Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.0e-208 729.9 405 100.0
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 7.2e-178 627.5 406 85.7
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 4.0e-160 568.5 405 79.8
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 3.5e-132 475.7 411 68.6
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.0e-128 462.2 410 66.8
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.9e-126 455.3 414 64.7
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-125 454.1 415 66.5
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 7.1e-125 451.4 421 64.1
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.1e-120 436.0 415 65.1
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 1.0e-107 394.4 405 57.5
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 2.3e-107 393.3 405 57.3
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.3e-98 362.5 409 52.6
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.7e-98 362.1 409 53.5
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 7.4e-98 361.7 405 52.8
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.8e-97 359.8 409 53.5
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 9.1e-96 354.8 426 52.1
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 8.5e-94 348.2 393 53.2
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 7.2e-93 345.1 410 51.7
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.0e-91 341.3 406 52.5
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.4e-91 340.9 404 49.8
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.8e-91 340.5 411 51.6
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.3e-91 340.1 408 51.0
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 2.0e-90 337.0 409 49.9
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 4.4e-90 335.9 420 51.0
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 5.7e-90 335.5 407 50.1
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 9.7e-90 334.7 405 51.4
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 2.2e-89 333.6 406 50.0
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 2.8e-89 333.2 427 48.5
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 3.7e-89 332.8 403 48.9
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 8.2e-89 331.6 410 51.5
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 2.4e-88 330.1 418 48.1
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 4.1e-88 329.3 366 53.8
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 5.3e-88 328.9 411 49.9
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 1.2e-87 327.8 439 47.6
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 3.4e-87 326.2 412 50.7
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 5.9e-87 325.5 420 48.8
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 1.0e-86 324.7 410 48.8
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.2e-85 319.7 404 47.5
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 5.5e-85 318.9 417 48.2
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 5.5e-85 318.9 405 48.9
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 1.1e-82 311.2 411 48.7
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.0e-82 310.5 429 47.3
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 2.2e-81 307.0 441 44.9
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 2.8e-81 306.6 415 48.4
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.4e-80 303.5 414 47.1
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 1.0e-78 298.1 408 45.1
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 5.0e-78 295.8 402 49.0
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 5.0e-78 295.8 423 47.0
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 1.9e-77 293.9 425 45.6
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 1.2e-76 291.2 411 46.2
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 2.1e-76 290.4 401 44.4
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 2.1e-76 290.4 408 44.9
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.5e-74 284.3 411 43.8
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 2.8e-73 280.0 401 44.1
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 3.7e-73 279.6 425 45.2
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 3.7e-73 279.6 415 42.2
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 3.7e-73 279.6 415 42.2
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.4e-72 276.9 418 44.7
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 3.1e-72 276.6 421 44.7
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 4.5e-71 272.7 353 49.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 5.0e-70 269.2 445 42.5
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 1.1e-69 268.1 437 39.6
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 2.5e-69 266.9 407 42.8
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.5e-69 266.9 425 43.1
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.5e-69 266.9 409 42.3
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 5.5e-69 265.8 428 42.8
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.5e-69 265.8 425 43.8
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 6.1e-68 262.3 254 58.3
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 8.0e-68 261.9 423 41.8
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.0e-67 261.5 402 42.5
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 2.3e-67 260.4 423 41.6
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.3e-67 260.4 409 47.7
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 6.8e-67 258.8 425 41.4
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 1.5e-66 257.7 415 40.2
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 3.4e-66 256.5 394 42.4
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 9.8e-66 255.0 415 40.7
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.1e-64 251.5 423 40.0
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 4.1e-64 249.6 360 45.3
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 1.6e-63 247.7 424 40.3
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 2.0e-63 247.3 406 41.1
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 7.7e-63 245.4 424 39.9
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.9e-61 240.7 399 41.4
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 3.3e-61 240.0 407 41.0
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.6e-60 237.7 418 38.5
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.1e-60 237.3 437 38.7
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 2.8e-60 236.9 432 38.7
