Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 9.0e-139 496.9 246 100.0
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 3.0e-110 402.1 217 91.7
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 6.8e-70 268.1 143 92.3
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 1.4e-67 260.4 219 63.9
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 6.6e-65 251.5 220 65.0
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 4.3e-64 248.8 219 60.3
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-63 247.3 219 61.2
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.4e-59 233.8 217 59.0
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.7e-57 226.9 215 56.3
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 2.3e-57 226.5 216 56.9
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 1.1e-56 224.2 217 56.7
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 1.9e-56 223.4 224 53.1
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 5.6e-56 221.9 215 54.9
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 2.8e-55 219.5 216 54.6
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.8e-55 219.5 214 55.1
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 1.8e-54 216.9 215 54.0
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 3.1e-54 216.1 230 52.6
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 6.8e-54 214.9 216 54.6
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 6.8e-54 214.9 184 60.9
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 6.8e-54 214.9 183 61.2
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 8.9e-54 214.5 216 53.7
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.2e-53 214.2 216 55.1
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 1.5e-53 213.8 215 54.0
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.5e-53 213.8 220 54.1
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.0e-53 213.4 212 54.2
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 2.0e-53 213.4 215 52.1
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 3.4e-53 212.6 217 53.9
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 4.4e-53 212.2 215 55.8
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 7.5e-53 211.5 215 52.6
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 7.5e-53 211.5 218 52.8
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.7e-52 210.3 216 50.9
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 3.7e-52 209.1 216 50.9
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 4.9e-52 208.8 215 52.1
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 1.1e-51 207.6 218 54.1
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.1e-51 207.6 219 54.3
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 1.1e-51 207.6 217 54.8
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 1.4e-51 207.2 218 54.1
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 2.4e-51 206.5 219 52.5
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 4.1e-51 205.7 218 53.7
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 5.4e-51 205.3 213 52.1
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 9.2e-51 204.5 216 50.5
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 2.0e-50 203.4 214 53.7
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 2.0e-50 203.4 215 53.5
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 6.0e-50 201.8 219 48.9
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 1.0e-49 201.1 168 61.9
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 2.3e-49 199.9 218 51.4
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 6.6e-49 198.4 216 51.4
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 8.6e-49 198.0 216 50.9
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 1.1e-48 197.6 227 49.8
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 1.5e-48 197.2 215 48.8
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 5.6e-48 195.3 218 50.5
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 1.2e-47 194.1 216 49.5
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 2.8e-47 193.0 223 48.9
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 3.6e-47 192.6 217 48.4
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 1.1e-46 191.0 216 49.5
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 3.1e-46 189.5 223 47.5
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 6.8e-46 188.3 231 46.3
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 8.9e-46 188.0 214 49.1
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 3.4e-45 186.0 216 49.1
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 5.8e-45 185.3 168 57.1
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 8.3e-44 181.4 232 46.1
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 1.1e-43 181.0 172 54.7
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 5.4e-43 178.7 217 49.3
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 5.4e-43 178.7 171 55.0
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 2.1e-42 176.8 217 44.7
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 6.0e-42 175.3 218 45.9
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 7.8e-42 174.9 206 46.1
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.0e-41 174.5 207 45.9
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.7e-41 173.7 216 44.4
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 2.3e-41 173.3 217 47.0
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 6.6e-41 171.8 196 48.5
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.5e-40 170.6 216 44.4
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.9e-40 170.2 207 44.9
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 3.3e-40 169.5 207 44.9
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 4.3e-40 169.1 206 45.1
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 2.1e-39 166.8 206 45.1
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 4.7e-39 165.6 215 44.7
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.8e-38 163.7 213 42.7
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 3.1e-38 162.9 214 47.2
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 6.8e-38 161.8 214 42.1
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.2e-37 161.0 181 49.2
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 2.6e-37 159.8 220 44.5
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 2.6e-37 159.8 139 58.3
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 4.4e-37 159.1 139 58.3
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 5.8e-37 158.7 171 49.7
