Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.6e-47 192.6 108 100.0
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 7.4e-37 157.1 104 84.6
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 3.4e-26 121.7 103 71.8
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 2.4e-19 99.0 73 76.7
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 2.4e-19 99.0 78 74.4
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 3.1e-19 98.6 70 75.7
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 4.1e-19 98.2 81 70.4
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 9.1e-19 97.1 70 80.0
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 1.5e-18 96.3 89 65.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.0e-18 95.9 70 78.6
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.4e-18 95.1 77 71.4
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 7.7e-18 94.0 91 63.7
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.0e-17 93.6 73 74.0
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 1.3e-17 93.2 73 69.9
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 1.3e-17 93.2 98 65.3
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.7e-17 92.8 69 73.9
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.7e-17 92.8 74 71.6
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 2.2e-17 92.4 70 72.9
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.2e-17 92.4 88 60.2
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.9e-17 92.0 98 61.2
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 3.8e-17 91.7 72 73.6
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.8e-17 91.7 91 61.5
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 5.0e-17 91.3 66 75.8
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 5.0e-17 91.3 76 67.1
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 6.5e-17 90.9 97 63.9
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 8.5e-17 90.5 79 67.1
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 1.1e-16 90.1 77 68.8
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.1e-16 90.1 74 68.9
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 1.4e-16 89.7 83 61.4
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.9e-16 89.4 95 58.9
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 1.9e-16 89.4 70 71.4
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.9e-16 89.4 67 73.1
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 2.5e-16 89.0 71 73.2
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.2e-16 88.6 94 58.5
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 4.2e-16 88.2 94 58.5
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 4.2e-16 88.2 78 64.1
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 5.5e-16 87.8 78 66.7
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 5.5e-16 87.8 71 69.0
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 7.2e-16 87.4 72 68.1
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 9.4e-16 87.0 87 59.8
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.2e-15 86.7 78 65.4
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.6e-15 86.3 93 57.0
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.6e-15 86.3 91 59.3
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.6e-15 86.3 66 78.8
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.6e-15 86.3 66 78.8
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 2.1e-15 85.9 71 69.0
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 2.1e-15 85.9 72 70.8
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 2.7e-15 85.5 64 75.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.6e-15 85.1 75 62.7
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.7e-15 84.7 72 66.7
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 4.7e-15 84.7 72 66.7
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 4.7e-15 84.7 73 68.5
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 6.1e-15 84.3 76 63.2
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 8.0e-15 84.0 91 54.9
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 8.0e-15 84.0 65 70.8
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 8.0e-15 84.0 73 64.4
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.4e-14 83.2 95 58.9
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 1.8e-14 82.8 72 62.5
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.8e-14 82.8 76 63.2
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.8e-14 82.8 71 66.2
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 1.8e-14 82.8 71 67.6
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.8e-14 82.8 64 73.4
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 2.3e-14 82.4 76 60.5
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 2.3e-14 82.4 74 62.2
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 2.3e-14 82.4 74 62.2
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 2.3e-14 82.4 74 62.2
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 2.3e-14 82.4 74 62.2
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 2.3e-14 82.4 74 62.2
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.3e-14 82.4 78 65.4
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 2.3e-14 82.4 64 71.9
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.3e-14 82.4 64 71.9
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.3e-14 82.4 73 63.0
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 3.0e-14 82.0 78 61.5
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 3.0e-14 82.0 74 66.2
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 3.9e-14 81.6 104 53.8
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 6.7e-14 80.9 76 64.5
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 6.7e-14 80.9 92 52.2
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 6.7e-14 80.9 71 63.4
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 8.8e-14 80.5 77 63.6
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.1e-13 80.1 92 51.1
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.5e-13 79.7 104 54.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 1.5e-13 79.7 99 59.6
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.5e-13 79.7 71 64.8
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 1.5e-13 79.7 76 59.2
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.0e-13 79.3 72 63.9
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 2.6e-13 79.0 99 53.5
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 3.3e-13 78.6 59 76.3
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 4.4e-13 78.2 88 54.5
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 4.4e-13 78.2 73 61.6
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 4.4e-13 78.2 88 54.5
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 5.7e-13 77.8 71 62.0
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 7.4e-13 77.4 77 63.6
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 9.7e-13 77.0 81 59.3
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 9.7e-13 77.0 74 62.2
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 9.7e-13 77.0 75 62.7
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 1.7e-12 76.3 90 51.1
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 1.7e-12 76.3 96 55.2
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.7e-12 76.3 63 69.8
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 2.2e-12 75.9 73 61.6
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 2.8e-12 75.5 69 62.3
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.8e-12 75.5 63 68.3
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.8e-12 75.5 67 67.2
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 2.8e-12 75.5 69 65.2
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 2.8e-12 75.5 88 56.8
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.7e-12 75.1 74 56.8
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.3e-12 74.3 95 54.7
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.2e-12 73.9 87 52.9
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 8.2e-12 73.9 76 52.6
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.1e-11 73.6 95 51.6
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.8e-11 72.8 69 56.5
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 1.8e-11 72.8 72 62.5
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.8e-11 72.8 73 58.9
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 2.4e-11 72.4 81 55.6
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 2.4e-11 72.4 87 52.9
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 3.1e-11 72.0 60 65.0
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 4.1e-11 71.6 50 80.0
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 7.0e-11 70.9 67 62.7
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 7.0e-11 70.9 67 61.2
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 9.1e-11 70.5 70 62.9
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.2e-10 70.1 79 59.5
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 1.2e-10 70.1 72 56.9
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.2e-10 70.1 70 62.9
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 1.6e-10 69.7 82 59.8
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.3e-09 66.6 100 51.0
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.3e-09 66.6 100 51.0
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 1.7e-09 66.2 69 60.9
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 2.2e-09 65.9 69 60.9
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 2.2e-09 65.9 69 60.9
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 2.9e-09 65.5 57 64.9
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 2.9e-09 65.5 74 54.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 3.8e-09 65.1 59 62.7
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.8e-09 65.1 67 59.7
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 5.0e-09 64.7 69 55.1
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 5.0e-09 64.7 63 57.1
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 8.5e-09 63.9 70 58.6
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 8.5e-09 63.9 69 52.2
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.1e-08 63.5 66 54.5
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.5e-08 63.2 69 50.7
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 1.5e-08 63.2 67 55.2
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 1.9e-08 62.8 71 53.5
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 3.2e-08 62.0 58 63.8
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 4.2e-08 61.6 80 50.0
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 4.2e-08 61.6 71 53.5
QL04p001566 Quercus lobata HOM05D004722 ORTHO05D005453 5.5e-08 61.2 54 66.7
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 7.2e-08 60.8 73 53.4
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 1.2e-07 60.1 52 67.3
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.6e-07 59.7 84 48.8
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 2.7e-07 58.9 64 56.2
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 4.7e-07 58.2 50 68.0
Nitab4.5_0002319g0020 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.8e-06 56.2 66 50.0
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 3.0e-06 55.5 84 45.2
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 3.0e-06 55.5 85 47.1
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 6.7e-06 54.3 64 56.2
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.7e-06 54.3 86 45.3
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 8.8e-06 53.9 83 43.4


User provided reference genes

Program Settings