Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1304600 Malus domestica HOM05D000089 ORTHO05D013157 2.6e-46 188.3 94 100.0
MD02G1304400 Malus domestica HOM05D000089 ORTHO05D000104 3.1e-15 85.1 49 83.7
MD02G1304900 Malus domestica HOM05D000089 ORTHO05D000104 3.4e-14 81.6 49 79.6
MD02G1304200 Malus domestica HOM05D000089 ORTHO05D000104 1.3e-13 79.7 49 83.7
Prupe.2G021500 Prunus persica HOM05D000089 ORTHO05D000104 3.8e-13 78.2 49 75.5
MD07G1021600 Malus domestica HOM05D000089 ORTHO05D000104 7.2e-12 73.9 44 77.3
MD02G1303800 Malus domestica HOM05D000089 ORTHO05D000104 1.2e-11 73.2 47 76.6
MD07G1021200 Malus domestica HOM05D000089 ORTHO05D000104 1.6e-11 72.8 54 68.5
MD07G1021500 Malus domestica HOM05D000089 ORTHO05D000104 3.6e-11 71.6 54 64.8
MD02G1303400 Malus domestica HOM05D000089 ORTHO05D000104 6.1e-11 70.9 54 68.5
MD02G1303900 Malus domestica HOM05D000089 ORTHO05D000104 6.1e-11 70.9 47 74.5
MD02G1305300 Malus domestica HOM05D000089 ORTHO05D000104 6.1e-11 70.9 47 76.6
MD07G1020900 Malus domestica HOM05D000089 ORTHO05D000104 7.9e-11 70.5 54 63.0
MD02G1305100 Malus domestica HOM05D000089 ORTHO05D000104 1.4e-10 69.7 65 56.9
MD04G1006100 Malus domestica HOM05D000089 ORTHO05D000104 1.4e-10 69.7 47 72.3
Prupe.2G021100 Prunus persica HOM05D000089 ORTHO05D000104 1.4e-10 69.7 47 74.5
Prupe.2G020700 Prunus persica HOM05D000089 ORTHO05D000104 3.0e-10 68.6 47 72.3
MD07G1020300 Malus domestica HOM05D000089 ORTHO05D000104 8.8e-10 67.0 71 53.5
Prupe.2G021000 Prunus persica HOM05D000089 ORTHO05D000104 1.5e-09 66.2 47 70.2
MD02G1305400 Malus domestica HOM05D000089 ORTHO05D000104 2.0e-09 65.9 74 51.4
Prupe.2G021300 Prunus persica HOM05D000089 ORTHO05D000104 2.0e-09 65.9 46 69.6
RcHm_v2.0_Chr1g0317441 Rosa chinensis HOM05D000089 ORTHO05D000104 5.7e-09 64.3 46 71.7
FAN06G2057 Fragaria x ananassa HOM05D000089 ORTHO05D000104 9.7e-09 63.5 52 67.3
Manes.07G008930 Manihot esculenta HOM05D000089 ORTHO05D000104 9.7e-09 63.5 58 58.6
COL.COLO4_12344 Corchorus olitorius HOM05D000089 ORTHO05D013157 1.3e-08 63.2 41 70.7
FAN01G1073 Fragaria x ananassa HOM05D000089 ORTHO05D000104 1.3e-08 63.2 52 65.4
FAN03G0425 Fragaria x ananassa HOM05D000089 ORTHO05D000104 1.3e-08 63.2 52 65.4
RcHm_v2.0_Chr1g0317421 Rosa chinensis HOM05D000089 ORTHO05D000104 1.3e-08 63.2 46 67.4
Manes.07G009200 Manihot esculenta HOM05D000089 ORTHO05D000104 2.2e-08 62.4 49 65.3
FvH4_7g01520 Fragaria vesca HOM05D000089 ORTHO05D000104 2.8e-08 62.0 52 63.5
VMungo1080G0441 Vigna mungo HOM05D000089 ORTHO05D000104 2.8e-08 62.0 49 59.2
FvH4_7g01560 Fragaria vesca HOM05D000089 ORTHO05D000104 3.7e-08 61.6 39 71.8
FAN03G1530 Fragaria x ananassa HOM05D000089 ORTHO05D000104 3.7e-08 61.6 39 71.8
FAN06G3178 Fragaria x ananassa HOM05D000089 ORTHO05D000104 3.7e-08 61.6 39 71.8