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 2.9e-36 156.4 172 48.3
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 8.4e-36 154.8 300 35.7
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 3.2e-35 152.9 164 50.6
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 9.2e-35 151.4 217 44.2
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 1.2e-34 151.0 218 39.9
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.2e-34 151.0 154 54.5
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 1.2e-34 151.0 121 63.6
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.6e-34 150.6 174 47.1
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 1.6e-34 150.6 187 45.5
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 2.1e-34 150.2 218 41.7
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 3.5e-34 149.4 222 40.1
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 7.8e-34 148.3 219 40.6
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 1.3e-33 147.5 139 57.6
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.7e-33 147.1 170 45.9
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.0e-33 146.4 216 39.8
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 3.9e-33 146.0 218 39.9
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 1.1e-32 144.4 214 39.3
Lj2g0001718 Lotus japonicus HOM05D004603 ORTHO05D005244 1.5e-32 144.1 136 54.4
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 2.5e-32 143.3 169 47.3
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.5e-32 143.3 170 47.6
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 5.6e-32 142.1 215 39.5
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 7.3e-32 141.7 186 41.4
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.1e-31 140.2 170 47.1
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 3.1e-30 136.3 165 44.2
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 3.1e-30 136.3 169 44.4
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 4.0e-30 136.0 210 38.6
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 6.9e-30 135.2 189 42.9
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 1.2e-29 134.4 192 40.1
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 2.0e-29 133.7 171 45.6
Actinidia21527 Actinidia chinensis HOM05D004603 ORTHO05D005244 2.6e-29 133.3 179 43.6
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 5.8e-29 132.1 172 43.0
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 5.8e-29 132.1 148 45.3
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 7.6e-29 131.7 211 40.3
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 7.6e-29 131.7 172 42.4
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 2.2e-28 130.2 174 43.1
BcaC08g43772 Brassica carinata HOM05D004603 ORTHO05D005244 2.9e-28 129.8 218 36.7
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 3.8e-28 129.4 128 54.7
Gohir.A05G333100 Gossypium hirsutum HOM05D004603 ORTHO05D005244 4.9e-28 129.0 120 53.3
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 6.4e-28 128.6 137 51.8
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 1.1e-27 127.9 177 38.4
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 1.9e-27 127.1 161 41.0
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 2.4e-27 126.7 167 44.9
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 2.4e-27 126.7 172 44.2
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 5.4e-27 125.6 147 50.3
FAN08G2679 Fragaria x ananassa HOM05D004603 ORTHO05D005244 7.1e-27 125.2 235 39.6
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 1.6e-26 124.0 180 38.3
C06p11480 Brassica napus HOM05D004603 ORTHO05D005244 4.6e-26 122.5 165 38.8
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 4.6e-26 122.5 114 53.5
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 6.0e-26 122.1 152 43.4
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 1.3e-25 120.9 162 39.5
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.9e-25 119.4 206 37.9
CARHR033890 Cardamine hirsuta HOM05D004603 ORTHO05D005244 6.6e-25 118.6 218 36.2
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.1e-24 117.9 88 61.4
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 2.5e-24 116.7 197 38.6
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 7.3e-24 115.2 120 50.0
ATR0721G140 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.6e-23 114.0 101 54.5
Oeu062071.1 Olea europaea HOM05D004603 ORTHO05D005244 1.1e-22 111.3 137 44.5
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 9.0e-22 108.2 135 41.5
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 9.3e-19 98.2 73 57.5
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 1.6e-18 97.4 79 62.0
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 7.4e-16 88.6 102 48.0
FvH4_3g19550 Fragaria vesca HOM05D004603 ORTHO05D005244 7.4e-16 88.6 87 51.7
Zm00001eb140990 Zea mays HOM05D004603 ORTHO05D005244 1.3e-15 87.8 190 32.1
FAN11G0237 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.6e-15 87.4 87 51.7
AagrBONN_evm.TU.Sc2ySwM_117.3931 Anthoceros agrestis HOM05D004603 ORTHO05D005244 8.1e-15 85.1 129 38.0
Zm00001eb363050 Zea mays HOM05D004603 ORTHO05D005244 1.4e-14 84.3 125 38.4
A01p20230 Brassica napus HOM05D017989 ORTHO05D021787 3.1e-14 83.2 106 42.5
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 4.0e-14 82.8 104 41.3
MBI13_g05162_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.7e-12 77.4 172 31.4
QL02p069618 Quercus lobata HOM05D004603 ORTHO05D005244 6.4e-12 75.5 96 46.9
Sabra03G0149000 Salix brachista HOM05D004603 ORTHO05D005244 6.4e-12 75.5 219 32.0
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 2.7e-10 70.1 117 38.5
SMO137G0333 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.0e-09 68.2 132 32.6
SMO170G0061 Selaginella moellendorffii HOM05D004603 ORTHO05D005244 1.3e-09 67.8 112 35.7
Cre09.g388245 Chlamydomonas reinhardtii HOM05D004603 ORTHO05D005244 2.3e-09 67.0 91 40.7
BolC6t36282H Brassica oleracea HOM05D000499 ORTHO05D002825 1.9e-08 63.9 96 37.5
BraA09t38742Z Brassica rapa HOM05D000499 ORTHO05D002825 1.9e-08 63.9 98 35.7
AUR62017456 Chenopodium quinoa HOM05D004603 ORTHO05D005244 3.3e-08 63.2 109 36.7
AagrBONN_evm.TU.Sc2ySwM_368.759 Anthoceros agrestis HOM05D004603 ORTHO05D005244 5.6e-08 62.4 91 34.1
AT1G34550 Arabidopsis thaliana HOM05D000499 ORTHO05D002825 4.0e-06 56.2 98 35.7
Lj1C1244T2 Lonicera japonica HOM05D004603 ORTHO05D005244 6.9e-06 55.5 86 39.5
ECA248G0821 Erigeron canadensis HOM05D004603 ORTHO05D005244 9.0e-06 55.1 99 34.3


User provided reference genes

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