Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 5.4e-89 330.9 155 100.0
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.4e-41 173.3 82 98.8
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 5.4e-41 171.4 82 96.3
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 7.1e-41 171.0 82 97.6
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 7.1e-41 171.0 82 97.6
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 7.1e-41 171.0 82 96.3
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 9.3e-41 170.6 81 97.5
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 9.3e-41 170.6 81 97.5
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 9.3e-41 170.6 81 97.5
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.2e-40 170.2 82 96.3
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.6e-40 169.9 87 92.0
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.6e-40 169.9 82 96.3
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 1.6e-40 169.9 82 96.3
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.6e-40 169.9 80 97.5
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 1.6e-40 169.9 82 96.3
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 2.1e-40 169.5 80 97.5
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.1e-40 169.5 80 97.5
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.1e-40 169.5 80 97.5
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.1e-40 169.5 80 97.5
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 2.1e-40 169.5 82 95.1
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.1e-40 169.5 82 95.1
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 2.1e-40 169.5 82 95.1
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 2.1e-40 169.5 80 97.5
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 2.1e-40 169.5 79 98.7
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 2.7e-40 169.1 81 96.3
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 3.5e-40 168.7 82 95.1
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 3.5e-40 168.7 82 95.1
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.5e-40 168.7 82 95.1
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 3.5e-40 168.7 82 95.1
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 3.5e-40 168.7 80 96.2
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 3.5e-40 168.7 82 96.3
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 4.6e-40 168.3 82 95.1
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 4.6e-40 168.3 82 95.1
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 7.8e-40 167.5 82 93.9
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 7.8e-40 167.5 82 93.9
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 7.8e-40 167.5 82 93.9
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 1.0e-39 167.2 82 93.9
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.0e-39 167.2 82 93.9
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.0e-39 167.2 82 95.1
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.0e-39 167.2 82 93.9
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.3e-39 166.8 82 92.7
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.7e-39 166.4 84 91.7
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.7e-39 166.4 84 91.7
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 2.3e-39 166.0 79 96.2
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.3e-39 166.0 80 95.0
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.3e-39 166.0 82 93.9
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 2.3e-39 166.0 80 95.0
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 3.0e-39 165.6 81 93.8
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 3.0e-39 165.6 82 92.7
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 3.9e-39 165.2 80 93.8
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 3.9e-39 165.2 82 92.7
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 6.6e-39 164.5 81 91.4
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 8.7e-39 164.1 79 94.9
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 8.7e-39 164.1 82 91.5
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 8.7e-39 164.1 82 91.5
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 8.7e-39 164.1 82 91.5
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 8.7e-39 164.1 82 91.5
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 8.7e-39 164.1 82 91.5
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 8.7e-39 164.1 82 91.5
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.1e-38 163.7 80 93.8
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.1e-38 163.7 82 91.5
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.1e-38 163.7 82 91.5
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.5e-38 163.3 82 90.2
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 1.5e-38 163.3 82 91.5
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.5e-38 163.3 82 91.5
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.5e-38 163.3 79 93.7
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.5e-38 163.3 81 92.6
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.9e-38 162.9 82 90.2
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.9e-38 162.9 82 90.2
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.9e-38 162.9 80 93.8
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.9e-38 162.9 78 93.6
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 1.9e-38 162.9 82 91.5
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.9e-38 162.9 79 94.9
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.5e-38 162.5 80 92.5
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.5e-38 162.5 82 90.2
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 2.5e-38 162.5 81 92.6
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.5e-38 162.5 80 92.5
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 2.5e-38 162.5 82 91.5
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 2.5e-38 162.5 82 91.5
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 3.3e-38 162.2 82 90.2
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 3.3e-38 162.2 79 93.7
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 3.3e-38 162.2 79 93.7
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 4.3e-38 161.8 82 89.0
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 4.3e-38 161.8 82 89.0
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 4.3e-38 161.8 79 92.4
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 4.3e-38 161.8 79 92.4
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 5.6e-38 161.4 79 89.9
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 7.3e-38 161.0 79 92.4
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 7.3e-38 161.0 82 89.0
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 7.3e-38 161.0 84 85.7
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 7.3e-38 161.0 91 83.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 7.3e-38 161.0 82 89.0
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 9.6e-38 160.6 82 86.6
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.3e-37 160.2 82 85.4
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 1.3e-37 160.2 82 89.0
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.6e-37 159.8 90 83.3
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 2.1e-37 159.5 79 92.4
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 2.8e-37 159.1 80 85.0
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 3.6e-37 158.7 80 88.8
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 3.6e-37 158.7 80 87.5
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 4.8e-37 158.3 80 88.8
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 4.8e-37 158.3 82 86.6
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 6.2e-37 157.9 78 88.5
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 8.1e-37 157.5 82 86.6
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 8.1e-37 157.5 82 86.6
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 1.1e-36 157.1 78 91.0
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 1.4e-36 156.8 82 85.4
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.4e-36 156.8 82 84.1
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.4e-36 156.8 79 86.1
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 2.4e-36 156.0 82 81.7
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 4.0e-36 155.2 79 88.6
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.5e-35 153.3 79 86.1
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.5e-35 153.3 79 86.1
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 1.5e-35 153.3 79 86.1
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 2.6e-35 152.5 79 86.1
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 2.6e-35 152.5 79 84.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 2.6e-35 152.5 79 86.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 3.4e-35 152.1 79 86.1
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 7.6e-35 151.0 79 86.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 9.9e-35 150.6 79 83.5
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.3e-34 150.2 74 93.2
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 6.4e-34 147.9 73 91.8
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 1.9e-33 146.4 71 97.2
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 2.4e-33 146.0 80 82.5
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.4e-33 144.8 81 77.8
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.8e-31 139.8 71 88.7
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 7.6e-27 124.4 76 73.7
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 2.9e-26 122.5 68 80.9
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.9e-26 121.7 72 73.6
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 1.4e-25 120.2 68 79.4
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 1.4e-25 120.2 68 79.4
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.3e-22 108.6 77 59.7
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.2e-19 100.5 49 87.8
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.0e-19 99.8 51 86.3
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 4.5e-19 98.6 103 49.5
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 5.0e-18 95.1 50 82.0
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 8.4e-18 94.4 68 57.4
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 4.8e-13 78.6 40 82.5
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 5.3e-12 75.1 38 86.8
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 5.3e-12 75.1 38 86.8
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 5.3e-12 75.1 38 86.8
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 5.3e-12 75.1 38 86.8
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 6.9e-12 74.7 37 89.2


User provided reference genes

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