Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1319400 Malus domestica HOM05D006202 ORTHO05D008227 3.1e-290 1001.1 521 100.0
Prupe.1G561800 Prunus persica HOM05D006202 ORTHO05D008227 1.4e-194 683.3 400 84.5
RcHm_v2.0_Chr1g0313251 Rosa chinensis HOM05D006202 ORTHO05D008227 9.6e-183 644.0 382 82.7
QL04p001552 Quercus lobata HOM05D006202 ORTHO05D008227 5.8e-180 634.8 385 80.8
CSS0029964 Camellia sinensis var. sinensis HOM05D006202 ORTHO05D008227 1.3e-179 633.6 362 84.5
Lj3g0005275 Lotus japonicus HOM05D006202 ORTHO05D008227 8.4e-179 630.9 360 85.3
Manes.10G152100 Manihot esculenta HOM05D006202 ORTHO05D008227 1.1e-178 630.6 370 83.8
Actinidia21584 Actinidia chinensis HOM05D006202 ORTHO05D008227 3.2e-178 629.0 364 83.5
Haze_03268 Corylus avellana HOM05D006202 ORTHO05D008227 4.2e-178 628.6 380 81.3
Cfa010710 Carpinus fangiana HOM05D006202 ORTHO05D008227 5.5e-178 628.2 376 81.1
TWI73G0821 Tripterygium wilfordii HOM05D006202 ORTHO05D008227 1.2e-177 627.1 353 84.1
Glyma.15G268400 Glycine max HOM05D006202 ORTHO05D008227 2.1e-177 626.3 353 85.6
TAR369G0651 Trochodendron aralioides HOM05D006202 ORTHO05D008227 2.1e-177 626.3 377 80.4
Dinv43939 Davidia involucrata HOM05D006202 ORTHO05D008227 3.5e-177 625.5 388 78.9
Potri.009G024100 Populus trichocarpa HOM05D006202 ORTHO05D008227 7.9e-177 624.4 359 84.1
Glyma.08G157800 Glycine max HOM05D006202 ORTHO05D008227 1.3e-176 623.6 359 84.1
Lalb_Chr01g0015151 Lupinus albus HOM05D006202 ORTHO05D008227 2.3e-176 622.9 353 84.7
CiPaw.02G012300 Carya illinoinensis HOM05D006202 ORTHO05D008227 3.9e-176 622.1 380 80.3
vmacro21164 Vaccinium macrocarpon HOM05D006202 ORTHO05D008227 6.7e-176 621.3 346 85.8
FAN04G1730 Fragaria x ananassa HOM05D006202 ORTHO05D008227 8.7e-176 620.9 347 85.6
VMungo1080G0924 Vigna mungo HOM05D006202 ORTHO05D008227 1.5e-175 620.2 355 83.9
FvH4_5g30330 Fragaria vesca HOM05D006202 ORTHO05D008227 3.3e-175 619.0 343 87.2
Oeu060701.1 Olea europaea HOM05D006202 ORTHO05D008227 3.3e-175 619.0 353 84.4
Rhsim03G0068600 Rhododendron simsii HOM05D006202 ORTHO05D008227 4.3e-175 618.6 393 78.1
Cc02_g26930 Coffea canephora HOM05D006202 ORTHO05D008227 9.6e-175 617.5 353 84.7
THA.LOC104815880 Tarenaya hassleriana HOM05D006202 ORTHO05D008227 9.6e-175 617.5 350 84.0
FAN08G1924 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.3e-174 617.1 347 85.3
FAN18G2168 Fragaria x ananassa HOM05D006202 ORTHO05D008227 1.3e-174 617.1 343 86.9
Phvul.005G042000 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 1.3e-174 617.1 354 84.7
Lj9C620G10 Lonicera japonica HOM05D006202 ORTHO05D008227 1.6e-174 616.7 346 85.3
ClCG09G003710 Citrullus lanatus HOM05D006202 ORTHO05D008227 2.1e-174 616.3 347 85.3
MSTRG.28100 Avicennia marina HOM05D006202 ORTHO05D008227 3.7e-174 615.5 390 76.4