RcHm_v2.0_Chr1g0317371 Rosa chinensis HOM05D000089 ORTHO05D000104 4.8e-08 61.2 46 67.4
Thecc.04G105100 Theobroma cacao HOM05D000089 ORTHO05D000104 4.8e-08 61.2 57 54.4
Manes.10G138318 Manihot esculenta HOM05D000089 ORTHO05D000104 6.3e-08 60.8 49 57.1
Phvul.005G034800 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 6.3e-08 60.8 49 61.2
Eucgr.G03341 Eucalyptus grandis HOM05D000089 ORTHO05D000104 8.2e-08 60.5 49 59.2
Thecc.01G407000 Theobroma cacao HOM05D000089 ORTHO05D000104 1.1e-07 60.1 38 73.7
Phvul.005G034600 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 1.4e-07 59.7 49 55.1
RcHm_v2.0_Chr1g0317591 Rosa chinensis HOM05D000089 ORTHO05D000104 1.4e-07 59.7 39 69.2
CANSAT56G0503 Cannabis sativa HOM05D000089 ORTHO05D000104 1.8e-07 59.3 38 73.7
FAN10G0491 Fragaria x ananassa HOM05D000089 ORTHO05D013157 1.8e-07 59.3 46 67.4
MBI17_g06721_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.8e-07 59.3 53 52.8
Eucgr.G03344 Eucalyptus grandis HOM05D000089 ORTHO05D000104 2.4e-07 58.9 49 53.1
FAN03G2763 Fragaria x ananassa HOM05D000089 ORTHO05D000104 2.4e-07 58.9 46 65.2
Manes.10G138900 Manihot esculenta HOM05D000089 ORTHO05D000104 2.4e-07 58.9 38 76.3
Rhsim08G0181700 Rhododendron simsii HOM05D000089 ORTHO05D000104 2.4e-07 58.9 86 39.5
Eucgr.G03353 Eucalyptus grandis HOM05D000089 ORTHO05D000104 3.1e-07 58.5 49 57.1
Eucgr.L02744 Eucalyptus grandis HOM05D000089 ORTHO05D000104 3.1e-07 58.5 49 57.1
Manes.07G009924 Manihot esculenta HOM05D000089 ORTHO05D000104 3.1e-07 58.5 58 55.2
Eucgr.G00289 Eucalyptus grandis HOM05D000089 ORTHO05D000104 4.1e-07 58.2 45 62.2
Eucgr.G03342 Eucalyptus grandis HOM05D000089 ORTHO05D000104 4.1e-07 58.2 49 57.1
CANSAT80G2390 Cannabis sativa HOM05D000089 ORTHO05D000104 5.3e-07 57.8 49 57.1
AUR62000140 Chenopodium quinoa HOM05D000089 ORTHO05D000104 5.3e-07 57.8 49 49.0
FvH4_7g01511 Fragaria vesca HOM05D000089 ORTHO05D000104 5.3e-07 57.8 46 65.2
FAN06G4752 Fragaria x ananassa HOM05D000089 ORTHO05D000104 5.3e-07 57.8 46 65.2
Manes.07G009261 Manihot esculenta HOM05D000089 ORTHO05D000104 5.3e-07 57.8 38 76.3
Phvul.005G034700 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 5.3e-07 57.8 49 53.1
RcHm_v2.0_Chr1g0317581 Rosa chinensis HOM05D000089 ORTHO05D000104 5.3e-07 57.8 42 66.7
Potri.009G057800 Populus trichocarpa HOM05D000089 ORTHO05D000104 6.9e-07 57.4 38 76.3
CANSAT80G2187 Cannabis sativa HOM05D000089 ORTHO05D000104 9.1e-07 57.0 40 72.5
Ciclev10015912m.g Citrus clementina HOM05D000089 ORTHO05D000104 9.1e-07 57.0 35 74.3
RcHm_v2.0_Chr1g0317501 Rosa chinensis HOM05D000089 ORTHO05D000104 9.1e-07 57.0 38 73.7
Duzib133G0468 Durio zibethinus HOM05D000089 ORTHO05D000104 1.2e-06 56.6 41 70.7
Eucgr.G03351 Eucalyptus grandis HOM05D000089 ORTHO05D000104 1.2e-06 56.6 49 55.1
