Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 5.8e-184 647.5 349 100.0
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.2e-144 516.9 318 88.1
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 4.3e-94 349.0 325 67.1
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.1e-62 244.6 259 56.8
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.2e-59 234.6 355 46.5
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 3.8e-58 229.6 327 49.2
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 9.3e-57 224.9 235 62.6
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.2e-56 224.6 271 50.6
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.2e-56 224.6 271 50.6
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 3.5e-56 223.0 301 46.5
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.8e-55 220.7 317 48.6
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 3.0e-55 219.9 371 43.7
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 6.7e-55 218.8 319 48.0
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 1.1e-54 218.0 304 49.3
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.3e-53 214.5 251 56.6
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 1.3e-53 214.5 275 48.0
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 2.8e-53 213.4 232 57.8
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 3.7e-53 213.0 306 45.8
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 8.2e-53 211.8 319 44.5
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 1.4e-52 211.1 301 48.5
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 9.0e-52 208.4 309 48.2
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 9.0e-52 208.4 308 47.1
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.5e-51 207.6 238 56.3
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 2.6e-51 206.8 282 47.2
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 5.9e-51 205.7 324 43.8
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 8.5e-50 201.8 349 42.7
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.1e-49 201.4 317 46.4
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.6e-48 197.6 318 45.0
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 7.9e-48 195.3 302 42.7
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 7.9e-48 195.3 330 44.5
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.8e-47 194.1 306 42.8
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 5.1e-47 192.6 377 39.5
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 8.7e-47 191.8 248 48.4
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.1e-46 191.4 297 46.1
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 1.9e-46 190.7 362 41.2
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 2.5e-46 190.3 363 41.0
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 5.7e-46 189.1 377 39.0
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 6.3e-45 185.7 181 56.9
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 8.2e-45 185.3 290 43.1
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 5.3e-44 182.6 193 55.4
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 2.0e-43 180.6 270 44.4
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 3.4e-43 179.9 248 48.8
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.0e-42 178.3 323 40.9
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.3e-42 177.9 322 42.9
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 2.2e-42 177.2 303 42.2
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 2.9e-42 176.8 273 45.1
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 3.8e-42 176.4 295 41.0
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 1.4e-41 174.5 263 47.5
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 1.9e-41 174.1 301 39.5
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.9e-41 174.1 319 42.0
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 3.2e-41 173.3 329 41.0
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 4.2e-41 172.9 277 43.0
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 7.2e-41 172.2 286 45.1
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 9.4e-41 171.8 293 43.3
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 1.2e-40 171.4 287 45.3
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.6e-40 171.0 357 38.7
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.6e-40 171.0 319 41.7
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 3.6e-40 169.9 175 57.7
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 1.4e-39 167.9 330 40.9
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 3.0e-39 166.8 325 41.2
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 3.9e-39 166.4 365 38.9
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 2.6e-38 163.7 320 43.4
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 2.6e-38 163.7 314 41.7
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 7.4e-38 162.2 158 60.1
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 9.7e-38 161.8 281 42.7
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 1.3e-37 161.4 295 39.7
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.7e-37 161.0 280 42.1
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 2.8e-37 160.2 287 42.9
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 3.7e-37 159.8 399 33.1
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 1.1e-36 158.3 253 42.7
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 2.4e-36 157.1 290 39.0
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 3.1e-36 156.8 278 40.6
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 6.9e-36 155.6 255 40.4
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 2.6e-35 153.7 311 37.9
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 3.4e-35 153.3 327 37.3
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 4.5e-35 152.9 290 41.0
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 7.7e-35 152.1 296 39.5
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 8.5e-34 148.7 261 40.6
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.4e-33 147.9 294 39.8
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.4e-33 147.9 274 41.2
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.9e-33 147.5 308 40.9
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 7.2e-33 145.6 251 42.2
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 7.2e-33 145.6 304 39.5
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.2e-32 144.8 336 37.8
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 6.1e-32 142.5 298 40.6
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 3.0e-31 140.2 295 39.0
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.1e-30 138.3 152 51.3
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 9.7e-30 135.2 305 37.4
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 1.8e-28 131.0 276 39.1
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 2.4e-28 130.6 260 38.1
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 3.1e-28 130.2 305 37.0
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 3.1e-28 130.2 284 36.6
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 1.2e-27 128.3 353 35.4
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 1.6e-27 127.9 319 36.7
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 7.7e-27 125.6 286 38.5
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 7.7e-27 125.6 298 36.2
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 1.0e-26 125.2 317 38.5
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 1.3e-26 124.8 162 48.8
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 2.2e-26 124.0 312 35.6
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 2.2e-26 124.0 145 49.7
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 6.5e-26 122.5 287 36.2
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 1.1e-25 121.7 241 39.0
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.1e-25 121.7 176 47.7
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 2.5e-25 120.6 327 36.1
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 2.5e-25 120.6 146 50.0
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 4.2e-25 119.8 290 35.5
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 7.2e-25 119.0 356 34.3
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 7.2e-25 119.0 209 39.2
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 9.4e-25 118.6 196 40.3
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 2.1e-24 117.5 185 43.2
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 2.3e-23 114.0 334 36.5
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 8.8e-23 112.1 189 43.4
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 1.2e-22 111.7 257 36.2
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 4.4e-22 109.8 145 45.5
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 5.7e-22 109.4 355 34.4
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.7e-21 107.8 343 31.5
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 2.2e-21 107.5 309 33.0
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.7e-21 106.7 289 32.2
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 1.2e-19 101.7 302 32.5
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 2.9e-18 97.1 302 33.4
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 3.8e-18 96.7 296 33.4
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 6.5e-18 95.9 104 58.7
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.6e-16 91.3 305 33.1
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 1.0e-15 88.6 251 34.7
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 5.2e-15 86.3 287 33.4
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 6.8e-15 85.9 90 53.3
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 2.6e-14 84.0 63 65.1
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 2.6e-14 84.0 175 36.6
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 6.3e-13 79.3 252 35.7
Sabra16G0137500 Salix brachista HOM05D004925 ORTHO05D005643 1.1e-12 78.6 238 34.0
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 1.8e-12 77.8 62 58.1
CSS0015862 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 9.1e-12 75.5 136 41.9
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 4.5e-11 73.2 62 56.5
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 1.0e-10 72.0 198 33.8
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 1.3e-10 71.6 213 31.9
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 2.3e-10 70.9 139 36.0
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 2.9e-10 70.5 114 41.2
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 6.1e-08 62.8 96 42.7
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.4e-07 61.6 92 43.5
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 1.2e-06 58.5 90 42.2
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 2.6e-06 57.4 91 39.6


User provided reference genes

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