Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.0e-31 139.4 71 100.0
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 3.4e-30 134.4 71 97.2
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 3.0e-26 121.3 67 89.6
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 3.0e-26 121.3 67 89.6
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 2.1e-24 115.2 67 86.6
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 5.2e-23 110.5 64 82.8
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.2e-23 110.5 64 82.8
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.2e-23 110.5 64 82.8
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 5.2e-23 110.5 64 82.8
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.5e-22 109.0 64 84.4
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.0e-22 108.6 67 79.1
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.0e-22 108.6 67 79.1
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 4.4e-22 107.5 68 75.0
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.3e-21 105.9 67 73.1
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.3e-21 105.9 67 76.1
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 1.7e-21 105.5 64 78.1
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 2.2e-21 105.1 67 74.6
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 2.2e-21 105.1 67 74.6
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 2.2e-21 105.1 67 74.6
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 2.9e-21 104.8 67 76.1
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 3.7e-21 104.4 67 73.1
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.9e-21 104.0 67 73.1
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 6.4e-21 103.6 66 75.8
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.3e-21 103.2 67 73.1
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 8.3e-21 103.2 67 73.1
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.2e-20 101.3 64 75.0
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 4.1e-20 100.9 64 73.4
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 4.1e-20 100.9 67 73.1
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 5.4e-20 100.5 67 71.6
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 7.0e-20 100.1 62 77.4
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 7.0e-20 100.1 64 75.0
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 7.0e-20 100.1 67 73.1
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 9.2e-20 99.8 64 71.9
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 9.2e-20 99.8 66 71.2
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 9.2e-20 99.8 67 73.1
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.2e-19 99.4 67 71.6
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.2e-19 99.4 64 73.4
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-19 99.0 67 70.1
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-19 99.0 66 68.2
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.6e-19 99.0 66 68.2
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 1.6e-19 99.0 64 71.9
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 2.1e-19 98.6 63 73.0
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.7e-19 98.2 64 71.9
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 3.5e-19 97.8 67 70.1
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 3.5e-19 97.8 67 70.1
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 4.6e-19 97.4 67 67.2
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 4.6e-19 97.4 63 74.6
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 4.6e-19 97.4 65 75.4
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 6.0e-19 97.1 66 68.2
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 6.0e-19 97.1 67 68.7
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 6.0e-19 97.1 67 68.7
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 7.8e-19 96.7 67 68.7
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 7.8e-19 96.7 68 69.1
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.8e-19 96.7 66 66.7
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 1.3e-18 95.9 66 66.7
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.3e-18 95.9 67 68.7
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.3e-18 95.9 67 68.7
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.7e-18 95.5 66 65.2
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.7e-18 95.5 66 65.2
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.7e-18 95.5 68 72.1
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.7e-18 95.5 63 73.0
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.7e-18 95.5 67 67.2
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.7e-18 95.5 66 65.2
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 2.3e-18 95.1 66 66.7
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.3e-18 95.1 67 68.7
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.0e-18 94.7 66 65.2
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 3.0e-18 94.7 66 65.2
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 3.0e-18 94.7 66 65.2
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.0e-18 94.7 66 65.2
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 3.0e-18 94.7 67 68.7
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 5.1e-18 94.0 66 65.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 5.1e-18 94.0 66 65.2
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 5.1e-18 94.0 66 65.2
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 5.1e-18 94.0 66 63.6
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 5.1e-18 94.0 64 68.8
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 6.6e-18 93.6 67 67.2
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.1e-17 92.8 63 73.0
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.1e-17 92.8 67 65.7
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.5e-17 92.4 68 67.6
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.9e-17 92.0 63 73.0
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 1.9e-17 92.0 63 73.0
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.9e-17 92.0 66 62.1
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.9e-17 92.0 66 66.7
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 2.5e-17 91.7 66 68.2
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.3e-17 91.3 68 69.1
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 3.3e-17 91.3 66 63.6
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 4.3e-17 90.9 64 64.1
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 4.3e-17 90.9 66 60.6
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 5.6e-17 90.5 63 68.3
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 7.3e-17 90.1 62 64.5
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.2e-16 89.4 67 64.2
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 2.1e-16 88.6 66 63.6
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.8e-16 88.2 67 61.2
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 4.7e-16 87.4 63 65.1
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.1e-16 86.7 67 59.7
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.1e-15 86.3 62 66.1
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.1e-15 86.3 66 65.2
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.1e-15 86.3 63 65.1
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.4e-15 85.9 61 67.2
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.3e-15 85.1 59 69.5
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 5.2e-15 84.0 48 83.3
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.8e-15 83.6 58 67.2
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 6.8e-15 83.6 60 66.7
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 8.9e-15 83.2 64 57.8
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.2e-14 82.8 58 67.2
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.2e-14 82.8 64 57.8
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.2e-14 82.8 67 65.7
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 2.6e-14 81.6 63 60.3
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 2.6e-14 81.6 48 79.2
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.4e-14 80.9 61 63.9
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 4.4e-14 80.9 67 59.7
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 5.8e-14 80.5 63 58.7
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 5.8e-14 80.5 66 65.2
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 7.5e-14 80.1 49 75.5
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 9.9e-14 79.7 48 77.1
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 9.9e-14 79.7 62 66.1
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 6.4e-13 77.0 57 71.9
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.1e-12 76.3 53 71.7
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.9e-12 75.5 59 64.4
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 4.1e-12 74.3 66 63.6
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 5.4e-12 73.9 68 52.9
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 3.5e-11 71.2 68 55.9
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.9e-10 67.8 50 62.0
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.9e-09 65.5 61 54.1
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.5e-09 65.1 63 55.6
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 2.5e-09 65.1 63 50.8
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 7.3e-09 63.5 63 54.0
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 9.5e-09 63.2 65 55.4


User provided reference genes

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