Lj9C639G11 Lonicera japonica HOM05D000089 ORTHO05D000104 1.2e-06 56.6 39 69.2
Thecc.01G407100 Theobroma cacao HOM05D000089 ORTHO05D000104 1.2e-06 56.6 38 71.1
VMungo1080G1373 Vigna mungo HOM05D000089 ORTHO05D000104 1.2e-06 56.6 47 55.3
GSVIVG01012378001 Vitis vinifera HOM05D000089 ORTHO05D000104 1.2e-06 56.6 47 55.3
GSVIVG01012383001 Vitis vinifera HOM05D000089 ORTHO05D000104 1.2e-06 56.6 47 55.3
MSTRG.18436 Avicennia marina HOM05D000089 ORTHO05D000104 1.5e-06 56.2 57 50.9
AUR62019321 Chenopodium quinoa HOM05D000089 ORTHO05D000104 1.5e-06 56.2 49 49.0
COL.COLO4_04651 Corchorus olitorius HOM05D000089 ORTHO05D000104 1.5e-06 56.2 38 68.4
MBI17_g35478_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.5e-06 56.2 38 65.8
MD03G1172800 Malus domestica HOM05D000089 ORTHO05D000104 1.5e-06 56.2 38 68.4
MD11G1190800 Malus domestica HOM05D000089 ORTHO05D000104 1.5e-06 56.2 38 68.4
Potri.001G256400 Populus trichocarpa HOM05D000089 ORTHO05D000104 1.5e-06 56.2 39 64.1
Potri.009G052000 Populus trichocarpa HOM05D000089 ORTHO05D000104 1.5e-06 56.2 39 66.7
Potri.009G057500 Populus trichocarpa HOM05D000089 ORTHO05D000104 1.5e-06 56.2 49 57.1
TWI73G1189 Tripterygium wilfordii HOM05D000089 ORTHO05D000104 1.5e-06 56.2 37 67.6
CDE06G2462 Ceratophyllum demersum HOM05D000089 ORTHO05D000104 2.0e-06 55.8 57 50.9
Glyma.12G019900 Glycine max HOM05D000089 ORTHO05D000104 2.0e-06 55.8 46 58.7
Gohir.D07G127500 Gossypium hirsutum HOM05D000089 ORTHO05D000104 2.0e-06 55.8 37 64.9
Gorai.001G137800 Gossypium raimondii HOM05D000089 ORTHO05D000104 2.0e-06 55.8 37 64.9
Manes.07G008600 Manihot esculenta HOM05D000089 ORTHO05D000104 2.0e-06 55.8 48 58.3
PGR031G0576 Punica granatum HOM05D000089 ORTHO05D000104 2.0e-06 55.8 49 51.0
TAR465G0004 Trochodendron aralioides HOM05D000089 ORTHO05D000104 2.0e-06 55.8 37 64.9
Cfa010805 Carpinus fangiana HOM05D000089 ORTHO05D000104 2.6e-06 55.5 39 66.7
Duzib150G1336 Durio zibethinus HOM05D000089 ORTHO05D000104 2.6e-06 55.5 35 68.6
Eucgr.G03345 Eucalyptus grandis HOM05D000089 ORTHO05D000104 2.6e-06 55.5 49 55.1
Eucgr.L02743 Eucalyptus grandis HOM05D000089 ORTHO05D000104 2.6e-06 55.5 50 48.0
Gohir.D11G078000 Gossypium hirsutum HOM05D000089 ORTHO05D000104 2.6e-06 55.5 41 61.0
Gorai.007G083500 Gossypium raimondii HOM05D000089 ORTHO05D000104 2.6e-06 55.5 41 61.0
Lalb_Chr19g0139831 Lupinus albus HOM05D000089 ORTHO05D013157 2.6e-06 55.5 52 50.0
Phvul.005G034500 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 2.6e-06 55.5 36 69.4
Sed0016941 Sechium edule HOM05D000089 ORTHO05D000104 2.6e-06 55.5 39 64.1
TWI73G0150 Tripterygium wilfordii HOM05D000089 ORTHO05D000104 2.6e-06 55.5 37 64.9
arahy.Tifrunner.gnm1.ann1.9CW3JX Arachis hypogaea HOM05D000089 ORTHO05D000104 3.4e-06 55.1 46 52.2
arahy.Tifrunner.gnm1.ann1.YNW4Y6 Arachis hypogaea HOM05D000089 ORTHO05D000104 3.4e-06 55.1 46 52.2
