Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1312300 Malus domestica HOM05D000990 ORTHO05D000810 7.4e-49 196.8 95 100.0
MD13G1131900 Malus domestica HOM05D000990 ORTHO05D000810 1.1e-28 129.8 82 80.5
MD16G1142200 Malus domestica HOM05D000990 ORTHO05D000810 2.1e-27 125.6 73 87.7
Prupe.1G213500 Prunus persica HOM05D000990 ORTHO05D000810 4.0e-26 121.3 82 75.6
RcHm_v2.0_Chr4g0428741 Rosa chinensis HOM05D000990 ORTHO05D000810 6.5e-21 104.0 70 72.9
FAN17G1797 Fragaria x ananassa HOM05D000990 ORTHO05D000810 8.5e-21 103.6 71 71.8
FAN07G2954 Fragaria x ananassa HOM05D000990 ORTHO05D000810 7.2e-20 100.5 70 70.0
Atru.chr12.1438 Acer truncatum HOM05D000990 ORTHO05D000810 2.1e-19 99.0 96 59.4
FvH4_4g22510 Fragaria vesca HOM05D000990 ORTHO05D000810 2.7e-19 98.6 70 68.6
FAN12G2538 Fragaria x ananassa HOM05D000990 ORTHO05D000810 2.7e-19 98.6 70 68.6
QL03p048936 Quercus lobata HOM05D000990 ORTHO05D000810 1.4e-18 96.3 74 67.6
Cfa009458 Carpinus fangiana HOM05D001551 ORTHO05D008917 2.0e-17 92.4 73 68.5
Haze_12512 Corylus avellana HOM05D000990 ORTHO05D000810 2.0e-17 92.4 73 68.5
CiPaw.05G100100 Carya illinoinensis HOM05D000990 ORTHO05D000810 7.5e-17 90.5 71 67.6
Dinv17531 Davidia involucrata HOM05D000990 ORTHO05D000810 9.8e-17 90.1 81 60.5
Ciclev10005792m.g Citrus clementina HOM05D000990 ORTHO05D000810 1.7e-16 89.4 87 57.5
TAR629G1383 Trochodendron aralioides HOM05D000990 ORTHO05D000810 3.7e-16 88.2 75 61.3
GSVIVG01001107001 Vitis vinifera HOM05D000990 ORTHO05D000810 4.8e-16 87.8 75 62.7
Nn3g16256 Nelumbo nucifera HOM05D000990 ORTHO05D000810 6.3e-16 87.4 94 52.1
Rhsim12G0016300 Rhododendron simsii HOM05D000990 ORTHO05D000810 8.3e-16 87.0 81 58.0
Hma1.2p1_1494F.1_g286900 Hydrangea macrophylla HOM05D000990 ORTHO05D000810 1.4e-15 86.3 81 59.3
Thecc.02G190900 Theobroma cacao HOM05D000990 ORTHO05D000810 5.4e-15 84.3 75 54.7
Actinidia30580 Actinidia chinensis HOM05D000990 ORTHO05D000810 1.6e-14 82.8 81 56.8
Potri.001G068700 Populus trichocarpa HOM05D000990 ORTHO05D000810 2.0e-14 82.4 75 62.7
COL.COLO4_34045 Corchorus olitorius HOM05D000990 ORTHO05D000810 2.7e-14 82.0 75 54.7
PGR119G2150 Punica granatum HOM05D000990 ORTHO05D000810 2.7e-14 82.0 75 54.7
Gohir.D04G141100 Gossypium hirsutum HOM05D000990 ORTHO05D000810 5.9e-14 80.9 94 47.9
Gorai.012G126100 Gossypium raimondii HOM05D000990 ORTHO05D000810 5.9e-14 80.9 94 47.9
vmacro01011 Vaccinium macrocarpon HOM05D000990 ORTHO05D000810 1.7e-13 79.3 81 51.9
Gohir.A04G101900 Gossypium hirsutum HOM05D000990 ORTHO05D000810 2.9e-13 78.6 94 46.8
Potri.003G161600 Populus trichocarpa HOM05D000990 ORTHO05D000810 2.9e-13 78.6 73 63.0
Duzib248G1283 Durio zibethinus HOM05D000990 ORTHO05D000810 3.8e-13 78.2 75 54.7
CSS0009094 Camellia sinensis var. sinensis HOM05D000990 ORTHO05D000810 6.5e-13 77.4 64 64.1
Sabra03G0117400 Salix brachista HOM05D000990 ORTHO05D000810 6.5e-13 77.4 74 60.8
Actinidia22111 Actinidia chinensis HOM05D000990 ORTHO05D000810 2.5e-12 75.5 74 59.5
