Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1014600 Malus domestica HOM05D006358 ORTHO05D008185 3.5e-58 228.0 110 100.0
MD11G1015800 Malus domestica HOM05D006358 ORTHO05D008185 9.8e-45 183.3 128 73.4
Prupe.6G013900 Prunus persica HOM05D006358 ORTHO05D008185 3.5e-42 174.9 128 67.2
FvH4_3g44350 Fragaria vesca HOM05D006358 ORTHO05D008185 4.1e-35 151.4 128 59.4
FAN21G1333 Fragaria x ananassa HOM05D000259 ORTHO05D008185 4.1e-35 151.4 128 59.4
RcHm_v2.0_Chr5g0080731 Rosa chinensis HOM05D006358 ORTHO05D008185 4.1e-35 151.4 129 58.9
CANSAT54G1685 Cannabis sativa HOM05D006358 ORTHO05D008185 5.4e-35 151.0 129 57.4
QL01p009947 Quercus lobata HOM05D006358 ORTHO05D008185 9.2e-35 150.2 128 57.0
vmacro21759 Vaccinium macrocarpon HOM05D006358 ORTHO05D008185 1.3e-33 146.4 127 55.1
EL10Ac4g10334 Beta vulgaris HOM05D006358 ORTHO05D008185 1.7e-33 146.0 121 57.0
CiPaw.14G129700 Carya illinoinensis HOM05D006358 ORTHO05D008185 1.7e-33 146.0 126 54.8
VMungo0720G2736 Vigna mungo HOM05D006358 ORTHO05D008185 2.3e-33 145.6 122 54.1
Ciclev10015496m.g Citrus clementina HOM05D006358 ORTHO05D008185 8.6e-33 143.7 124 55.6
Cfa009639 Carpinus fangiana HOM05D006358 ORTHO05D008185 1.1e-32 143.3 125 54.4
Sabra01G0008700 Salix brachista HOM05D006358 ORTHO05D008185 1.5e-32 142.9 124 56.5
Lalb_Chr02g0144221 Lupinus albus HOM05D006358 ORTHO05D008185 1.9e-32 142.5 119 54.6
Potri.001G011700 Populus trichocarpa HOM05D006358 ORTHO05D008185 3.3e-32 141.7 124 56.5
Phvul.007G005400 Phaseolus vulgaris HOM05D006358 ORTHO05D008185 5.6e-32 141.0 121 53.7
Actinidia01838 Actinidia chinensis HOM05D006358 ORTHO05D008185 1.2e-31 139.8 121 53.7
Rhsim13G0227500 Rhododendron simsii HOM05D006358 ORTHO05D009383 1.6e-31 139.4 125 52.0
arahy.Tifrunner.gnm1.ann1.TN3NK4 Arachis hypogaea HOM05D006358 ORTHO05D008185 2.1e-31 139.0 118 54.2
Eucgr.B02608 Eucalyptus grandis HOM05D006358 ORTHO05D008185 2.1e-31 139.0 123 52.8
Glyma.10G294800 Glycine max HOM05D006358 ORTHO05D008185 2.1e-31 139.0 122 51.6
Manes.03G089800 Manihot esculenta HOM05D006358 ORTHO05D008185 2.1e-31 139.0 124 53.2
TAR633G2634 Trochodendron aralioides HOM05D006358 ORTHO05D008185 2.1e-31 139.0 127 51.2
Hma1.2p1_0050F.1_g029070 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 6.2e-31 137.5 127 51.2
Glyma.20G244500 Glycine max HOM05D006358 ORTHO05D008185 1.4e-30 136.3 122 51.6
Cc01_g03170 Coffea canephora HOM05D006358 ORTHO05D008185 2.3e-30 135.6 124 50.8
PGSC0003DMG400032149 Solanum tuberosum HOM05D006358 ORTHO05D008185 3.1e-30 135.2 123 51.2
Peaxi162Scf00192g00019 Petunia axillaris HOM05D006358 ORTHO05D008185 4.0e-30 134.8 130 50.0
Lj5g0002595 Lotus japonicus HOM05D006358 ORTHO05D008185 5.2e-30 134.4 122 50.0
Ca_11387_v3 Cicer arietinum L. HOM05D006358 ORTHO05D008185 6.8e-30 134.0 122 50.8
