Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.8e-276 955.3 483 100.0
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.7e-264 914.8 483 95.7
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 2.6e-235 818.5 498 84.5
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 8.5e-218 760.4 488 79.1
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 8.6e-210 733.8 483 77.0
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.6e-203 713.0 471 76.6
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 1.4e-191 673.3 492 68.9
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.3e-189 664.1 482 71.2
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.2e-187 660.2 495 68.1
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-183 647.1 487 67.8
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 3.1e-183 645.6 490 68.8
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 6.8e-183 644.4 497 67.2
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.0e-182 642.9 487 67.1
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.7e-181 639.8 501 65.7
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 1.4e-180 636.7 490 67.6
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.1e-180 634.4 429 76.2
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.1e-179 632.9 488 67.6
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 4.6e-179 631.7 505 64.4
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 2.5e-177 625.9 336 94.9
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 9.5e-177 624.0 497 64.8
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.1e-176 622.9 498 65.1
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 3.6e-176 622.1 501 65.3
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 8.1e-176 620.9 493 65.7
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 3.1e-175 619.0 496 65.3
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 4.0e-175 618.6 490 66.3
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 8.9e-175 617.5 493 65.3
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 5.8e-174 614.8 480 66.2
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.4e-172 609.4 490 65.3
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 5.4e-172 608.2 495 63.2
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 8.7e-170 600.9 485 63.7
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.1e-169 600.5 483 65.6
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.5e-169 599.4 485 65.6
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.2e-168 597.0 497 63.0
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.6e-168 596.7 493 63.3
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 1.4e-167 593.6 486 61.5
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 4.0e-167 592.0 500 61.6
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 5.2e-167 591.7 480 64.4
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.2e-166 590.5 485 63.5
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 1.2e-166 590.5 489 61.8
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 7.6e-166 587.8 492 60.6
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 7.6e-166 587.8 486 61.9
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 7.6e-166 587.8 487 62.0
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 7.6e-166 587.8 488 61.1
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 9.9e-166 587.4 490 61.6
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.3e-165 587.0 501 61.5
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.3e-165 587.0 490 60.4
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 2.2e-165 586.3 480 63.5
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.1e-164 583.9 498 62.0
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.9e-164 583.2 495 61.4
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.9e-164 583.2 494 60.9
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 2.4e-164 582.8 495 61.4
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 7.1e-164 581.3 495 60.8
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 7.1e-164 581.3 495 60.8
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.2e-163 580.5 497 60.0
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.6e-163 580.1 498 60.2
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 6.0e-163 578.2 486 60.9
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 7.8e-163 577.8 504 59.7
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.3e-162 577.0 508 59.4
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 6.6e-162 574.7 485 59.6
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 6.6e-162 574.7 485 59.6
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 8.7e-162 574.3 505 59.8
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 8.7e-162 574.3 488 61.1
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 1.9e-161 573.2 486 61.1
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.8e-160 569.3 504 59.5
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 4.8e-160 568.5 490 61.4
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 6.2e-160 568.2 485 59.8
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.2e-158 563.9 504 58.9
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.5e-158 563.5 494 58.7
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.5e-158 563.5 486 61.1
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 7.6e-158 561.2 491 60.9
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.7e-157 560.1 561 56.3
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.9e-157 559.3 531 56.5
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 8.4e-157 557.8 505 59.0
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 3.2e-156 555.8 486 60.9
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 3.2e-156 555.8 486 60.9
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 7.9e-155 551.2 505 58.2
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.3e-154 550.4 382 76.7
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.5e-153 547.0 488 59.6
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.3e-153 545.8 484 60.3
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 8.1e-152 541.2 444 63.7
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 1.1e-151 540.8 439 66.1
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 4.0e-151 538.9 386 71.5
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 6.9e-151 538.1 438 64.2
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-150 537.3 505 59.0
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.6e-147 525.4 475 58.3
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.6e-147 525.4 480 57.3
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.9e-145 520.0 421 64.6
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 4.8e-144 515.4 436 62.2
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 5.8e-142 508.4 460 58.3
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 4.2e-140 502.3 396 66.7
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 4.2e-140 502.3 420 59.8
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 7.1e-140 501.5 493 56.6
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 7.9e-139 498.0 484 55.2
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 4.1e-135 485.7 388 64.4
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 2.2e-133 479.9 610 51.0
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 2.5e-132 476.5 481 54.1
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 6.3e-128 461.8 463 56.2
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 6.7e-122 441.8 392 58.7
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.7e-121 438.7 472 53.8
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 3.1e-119 433.0 359 62.4
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.5e-118 430.6 355 61.7
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 2.0e-118 430.3 486 47.3
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 9.4e-116 421.4 380 57.1
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 6.7e-114 415.2 473 49.9
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 9.7e-113 411.4 497 48.1
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 4.5e-110 402.5 476 52.1
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 5.5e-108 395.6 338 61.8
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 1.6e-107 394.0 430 51.2
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 2.3e-106 390.2 583 42.9
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.5e-105 387.5 335 57.9
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 4.1e-103 379.4 331 58.6
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 8.5e-101 371.7 477 45.1
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.8e-98 361.7 366 56.3
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.2e-96 357.1 271 67.9
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 7.0e-95 352.1 384 54.2
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 5.0e-93 345.9 289 60.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.9e-92 344.0 258 67.4
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.4e-87 327.8 283 57.2
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.7e-86 323.6 367 49.0
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.9e-84 317.4 240 67.5
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.7e-80 304.3 227 68.7
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-76 290.4 243 64.2
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 9.5e-76 288.5 243 58.8
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-75 287.7 361 48.2
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 7.1e-71 272.3 216 65.3
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.1e-69 266.2 168 74.4
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 6.8e-66 255.8 188 65.4
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 6.8e-66 255.8 214 60.3
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.6e-61 239.2 366 42.1
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-60 238.4 207 61.8
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 6.2e-59 232.6 175 69.7
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 8.1e-59 232.3 260 55.0
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 9.3e-55 218.8 407 38.1
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 7.8e-54 215.7 486 33.7
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 1.5e-52 211.5 200 52.0
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 2.4e-50 204.1 206 58.7
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 3.0e-45 187.2 121 72.7
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.4e-42 178.3 198 49.0
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 6.4e-40 169.5 157 56.1
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.7e-38 164.1 177 53.1
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 6.2e-35 152.9 429 29.6
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 2.9e-32 144.1 150 51.3
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.9e-31 141.4 104 68.3
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 4.6e-30 136.7 522 26.1
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.7e-27 127.1 119 59.7
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 3.1e-26 124.0 95 67.4
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 6.9e-26 122.9 112 60.7
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-25 121.3 112 59.8
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 4.5e-25 120.2 112 58.9
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-19 100.9 91 47.3
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-18 99.0 77 62.3
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-17 95.5 64 73.4
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 1.9e-15 88.2 90 46.7
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.1e-14 83.2 85 54.1
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 7.9e-14 82.8 64 62.5
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.7e-13 79.7 74 54.1
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 8.8e-13 79.3 54 70.4
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-12 78.6 81 51.9
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 7.4e-12 76.3 82 52.4
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.3e-11 73.2 78 52.6
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.8e-08 63.9 38 78.9
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 5.0e-08 63.5 101 44.6


User provided reference genes

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