003390 ORTHO05D004189 3.9e-19 98.6 73 65.8
vmacro15692 Vaccinium macrocarpon HOM05D000244 ORTHO05D000179 2.0e-15 86.3 88 53.4
Duzib187G0551 Durio zibethinus HOM05D003390 ORTHO05D018142 1.1e-08 63.9 84 44.0
Eucgr.A01984 Eucalyptus grandis HOM05D003390 ORTHO05D004189 5.8e-07 58.2 49 53.1
COL.COLO4_37436 Corchorus olitorius HOM05D003390 ORTHO05D155236 6.5e-06 54.7 27 81.5


User provided reference genes

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