PSO384G4606 Papaver somniferum HOM05D006358 ORTHO05D008185 1.2e-29 133.3 126 50.0
PGR119G1893 Punica granatum HOM05D006358 ORTHO05D008185 1.2e-29 133.3 122 52.5
TWI34G0094 Tripterygium wilfordii HOM05D006358 ORTHO05D008185 1.5e-29 132.9 120 54.2
Duzib150G0556 Durio zibethinus HOM05D006358 ORTHO05D008185 2.6e-29 132.1 120 51.7
PSO339G4609 Papaver somniferum HOM05D006358 ORTHO05D008185 2.6e-29 132.1 123 51.2
Thecc.09G216800 Theobroma cacao HOM05D006358 ORTHO05D008185 3.4e-29 131.7 120 50.0
CAN.G140.8 Capsicum annuum HOM05D006358 ORTHO05D008185 5.8e-29 131.0 124 50.8
Solyc01g006330.4 Solanum lycopersicum HOM05D006358 ORTHO05D008185 7.5e-29 130.6 123 49.6
Sopen01g002330 Solanum pennellii HOM05D006358 ORTHO05D008185 9.9e-29 130.2 123 49.6
DCAR_024375 Daucus carota HOM05D006358 ORTHO05D008185 1.7e-28 129.4 127 48.0
Nitab4.5_0005041g0010 Nicotiana tabacum HOM05D006358 ORTHO05D008185 2.2e-28 129.0 124 47.6
Nitab4.5_0003436g0040 Nicotiana tabacum HOM05D006358 ORTHO05D008185 2.9e-28 128.6 124 48.4
TPR.G10386 Trifolium pratense HOM05D006358 ORTHO05D008185 2.9e-28 128.6 122 51.6
Haze_23007 Corylus avellana HOM05D006358 ORTHO05D008185 3.7e-28 128.3 134 47.8
COL.COLO4_10429 Corchorus olitorius HOM05D006358 ORTHO05D008185 8.3e-28 127.1 119 48.7
GSVIVG01025367001 Vitis vinifera HOM05D006358 ORTHO05D008185 8.3e-28 127.1 118 51.7
Aqoxy1G00024 Aquilegia oxysepala HOM05D006358 ORTHO05D008185 1.1e-27 126.7 122 47.5
Sc09g0000330 Simmondsia chinensis HOM05D006358 ORTHO05D008185 1.1e-27 126.7 117 47.0
ECA248G2469 Erigeron canadensis HOM05D006358 ORTHO05D008185 1.4e-27 126.3 121 49.6
SGA_v2.0_scaffold1G00759 Striga asiatica HOM05D006358 ORTHO05D008185 1.4e-27 126.3 121 48.8
HanXRQChr11g0345451 Helianthus annuus HOM05D006358 ORTHO05D008185 2.4e-27 125.6 118 50.8
Medtr1g116320 Medicago truncatula HOM05D006358 ORTHO05D008185 2.4e-27 125.6 120 50.0
Psat6g240320 Pisum sativum HOM05D003840 ORTHO05D004565 2.4e-27 125.6 120 48.3
THA.LOC104810430 Tarenaya hassleriana HOM05D006358 ORTHO05D008185 3.2e-27 125.2 119 52.1
Gorai.004G092800 Gossypium raimondii HOM05D006358 ORTHO05D008185 4.1e-27 124.8 121 47.9
Ah.06g193120 Amaranthus hybridus HOM05D000044 ORTHO05D000051 9.2e-27 123.6 91 58.2
Oeu058541.2 Olea europaea HOM05D006358 ORTHO05D008185 1.2e-26 123.2 116 50.0
Gohir.A08G078500 Gossypium hirsutum HOM05D006358 ORTHO05D008185 4.6e-26 121.3 121 46.3
Nn2g15694 Nelumbo nucifera HOM05D006358 ORTHO05D008185 1.0e-25 120.2 97 56.7
BraA06t23476Z Brassica rapa HOM05D006358 ORTHO05D008185 1.3e-25 119.8 118 48.3
Migut.D00538 Erythranthe guttata HOM05D006358 ORTHO05D008185 1.3e-25 119.8 117 48.7
Hma1.2p1_0238F.1_g099790 Hydrangea macrophylla HOM05D006358 ORTHO05D008185 3.0e-25 118.6 93 59.1
