Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 2.6e-61 238.4 111 100.0
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 1.0e-57 226.5 111 94.6
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 1.2e-55 219.5 111 91.9
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 2.2e-52 208.8 111 86.5
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 2.0e-45 185.7 111 78.4
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 3.1e-38 161.8 94 74.5
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 4.0e-38 161.4 108 67.6
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 6.9e-38 160.6 111 68.5
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.6e-37 158.7 116 62.1
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.3e-36 156.4 95 73.7
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.9e-36 154.5 97 66.0
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 1.4e-35 152.9 96 71.9
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 4.2e-35 151.4 104 65.4
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.2e-35 151.4 92 70.7
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 4.2e-35 151.4 92 70.7
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 5.4e-35 151.0 108 63.0
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.2e-34 149.8 95 68.4
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 2.1e-34 149.1 115 60.0
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 3.5e-34 148.3 110 62.7
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 4.6e-34 147.9 107 57.9
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 4.6e-34 147.9 107 57.9
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 4.6e-34 147.9 95 68.4
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.3e-33 146.4 110 62.7
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.3e-33 146.4 92 69.6
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.3e-33 146.4 97 67.0
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 2.3e-33 145.6 96 67.7
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 3.9e-33 144.8 95 63.2
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 3.9e-33 144.8 94 68.1
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 3.9e-33 144.8 102 62.7
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 8.7e-33 143.7 125 55.2
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 8.7e-33 143.7 108 61.1
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 4.3e-32 141.4 95 65.3
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 5.6e-32 141.0 94 61.7
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 5.6e-32 141.0 106 61.3
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 5.6e-32 141.0 98 61.2
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 7.4e-32 140.6 96 61.5
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 9.6e-32 140.2 95 65.3
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 9.6e-32 140.2 100 61.0
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.3e-31 139.8 95 63.2
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.3e-31 139.8 108 57.4
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.3e-31 139.8 94 61.7
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 1.6e-31 139.4 112 58.0
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 3.7e-31 138.3 109 57.8
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 4.8e-31 137.9 107 57.0
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 6.2e-31 137.5 102 56.9
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 6.2e-31 137.5 103 60.2
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.8e-30 136.0 109 60.6
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 1.8e-30 136.0 89 66.3
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 3.1e-30 135.2 101 57.4
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 3.1e-30 135.2 107 64.5
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 4.0e-30 134.8 95 60.0
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 5.3e-30 134.4 96 61.5
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 6.9e-30 134.0 95 61.1
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 6.9e-30 134.0 94 59.6
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 6.9e-30 134.0 98 61.2
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.2e-29 133.3 94 63.8
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.2e-29 133.3 87 66.7
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.5e-29 132.9 106 58.5
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.5e-29 132.9 100 61.0
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 2.0e-29 132.5 106 56.6
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 4.5e-29 131.3 91 61.5
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 7.6e-29 130.6 94 58.5
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 9.9e-29 130.2 82 68.3
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.3e-28 129.8 95 60.0
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.3e-28 129.8 85 67.1
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.7e-28 129.4 84 66.7
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 2.2e-28 129.0 82 67.1
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 2.9e-28 128.6 109 57.8
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 2.9e-28 128.6 85 68.2
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 6.4e-28 127.5 109 55.0
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 1.4e-27 126.3 106 53.8
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.9e-27 125.9 106 57.5
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 9.3e-27 123.6 88 62.5
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 9.3e-27 123.6 98 56.1
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.2e-26 123.2 108 51.9
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 1.2e-26 123.2 106 56.6
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 1.2e-26 123.2 106 56.6
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.6e-26 122.9 106 50.9
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-26 122.9 92 56.5
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 2.7e-26 122.1 91 59.3
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 3.5e-26 121.7 90 57.8
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.0e-25 120.2 89 57.3
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.0e-25 118.6 79 65.8
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 5.1e-25 117.9 107 45.8
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 5.1e-25 117.9 107 46.7
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 6.7e-25 117.5 86 58.1
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 6.7e-25 117.5 94 54.3
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 8.7e-25 117.1 107 46.7
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.5e-24 116.3 91 57.1
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.5e-24 116.3 88 55.7
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.9e-24 115.9 108 45.4
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 2.5e-24 115.5 107 50.5
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 3.3e-24 115.2 98 52.0
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 4.3e-24 114.8 107 45.8
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 5.6e-24 114.4 107 44.9
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 7.4e-24 114.0 94 50.0
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 9.6e-24 113.6 88 55.7
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.6e-24 113.6 89 53.9
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 9.6e-24 113.6 99 50.5
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.3e-23 113.2 107 44.9
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 1.6e-23 112.8 107 43.9
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 2.1e-23 112.5 113 46.9
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 8.2e-23 110.5 94 52.1
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 1.4e-22 109.8 84 54.8
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.8e-22 109.4 94 48.9
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 1.8e-22 109.4 94 50.0
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 3.1e-22 108.6 93 48.4
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 4.0e-22 108.2 74 63.5
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 4.0e-22 108.2 96 52.1
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 4.0e-22 108.2 106 48.1
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 9.0e-22 107.1 96 52.1
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.8e-21 104.4 76 61.8
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 7.6e-21 104.0 90 48.9
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 2.2e-20 102.4 94 45.7
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 5.5e-19 97.8 93 47.3
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 9.3e-19 97.1 84 46.4
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 2.3e-17 92.4 71 54.9
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 9.7e-16 87.0 85 47.1
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 1.1e-14 83.6 84 38.1
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.8e-14 82.8 83 45.8
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.8e-14 82.8 95 41.1
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 5.3e-14 81.3 55 67.3
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 2.0e-13 79.3 109 34.9
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 3.4e-13 78.6 42 83.3
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 1.3e-07 60.1 33 78.8


User provided reference genes

Program Settings