Dinv43412 Davidia involucrata HOM05D000089 ORTHO05D000104 3.4e-06 55.1 49 55.1
Eucgr.K03067 Eucalyptus grandis HOM05D000089 ORTHO05D000104 3.4e-06 55.1 46 58.7
Sabra09G0042300 Salix brachista HOM05D000089 ORTHO05D000104 3.4e-06 55.1 38 71.1
Sabra09G0042400 Salix brachista HOM05D000089 ORTHO05D000104 3.4e-06 55.1 38 71.1
SGA_v2.0_scaffold66G22238 Striga asiatica HOM05D000089 ORTHO05D000104 3.4e-06 55.1 34 76.5
TAR623G0021 Trochodendron aralioides HOM05D000089 ORTHO05D000104 3.4e-06 55.1 37 62.2
Atru.chr3.2692 Acer truncatum HOM05D000089 ORTHO05D000104 4.5e-06 54.7 35 68.6
Migut.B01275 Erythranthe guttata HOM05D000089 ORTHO05D013157 4.5e-06 54.7 46 50.0
Eucgr.G03355 Eucalyptus grandis HOM05D000089 ORTHO05D000104 4.5e-06 54.7 50 52.0
Gohir.A11G073300 Gossypium hirsutum HOM05D000089 ORTHO05D000104 4.5e-06 54.7 51 58.8
Manes.07G009600 Manihot esculenta HOM05D000089 ORTHO05D000104 4.5e-06 54.7 49 55.1
Thecc.05G218300 Theobroma cacao HOM05D000089 ORTHO05D000104 4.5e-06 54.7 72 41.7
Atru.chr3.2687 Acer truncatum HOM05D000089 ORTHO05D000104 5.9e-06 54.3 35 68.6
AUR62019322 Chenopodium quinoa HOM05D000089 ORTHO05D000104 5.9e-06 54.3 49 46.9
Duzib177G1191 Durio zibethinus HOM05D000089 ORTHO05D000104 5.9e-06 54.3 50 50.0
Eucgr.B03696 Eucalyptus grandis HOM05D000089 ORTHO05D000104 5.9e-06 54.3 39 61.5
Manes.07G009140 Manihot esculenta HOM05D000089 ORTHO05D000104 5.9e-06 54.3 48 56.2
Manes.07G009913 Manihot esculenta HOM05D000089 ORTHO05D000104 5.9e-06 54.3 48 54.2
Prupe.4G253700 Prunus persica HOM05D000089 ORTHO05D000104 5.9e-06 54.3 38 68.4
Thecc.09G236400 Theobroma cacao HOM05D000089 ORTHO05D000104 5.9e-06 54.3 38 65.8
TAR628G0223 Trochodendron aralioides HOM05D000089 ORTHO05D000104 5.9e-06 54.3 38 63.2
BraA10t44097Z Brassica rapa HOM05D000089 ORTHO05D000104 7.7e-06 53.9 37 59.5
CiPaw.14G002400 Carya illinoinensis HOM05D000089 ORTHO05D000104 7.7e-06 53.9 47 55.3
ClCG02G023060 Citrullus lanatus HOM05D000089 ORTHO05D000104 7.7e-06 53.9 38 63.2
Lsat_1_v5_gn_6_25481 Lactuca sativa HOM05D000089 ORTHO05D000104 7.7e-06 53.9 50 48.0
Lj9C639G12 Lonicera japonica HOM05D000089 ORTHO05D000104 7.7e-06 53.9 41 58.5
Lalb_Chr01g0000641 Lupinus albus HOM05D000089 ORTHO05D000104 7.7e-06 53.9 49 51.0
Manes.10G138800 Manihot esculenta HOM05D000089 ORTHO05D000104 7.7e-06 53.9 38 68.4
Phvul.005G034633 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 7.7e-06 53.9 36 69.4
Phvul.005G034666 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 7.7e-06 53.9 36 69.4
Phvul.005G034900 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 7.7e-06 53.9 36 69.4
GSVIVG01012394001 Vitis vinifera HOM05D000089 ORTHO05D000104 7.7e-06 53.9 38 65.8


User provided reference genes

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