Sp1g37840 Schrenkiella parvula HOM05D006358 ORTHO05D008185 3.0e-25 118.6 118 46.6
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 3.9e-25 118.2 118 47.5
Carub.0001s4002 Capsella rubella HOM05D006358 ORTHO05D008185 3.9e-25 118.2 118 48.3
CsaV3_4G023700 Cucumis sativus L. HOM05D006358 ORTHO05D008185 3.9e-25 118.2 117 47.9
A06p02670 Brassica napus HOM05D006358 ORTHO05D008185 5.1e-25 117.9 118 46.6
AT1G51110 Arabidopsis thaliana HOM05D006358 ORTHO05D008185 8.6e-25 117.1 116 48.3
BcaB07g33557 Brassica carinata HOM05D006358 ORTHO05D008185 8.6e-25 117.1 118 46.6
unitig_0.g179 Utricularia gibba HOM05D006358 ORTHO05D008185 1.5e-24 116.3 120 45.0
AL1G58910 Arabidopsis lyrata HOM05D006358 ORTHO05D008185 3.3e-24 115.2 118 46.6
ClCG02G023710 Citrullus lanatus HOM05D006358 ORTHO05D008185 3.3e-24 115.2 123 46.3
BcaC08g43281 Brassica carinata HOM05D006358 ORTHO05D008185 4.3e-24 114.8 118 45.8
C06p06310 Brassica napus HOM05D006358 ORTHO05D008185 4.3e-24 114.8 118 45.8
BolC6t35740H Brassica oleracea HOM05D006358 ORTHO05D008185 4.3e-24 114.8 118 45.8
Thhalv10011532m.g Eutrema salsugineum HOM05D006358 ORTHO05D008185 5.6e-24 114.4 118 45.8
CARHR041130 Cardamine hirsuta HOM05D006358 ORTHO05D008185 4.7e-23 111.3 116 45.7
Lj2A674T44 Lonicera japonica HOM05D006358 ORTHO05D008185 1.4e-22 109.8 97 55.7
FAN11G2908 Fragaria x ananassa HOM05D000259 ORTHO05D008185 2.4e-22 109.0 104 53.8
FAN16G0252 Fragaria x ananassa HOM05D006358 ORTHO05D008185 3.1e-22 108.6 104 54.8
Hund07562 Selenicereus undatus HOM05D006358 ORTHO05D008185 6.8e-22 107.5 94 52.1
FAN25G3418 Fragaria x ananassa HOM05D000259 ORTHO05D008185 1.5e-21 106.3 104 52.9
AUR62000042 Chenopodium quinoa HOM05D006358 ORTHO05D008185 5.8e-21 104.4 98 51.0
AUR62019212 Chenopodium quinoa HOM05D006358 ORTHO05D008185 1.7e-20 102.8 98 50.0
Cpa.g.sc1127.2 Carica papaya HOM05D006358 ORTHO05D008185 7.1e-19 97.4 97 48.5
MELO3C014648.2 Cucumis melo HOM05D006358 ORTHO05D008185 3.0e-17 92.0 96 45.8
BcaC08g43283 Brassica carinata HOM05D006358 ORTHO05D008185 1.5e-16 89.7 97 45.4
BolC6t35742H Brassica oleracea HOM05D006358 ORTHO05D008185 1.5e-16 89.7 97 45.4
CSS0022118 Camellia sinensis var. sinensis HOM05D006358 ORTHO05D008185 4.3e-16 88.2 66 57.6
CDE04G2070 Ceratophyllum demersum HOM05D006358 ORTHO05D008185 4.3e-16 88.2 113 38.1
C06p06330 Brassica napus HOM05D000466 ORTHO05D000331 1.8e-14 82.8 126 35.7
Lsat_1_v5_gn_1_68460 Lactuca sativa HOM05D006358 ORTHO05D008185 4.0e-14 81.6 88 46.6
ATR0807G171 Amborella trichopoda HOM05D006358 ORTHO05D008185 5.4e-11 71.2 118 26.3
Zm00001eb320130 Zea mays HOM05D006358 ORTHO05D008185 2.1e-07 59.3 113 30.1
Dinv36328 Davidia involucrata HOM05D006358 ORTHO05D008185 5.3e-06 54.7 62 45.2


User provided reference genes

Program Settings