Eucgr.B03564 Eucalyptus grandis HOM05D000990 ORTHO05D000810 4.7e-11 71.2 74 52.7
Sabra01G0048000 Salix brachista HOM05D000990 ORTHO05D000810 4.7e-11 71.2 60 66.7
Lsat_1_v5_gn_3_32580 Lactuca sativa HOM05D000990 ORTHO05D000810 3.0e-10 68.6 93 50.5
Aqoxy7G03427 Aquilegia oxysepala HOM05D000990 ORTHO05D000810 6.8e-10 67.4 77 51.9
ATR0827G084 Amborella trichopoda HOM05D000990 ORTHO05D000810 2.6e-09 65.5 75 48.0
Os01g0926200 Oryza sativa ssp. japonica HOM05D000990 ORTHO05D000810 1.7e-08 62.8 72 48.6
PSO478G2434 Papaver somniferum HOM05D000990 ORTHO05D000810 8.3e-08 60.5 94 41.5
Solyc02g089240.3 Solanum lycopersicum HOM05D000990 ORTHO05D000810 8.3e-08 60.5 85 43.5
Nitab4.5_0000154g0170 Nicotiana tabacum HOM05D000990 ORTHO05D000810 1.1e-07 60.1 79 44.3
CsaV3_5G038700 Cucumis sativus L. HOM05D000990 ORTHO05D000810 1.4e-07 59.7 73 43.8
PSO017G0194 Papaver somniferum HOM05D000990 ORTHO05D000810 1.4e-07 59.7 94 40.4
Sopen02g034030 Solanum pennellii HOM05D000990 ORTHO05D000810 1.4e-07 59.7 85 43.5
MSTRG.2974 Avicennia marina HOM05D000990 ORTHO05D000810 2.4e-07 58.9 79 41.8
Oeu049877.1 Olea europaea HOM05D000990 ORTHO05D000810 2.4e-07 58.9 67 50.7
Actinidia18080 Actinidia chinensis HOM05D000990 ORTHO05D000810 3.1e-07 58.5 58 50.0
CiPaw.04G052200 Carya illinoinensis HOM05D000990 ORTHO05D000810 3.1e-07 58.5 50 54.0
Zm00001eb142740 Zea mays HOM05D000990 ORTHO05D000810 3.1e-07 58.5 84 44.0
Solyc02g065720.3 Solanum lycopersicum HOM05D000990 ORTHO05D000810 4.1e-07 58.2 69 44.9
MELO3C022050.2 Cucumis melo HOM05D000990 ORTHO05D000810 5.4e-07 57.8 71 43.7
Gorai.001G207100 Gossypium raimondii HOM05D000990 ORTHO05D000810 5.4e-07 57.8 74 45.9
Oeu007081.1 Olea europaea HOM05D000990 ORTHO05D000810 5.4e-07 57.8 61 49.2
Thecc.04G106300 Theobroma cacao HOM05D000990 ORTHO05D000810 5.4e-07 57.8 63 49.2
TPR.G23382 Trifolium pratense HOM05D000990 ORTHO05D000810 5.4e-07 57.8 60 48.3
ClCG11G004970 Citrullus lanatus HOM05D000990 ORTHO05D000810 7.0e-07 57.4 71 43.7
Cc07_g04490 Coffea canephora HOM05D000990 ORTHO05D000810 7.0e-07 57.4 68 44.1
Gohir.A07G179700 Gossypium hirsutum HOM05D000990 ORTHO05D000810 7.0e-07 57.4 78 46.2
COL.COLO4_10255 Corchorus olitorius HOM05D000990 ORTHO05D000810 9.2e-07 57.0 63 49.2
DCAR_025454 Daucus carota HOM05D000990 ORTHO05D000810 9.2e-07 57.0 57 52.6
Nitab4.5_0001434g0100 Nicotiana tabacum HOM05D000990 ORTHO05D000810 9.2e-07 57.0 63 47.6
Nitab4.5_0001541g0040 Nicotiana tabacum HOM05D000990 ORTHO05D000810 1.2e-06 56.6 69 43.5
Nitab4.5_0010228g0010 Nicotiana tabacum HOM05D000990 ORTHO05D000810 1.2e-06 56.6 67 46.3
Hund16234 Selenicereus undatus HOM05D000990 ORTHO05D000810 1.2e-06 56.6 92 35.9
MBI16_g34537_MAGBIO Magnolia biondii HOM05D000990 ORTHO05D000810 1.6e-06 56.2 72 47.2
Peaxi162Scf00020g02340 Petunia axillaris HOM05D000990 ORTHO05D000810 1.6e-06 56.2 73 43.8
Rhsim08G0077300 Rhododendron simsii HOM05D000990 ORTHO05D000810 1.6e-06 56.2 74 40.5