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 2.8e-60 236.9 406 41.6
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.6e-60 236.5 441 39.5
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.8e-59 234.2 286 52.1
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.8e-59 234.2 249 51.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 3.0e-59 233.4 437 39.6
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 5.2e-59 232.6 352 42.9
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 6.8e-59 232.3 430 38.8
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.6e-58 230.3 431 38.3
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 7.5e-58 228.8 429 37.3
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 2.8e-57 226.9 431 38.7
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.7e-57 226.5 409 39.4
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.3e-57 225.7 409 39.9
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 4.3e-53 213.0 432 37.5
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 4.3e-53 213.0 432 37.5
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 7.3e-53 212.2 356 40.2
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 9.5e-53 211.8 432 37.7
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 2.1e-52 210.7 432 36.8
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.8e-52 210.3 409 38.9
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 8.0e-52 208.8 432 37.5
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 5.2e-51 206.1 439 38.3
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.7e-49 201.1 432 36.1
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 7.0e-48 195.7 436 36.2
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 9.2e-48 195.3 418 37.8
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.6e-47 194.5 436 36.0
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 7.8e-47 192.2 415 35.7
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 2.1e-44 184.1 318 38.4
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.2e-42 178.3 437 35.5
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 1.5e-42 177.9 445 32.8
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.0e-42 177.6 435 34.9
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 2.6e-42 177.2 439 35.1
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 1.1e-40 171.8 266 45.9
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 6.6e-38 162.5 255 44.7
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 2.1e-36 157.5 264 40.5
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 3.6e-36 156.8 212 41.0
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.8e-35 154.5 249 42.2
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 5.2e-35 152.9 255 39.2
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 8.9e-35 152.1 249 41.4
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.8e-34 149.4 255 38.4
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 7.5e-34 149.1 240 40.4
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 7.5e-34 149.1 257 39.3
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 1.3e-33 148.3 261 39.1
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.9e-32 144.4 249 40.2
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 2.4e-32 144.1 490 29.6
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 2.4e-32 144.1 225 39.6
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 3.2e-32 143.7 406 29.6
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 4.1e-32 143.3 258 38.4
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 4.1e-32 143.3 232 38.8
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 7.1e-32 142.5 229 38.4
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 9.2e-32 142.1 248 39.5
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 1.2e-31 141.7 451 29.7
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 3.5e-31 140.2 236 41.9
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 3.5e-31 140.2 260 38.8
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 4.6e-31 139.8 429 32.6
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 6.0e-31 139.4 262 36.6
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.3e-30 138.3 242 37.2
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.3e-30 137.5 204 43.1
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 3.0e-30 137.1 262 38.2
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 3.0e-30 137.1 248 35.9
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 7.3e-29 132.5 226 38.9
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.1e-27 128.6 316 34.2
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 4.0e-27 126.7 207 39.1
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 6.8e-27 125.9 420 28.8
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 8.9e-27 125.6 256 37.1
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 8.9e-27 125.6 255 35.7
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.4e-26 123.6 198 38.9
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 1.3e-25 121.7 120 60.8
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 5.4e-24 116.3 451 29.0
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 7.8e-23 112.5 265 33.6
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 2.3e-22 110.9 200 37.5
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 2.3e-22 110.9 263 33.5
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 7.3e-21 105.9 129 49.6
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.8e-20 104.0 244 33.2
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.9e-17 93.2 122 46.7
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 4.2e-16 90.1 143 37.8
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 4.6e-15 86.7 213 33.3
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.1e-14 83.2 135 37.8
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.3e-13 80.5 148 37.2
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 3.3e-13 80.5 147 37.4
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 3.3e-13 80.5 147 37.4
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.3e-12 78.6 131 43.5
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 1.5e-10 71.6 113 35.4
VMungo1383G1333 Vigna mungo HOM05D004075 ORTHO05D004538 9.9e-10 68.9 52 59.6
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 5.4e-08 63.2 160 33.1
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 2.7e-07 60.8 48 56.2
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 6.0e-07 59.7 151 32.5


User provided reference genes

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