FAN13G0191 Fragaria x ananassa HOM05D006202 ORTHO05D008227 3.7e-174 615.5 343 86.9
Nitab4.5_0010722g0010 Nicotiana tabacum HOM05D006202 ORTHO05D008227 4.8e-174 615.1 381 78.7
Medtr2g061710 Medicago truncatula HOM05D006202 ORTHO05D008227 6.2e-174 614.8 343 86.0
Aqoxy1G00030 Aquilegia oxysepala HOM05D006202 ORTHO05D008227 8.2e-174 614.4 372 80.6
Atru.chr11.2704 Acer truncatum HOM05D006202 ORTHO05D008227 1.4e-173 613.6 346 84.4
Nitab4.5_0000468g0040 Nicotiana tabacum HOM05D006202 ORTHO05D008227 2.4e-173 612.8 376 80.1
TPR.G16148 Trifolium pratense HOM05D006202 ORTHO05D008227 3.1e-173 612.5 343 85.4
Sc10g0005310 Simmondsia chinensis HOM05D006202 ORTHO05D008227 3.4e-172 609.0 353 83.6
arahy.Tifrunner.gnm1.ann1.Y9YBLC Arachis hypogaea HOM05D006202 ORTHO05D008227 4.5e-172 608.6 353 82.2
arahy.Tifrunner.gnm1.ann1.03K86Q Arachis hypogaea HOM05D006202 ORTHO05D008227 5.8e-172 608.2 373 79.6
Cpa.g.sc189.4 Carica papaya HOM05D006202 ORTHO05D008227 5.8e-172 608.2 395 77.2
Sed0014986 Sechium edule HOM05D006202 ORTHO05D008227 7.6e-172 607.8 389 78.1
Sopen01g033340 Solanum pennellii HOM05D006202 ORTHO05D008227 1.0e-171 607.4 376 79.0
GSVIVG01001357001 Vitis vinifera HOM05D006202 ORTHO05D008227 1.3e-171 607.1 418 73.4
Aa31LG5G5070 Aethionema arabicum HOM05D006202 ORTHO05D008227 4.9e-171 605.1 386 76.7
Migut.I00539 Erythranthe guttata HOM05D006202 ORTHO05D008227 1.1e-170 604.0 389 77.6
Ciclev10031726m.g Citrus clementina HOM05D006202 ORTHO05D008227 1.4e-170 603.6 388 77.8
ECA234G4350 Erigeron canadensis HOM05D006202 ORTHO05D008227 1.9e-170 603.2 365 78.4
MBI04_g33961_MAGBIO Magnolia biondii HOM05D006202 ORTHO05D008227 1.9e-170 603.2 347 83.9
AL4G27290 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 2.5e-170 602.8 388 76.0
PSO384G0467 Papaver somniferum HOM05D006202 ORTHO05D008227 2.5e-170 602.8 343 84.8
PGSC0003DMG401028974 Solanum tuberosum HOM05D006202 ORTHO05D008227 3.2e-170 602.4 346 83.2
Carub.0004s1327 Capsella rubella HOM05D006202 ORTHO05D008227 5.5e-170 601.7 360 80.3
Migut.B01400 Erythranthe guttata HOM05D006202 ORTHO05D008227 5.5e-170 601.7 347 83.3
AT2G31955 Arabidopsis thaliana HOM05D006202 ORTHO05D008227 7.1e-170 601.3 378 77.5
Peaxi162Scf00402g00616 Petunia axillaris HOM05D006202 ORTHO05D008227 7.1e-170 601.3 344 83.4
PSO339G0702 Papaver somniferum HOM05D006202 ORTHO05D008227 9.3e-170 600.9 343 84.5
Ca_03201_v3 Cicer arietinum L. HOM05D006202 ORTHO05D008227 2.1e-169 599.7 345 84.1
Solyc01g073730.4 Solanum lycopersicum HOM05D006202 ORTHO05D008227 2.1e-169 599.7 376 78.2
Nn2g15679 Nelumbo nucifera HOM05D006202 ORTHO05D008227 3.5e-169 599.0 352 81.2
SGA_v2.0_scaffold5G03106 Striga asiatica HOM05D006202 ORTHO05D008227 6.1e-169 598.2 353 80.7
CAN.G129.48 Capsicum annuum HOM05D006202 ORTHO05D008227 7.9e-169 597.8 400 75.0
