Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 1.2e-83 313.2 158 100.0
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 1.6e-64 249.6 133 92.5
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 1.4e-63 246.5 133 91.0
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.4e-60 235.7 133 85.7
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.4e-60 235.7 133 85.7
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 9.1e-60 233.8 133 84.2
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 1.6e-59 233.0 133 85.0
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 7.7e-59 230.7 133 84.2
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 7.7e-59 230.7 133 84.2
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 4.7e-56 221.5 133 81.2
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 8.0e-56 220.7 133 81.2
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 1.0e-55 220.3 131 80.9
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 3.0e-55 218.8 137 77.4
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 3.0e-55 218.8 133 81.2
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 3.0e-55 218.8 133 78.2
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 4.0e-55 218.4 131 80.9
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 4.0e-55 218.4 133 81.2
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 8.8e-55 217.2 133 78.2
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.5e-54 216.5 133 79.7
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.6e-54 215.7 133 78.9
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 3.3e-54 215.3 133 78.2
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 4.4e-54 214.9 133 78.2
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 5.7e-54 214.5 131 80.2
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 5.7e-54 214.5 133 78.2
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 9.7e-54 213.8 133 78.2
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 1.7e-53 213.0 133 78.9
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 2.2e-53 212.6 136 75.7
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 2.8e-53 212.2 133 78.9
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 2.8e-53 212.2 133 76.7
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 3.7e-53 211.8 133 76.7
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 4.8e-53 211.5 131 77.9
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 4.8e-53 211.5 131 77.9
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 1.1e-52 210.3 133 77.4
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 1.1e-52 210.3 133 77.4
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 1.4e-52 209.9 133 75.9
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 1.8e-52 209.5 132 75.8
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 2.4e-52 209.1 149 69.8
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 3.1e-52 208.8 133 74.4
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 7.0e-52 207.6 133 74.4
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 1.2e-51 206.8 144 70.8
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 1.2e-51 206.8 133 74.4
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 1.6e-51 206.5 133 74.4
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 2.7e-51 205.7 133 76.7
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 4.5e-51 204.9 141 72.3
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 5.9e-51 204.5 133 73.7
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 5.9e-51 204.5 131 74.8
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 7.7e-51 204.1 131 74.8
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 7.7e-51 204.1 132 72.7
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.3e-50 203.4 133 75.2
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 2.2e-50 202.6 128 75.8
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 3.8e-50 201.8 126 77.8
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 6.5e-50 201.1 131 72.5
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 6.5e-50 201.1 131 72.5
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 5.5e-49 198.0 132 72.7
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 7.2e-49 197.6 133 72.9
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 4.7e-48 194.9 125 73.6
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 8.0e-48 194.1 133 70.7
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 8.0e-48 194.1 133 70.7
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.0e-47 193.7 129 72.9
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 1.8e-47 193.0 131 72.5
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 3.0e-47 192.2 131 72.5
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 3.0e-47 192.2 131 69.5
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 3.0e-47 192.2 131 70.2
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 4.0e-47 191.8 131 71.8
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 4.0e-47 191.8 131 71.8
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 4.0e-47 191.8 131 71.8
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 4.0e-47 191.8 131 71.8
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 4.0e-47 191.8 133 69.2
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 5.2e-47 191.4 131 70.2
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 5.2e-47 191.4 131 70.2
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 6.8e-47 191.0 126 72.2
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 1.5e-46 189.9 131 70.2
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.5e-46 189.9 128 72.7
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 1.5e-46 189.9 131 70.2
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.5e-46 189.9 128 69.5
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 2.6e-46 189.1 131 69.5
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 2.6e-46 189.1 131 69.5
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 2.6e-46 189.1 131 69.5
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 3.4e-46 188.7 126 69.8
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 4.4e-46 188.3 125 71.2
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 7.5e-46 187.6 133 69.9
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 7.5e-46 187.6 132 67.4
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 9.8e-46 187.2 142 65.5
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.3e-45 186.8 125 69.6
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 6.3e-45 184.5 140 67.1
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 1.1e-44 183.7 141 66.7
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 1.1e-44 183.7 128 70.3
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 1.1e-44 183.7 133 68.4
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 1.4e-44 183.3 128 70.3
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 1.8e-44 183.0 140 65.7
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.8e-44 183.0 126 72.2
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 2.4e-44 182.6 144 65.3
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 2.4e-44 182.6 126 70.6
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 4.1e-44 181.8 126 69.8
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 4.1e-44 181.8 134 67.2
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 5.4e-44 181.4 140 65.0
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 5.4e-44 181.4 128 67.2
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 5.4e-44 181.4 128 67.2
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 1.2e-43 180.3 138 65.2
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 1.2e-43 180.3 138 65.2
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 1.6e-43 179.9 132 65.2
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 1.6e-43 179.9 126 72.2
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 4.5e-43 178.3 128 65.6
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 5.9e-43 177.9 172 55.2
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 7.7e-43 177.6 158 57.6
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 7.7e-43 177.6 127 65.4
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 7.7e-43 177.6 127 65.4
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 1.0e-42 177.2 126 68.3
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 1.3e-42 176.8 127 65.4
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 8.8e-39 164.1 136 61.8
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 7.5e-38 161.0 131 61.8
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 2.8e-37 159.1 104 76.0
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 5.9e-35 151.4 132 55.3
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 8.6e-34 147.5 131 58.0
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.6e-32 143.3 131 59.5
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 2.1e-32 142.9 95 70.5
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 8.9e-31 137.5 128 53.9
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.2e-30 137.1 93 69.9
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 2.6e-30 136.0 128 53.1
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 1.7e-29 133.3 133 51.9
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 2.8e-24 115.9 71 76.1
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 3.6e-24 115.5 75 74.7
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 3.6e-24 115.5 62 87.1
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.0e-23 114.0 69 79.7
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.8e-23 113.2 71 76.1
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 3.1e-23 112.5 75 73.3
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 4.0e-23 112.1 76 69.7
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 4.0e-23 112.1 72 72.2
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 8.9e-23 110.9 87 64.4
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 3.4e-22 109.0 62 83.9
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 3.4e-22 109.0 62 83.9
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 1.7e-21 106.7 62 80.6
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.7e-21 106.7 72 69.4
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 2.2e-21 106.3 72 72.2
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 1.9e-20 103.2 118 41.5
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 2.4e-20 102.8 70 70.0
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 2.4e-20 102.8 100 55.0
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 7.0e-20 101.3 65 75.4
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 1.4e-15 87.0 64 65.6
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 3.4e-14 82.4 56 69.6
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 1.9e-12 76.6 123 34.1
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 4.1e-12 75.5 77 50.6
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 5.4e-12 75.1 53 64.2
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 7.1e-12 74.7 69 47.8
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 1.5e-09 67.0 51 60.8
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 1.6e-08 63.5 129 31.0
PRCOL_00003180 Prasinoderma coloniale HOM05D000737 ORTHO05D000581 2.3e-07 59.7 104 31.7
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 5.2e-07 58.5 58 37.9
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 6.8e-07 58.2 55 50.9


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