VMungo1383G0893 Vigna mungo HOM05D000990 ORTHO05D000810 1.6e-06 56.2 73 43.8
Lalb_Chr17g0336791 Lupinus albus HOM05D000990 ORTHO05D000810 2.0e-06 55.8 60 46.7
Rhsim10G0056500 Rhododendron simsii HOM05D000990 ORTHO05D000810 2.0e-06 55.8 50 54.0
Sed0014999 Sechium edule HOM05D000990 ORTHO05D007330 2.0e-06 55.8 61 45.9
Sc11g0008810 Simmondsia chinensis HOM05D000990 ORTHO05D000810 2.0e-06 55.8 76 39.5
VMungo1383G0376 Vigna mungo HOM05D000990 ORTHO05D000810 2.0e-06 55.8 72 43.1
EL10Ac2g04441 Beta vulgaris HOM05D000990 ORTHO05D000810 2.7e-06 55.5 83 37.3
CDE04G2268 Ceratophyllum demersum HOM05D000990 ORTHO05D000810 2.7e-06 55.5 73 39.7
AUR62009480 Chenopodium quinoa HOM05D000990 ORTHO05D000810 2.7e-06 55.5 83 37.3
Ciclev10012668m.g Citrus clementina HOM05D000990 ORTHO05D000810 2.7e-06 55.5 60 46.7
Dinv33863 Davidia involucrata HOM05D000990 ORTHO05D000810 2.7e-06 55.5 67 43.3
HanXRQChr06g0175461 Helianthus annuus HOM05D000990 ORTHO05D000810 2.7e-06 55.5 90 42.2
Nitab4.5_0001339g0080 Nicotiana tabacum HOM05D000990 ORTHO05D000810 2.7e-06 55.5 60 48.3
TWI32G0202 Tripterygium wilfordii HOM05D000990 ORTHO05D000810 2.7e-06 55.5 67 46.3
vmacro18127 Vaccinium macrocarpon HOM05D000990 ORTHO05D000810 2.7e-06 55.5 74 41.9
ATR0582G151 Amborella trichopoda HOM05D000990 ORTHO05D000810 3.5e-06 55.1 52 51.9
AUR62023159 Chenopodium quinoa HOM05D000990 ORTHO05D000810 3.5e-06 55.1 81 37.0
Lj4A123G18 Lonicera japonica HOM05D000990 ORTHO05D000810 3.5e-06 55.1 84 35.7
Haze_14381 Corylus avellana HOM05D000990 ORTHO05D000810 4.5e-06 54.7 73 43.8
Glyma.08G251300 Glycine max HOM05D000990 ORTHO05D000810 4.5e-06 54.7 73 42.5
MD09G1074400 Malus domestica HOM05D000990 ORTHO05D000810 4.5e-06 54.7 63 46.0
MD17G1065800 Malus domestica HOM05D000990 ORTHO05D000810 4.5e-06 54.7 63 46.0
Medtr7g016840 Medicago truncatula HOM05D000990 ORTHO05D000810 4.5e-06 54.7 60 46.7
Phvul.008G026500 Phaseolus vulgaris HOM05D000990 ORTHO05D000810 5.9e-06 54.3 73 42.5
Phvul.008G027500 Phaseolus vulgaris HOM05D000990 ORTHO05D000810 5.9e-06 54.3 72 41.7
QL02p065865 Quercus lobata HOM05D000990 ORTHO05D000810 5.9e-06 54.3 73 43.8
Sed0020163 Sechium edule HOM05D000990 ORTHO05D000810 5.9e-06 54.3 50 50.0
CiPaw.03G082900 Carya illinoinensis HOM05D000990 ORTHO05D000810 7.8e-06 53.9 60 46.7
Ca_06904_v3 Cicer arietinum L. HOM05D000990 ORTHO05D000810 7.8e-06 53.9 60 46.7
Migut.O00381 Erythranthe guttata HOM05D000990 ORTHO05D000810 7.8e-06 53.9 68 44.1
Gohir.D07G186500 Gossypium hirsutum HOM05D000990 ORTHO05D000810 7.8e-06 53.9 63 47.6
Manes.02G059500 Manihot esculenta HOM05D000990 ORTHO05D000810 7.8e-06 53.9 60 48.3
Peaxi162Scf01197g00005 Petunia axillaris HOM05D000990 ORTHO05D000810 7.8e-06 53.9 69 42.0
TAR629G0419 Trochodendron aralioides HOM05D000990 ORTHO05D000810 7.8e-06 53.9 71 43.7


User provided reference genes

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