Sp4g14320 Schrenkiella parvula HOM05D006202 ORTHO05D008227 1.3e-168 597.0 364 77.7
Lsat_1_v5_gn_4_46560 Lactuca sativa HOM05D006202 ORTHO05D008227 1.8e-168 596.7 366 77.6
arahy.Tifrunner.gnm1.ann1.YK6119 Arachis hypogaea HOM05D006202 ORTHO05D008227 2.3e-168 596.3 373 78.3
Phvul.005G041900 Phaseolus vulgaris HOM05D006202 ORTHO05D008227 3.0e-168 595.9 325 87.7
COL.COLO4_07529 Corchorus olitorius HOM05D006202 ORTHO05D008227 5.1e-168 595.1 350 81.4
Thecc.09G200100 Theobroma cacao HOM05D006202 ORTHO05D008227 6.7e-168 594.7 354 81.4
SalBow5G5675 Salvia bowleyana HOM05D006202 ORTHO05D008227 8.7e-168 594.3 352 80.4
Gohir.D08G018900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 2.5e-167 592.8 347 82.1
Gorai.004G013400 Gossypium raimondii HOM05D006202 ORTHO05D008227 3.3e-167 592.4 330 85.8
Duzib168G0949 Durio zibethinus HOM05D006202 ORTHO05D008227 9.7e-167 590.9 356 80.9
Thhalv10016791m.g Eutrema salsugineum HOM05D006202 ORTHO05D008227 9.7e-167 590.9 343 82.5
Sabra09G0015400 Salix brachista HOM05D006202 ORTHO05D008227 1.3e-166 590.5 411 72.0
HanXRQChr16g0520351 Helianthus annuus HOM05D006202 ORTHO05D008227 2.8e-166 589.3 350 79.4
Gohir.A08G008900 Gossypium hirsutum HOM05D006202 ORTHO05D008227 3.7e-166 589.0 330 84.8
BcaC01g05926 Brassica carinata HOM05D006202 ORTHO05D008227 4.8e-166 588.6 363 78.0
Ah.14g085700 Amaranthus hybridus HOM05D006202 ORTHO05D008227 3.1e-165 585.9 352 79.0
ATR0605G327 Amborella trichopoda HOM05D006202 ORTHO05D008227 5.3e-165 585.1 379 75.5
BraA03t11059Z Brassica rapa HOM05D006202 ORTHO05D008227 6.9e-165 584.7 363 77.4
Os12g0507000 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 6.9e-165 584.7 352 78.4
BolC3t14483H Brassica oleracea HOM05D006202 ORTHO05D008227 4.5e-164 582.0 364 77.5
DCAR_001807 Daucus carota HOM05D006202 ORTHO05D008227 1.0e-163 580.9 346 79.8
CsaV3_7G031490 Cucumis sativus L. HOM05D006202 ORTHO05D008227 1.3e-163 580.5 317 87.1
Eucgr.A00275 Eucalyptus grandis HOM05D006202 ORTHO05D008227 6.5e-163 578.2 343 80.5
AUR62034625 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.1e-162 577.4 345 80.0
Eucgr.A00079 Eucalyptus grandis HOM05D006202 ORTHO05D008227 1.1e-162 577.4 351 79.5
Zm00001eb244230 Zea mays HOM05D006202 ORTHO05D008227 1.4e-162 577.0 344 79.4
AUR62036652 Chenopodium quinoa HOM05D006202 ORTHO05D008227 1.9e-162 576.6 345 79.7
Os02g0258900 Oryza sativa ssp. japonica HOM05D006202 ORTHO05D008227 5.5e-162 575.1 348 78.2
EL10Ac3g06182 Beta vulgaris HOM05D006202 ORTHO05D008227 1.8e-160 570.1 343 79.6
unitig_749.g13486 Utricularia gibba HOM05D006202 ORTHO05D008227 3.9e-160 568.9 363 75.2
CANSAT80G0703 Cannabis sativa HOM05D006202 ORTHO05D008227 5.1e-160 568.5 394 73.4
HPP92_023784 Vanilla planifolia HOM05D006202 ORTHO05D008227 5.3e-157 558.5 350 76.3
C03p21020 Brassica napus HOM05D000200 ORTHO05D000262 2.8e-150 536.2 342 76.0
A03p17940 Brassica napus HOM05D000200 ORTHO05D000262 6.3e-150 535.0 342 75.7
Actinidia15848 Actinidia chinensis HOM05D006202 ORTHO05D008227 8.5e-147 524.6 354 74.9
Mapoly0045s0149 Marchantia polymorpha HOM05D006202 ORTHO05D008227 3.9e-144 515.8 362 68.8
CDE06G1615 Ceratophyllum demersum HOM05D006202 ORTHO05D008227 7.4e-143 511.5 404 66.3
SEGI_40145 Sequoiadendron giganteum HOM05D006202 ORTHO05D008227 2.0e-140 503.4 396 64.6
SMO361G0213 Selaginella moellendorffii HOM05D006202 ORTHO05D008227 3.5e-140 502.7 344 70.1
Pp3c5_22480 Physcomitrium patens HOM05D006202 ORTHO05D008227 2.5e-138 496.5 327 71.3
CBR_g36677 Chara braunii HOM05D006202 ORTHO05D008227 2.2e-134 483.4 373 63.5
Potri.001G230604 Populus trichocarpa HOM05D006202 ORTHO05D008227 7.0e-133 478.4 388 64.7
arahy.Tifrunner.gnm1.ann1.JS3HL2 Arachis hypogaea HOM05D006202 ORTHO05D008227 1.3e-131 474.2 354 67.5
AL80U10060 Arabidopsis lyrata HOM05D006202 ORTHO05D008227 5.7e-127 458.8 388 62.6
MCO15G349 Micromonas commoda HOM05D006202 ORTHO05D008227 5.7e-119 432.2 327 62.1
TAR369G1105 Trochodendron aralioides HOM05D006202 ORTHO05D008227 1.6e-116 424.1 266 77.8
Cre13.g602901 Chlamydomonas reinhardtii HOM05D006202 ORTHO05D008227 5.6e-114 415.6 374 57.5
MELO3C023505.2 Cucumis melo HOM05D006202 ORTHO05D008227 5.6e-114 415.6 286 71.3
CARHR125690 Cardamine hirsuta HOM05D006202 ORTHO05D008227 3.7e-110 402.9 266 74.1
Psat1g128920 Pisum sativum HOM05D006202 ORTHO05D008227 4.9e-110 402.5 228 82.9
Hund12940 Selenicereus undatus HOM05D006202 ORTHO05D008227 1.9e-109 400.6 247 76.5
PRCOL_00002201 Prasinoderma coloniale HOM05D006202 ORTHO05D008227 6.0e-108 395.6 349 55.6
Pp3c6_6420 Physcomitrium patens HOM05D006202 ORTHO05D008227 7.1e-101 372.1 325 57.5
Cfa022704 Carpinus fangiana HOM05D006202 ORTHO05D008227 2.3e-96 357.1 369 50.7
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 1.7e-70 271.2 287 47.7
SHI12251 Sapria himalayana HOM05D006202 ORTHO05D008227 1.0e-67 261.9 163 77.3
SHI12244 Sapria himalayana HOM05D006202 ORTHO05D008227 5.6e-66 256.1 165 75.2
AagrBONN_evm.TU.Sc2ySwM_344.4902 Anthoceros agrestis HOM05D006202 ORTHO05D008227 6.7e-59 232.6 183 62.3
SHI12245 Sapria himalayana HOM05D006202 ORTHO05D008227 4.3e-50 203.4 179 59.8
ATR0605G108 Amborella trichopoda HOM05D006202 ORTHO05D008227 4.1e-48 196.8 131 74.0
SHI34064 Sapria himalayana HOM05D006202 ORTHO05D367267 1.0e-14 85.9 59 74.6
A05p13580 Brassica napus HOM05D006202 ORTHO05D033532 3.8e-14 84.0 90 50.0
BraA05t20295Z Brassica rapa HOM05D006202 ORTHO05D033532 3.8e-14 84.0 90 50.0
TAR623G0116 Trochodendron aralioides HOM05D006202 ORTHO05D414173 1.3e-09 68.9 35 85.7


User provided reference genes

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